Experiment: m.b. Cholin acetate 76.57 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3161 and HP15_3162 are separated by 47 nucleotides HP15_3162 and HP15_3163 overlap by 2 nucleotides HP15_3163 and HP15_3164 are separated by 299 nucleotides
HP15_3161: HP15_3161 - extracellular solute-binding protein, family 3, at 3,315,210 to 3,316,220
_3161
HP15_3162: HP15_3162 - cytochrome c550, at 3,316,268 to 3,316,654
_3162
HP15_3163: HP15_3163 - hypothetical protein, at 3,316,653 to 3,316,763
_3163
HP15_3164: HP15_3164 - quinoprotein alcohol dehydrogenase, at 3,317,063 to 3,318,917
_3164
Position (kb)
3316
3317 Strain fitness (log2 ratio)
-1
0
1 at 3315.754 kb on - strand, within HP15_3161 at 3315.815 kb on - strand, within HP15_3161 at 3315.821 kb on - strand, within HP15_3161 at 3315.837 kb on - strand, within HP15_3161 at 3315.867 kb on + strand, within HP15_3161 at 3315.894 kb on - strand, within HP15_3161 at 3315.990 kb on + strand, within HP15_3161 at 3315.999 kb on - strand, within HP15_3161 at 3316.065 kb on + strand, within HP15_3161 at 3316.134 kb on + strand at 3316.141 kb on - strand at 3316.163 kb on - strand at 3316.214 kb on - strand at 3316.222 kb on + strand at 3316.249 kb on - strand at 3316.264 kb on - strand at 3316.264 kb on - strand at 3316.298 kb on + strand at 3316.325 kb on - strand, within HP15_3162 at 3316.376 kb on - strand, within HP15_3162 at 3316.383 kb on + strand, within HP15_3162 at 3316.514 kb on - strand, within HP15_3162 at 3316.529 kb on + strand, within HP15_3162 at 3316.572 kb on - strand, within HP15_3162 at 3316.614 kb on + strand, within HP15_3162 at 3316.622 kb on - strand at 3316.622 kb on - strand at 3316.635 kb on + strand at 3316.698 kb on + strand, within HP15_3163 at 3316.706 kb on - strand, within HP15_3163 at 3316.780 kb on + strand at 3316.785 kb on + strand at 3316.851 kb on + strand at 3317.042 kb on - strand at 3317.112 kb on + strand at 3317.118 kb on - strand at 3317.209 kb on - strand at 3317.209 kb on - strand at 3317.228 kb on + strand at 3317.258 kb on - strand, within HP15_3164 at 3317.270 kb on - strand, within HP15_3164 at 3317.272 kb on + strand, within HP15_3164 at 3317.272 kb on + strand, within HP15_3164 at 3317.272 kb on + strand, within HP15_3164 at 3317.470 kb on - strand, within HP15_3164 at 3317.490 kb on - strand, within HP15_3164 at 3317.506 kb on - strand, within HP15_3164 at 3317.614 kb on - strand, within HP15_3164
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM remove 3,315,754 - HP15_3161 0.54 +0.2 3,315,815 - HP15_3161 0.60 -1.1 3,315,821 - HP15_3161 0.60 +0.0 3,315,837 - HP15_3161 0.62 +0.2 3,315,867 + HP15_3161 0.65 -0.1 3,315,894 - HP15_3161 0.68 -0.3 3,315,990 + HP15_3161 0.77 -1.6 3,315,999 - HP15_3161 0.78 -0.4 3,316,065 + HP15_3161 0.85 +0.2 3,316,134 + +0.1 3,316,141 - -0.5 3,316,163 - +1.6 3,316,214 - -0.1 3,316,222 + +0.0 3,316,249 - +0.5 3,316,264 - -0.3 3,316,264 - +0.3 3,316,298 + +0.2 3,316,325 - HP15_3162 0.15 -0.9 3,316,376 - HP15_3162 0.28 +0.2 3,316,383 + HP15_3162 0.30 +0.2 3,316,514 - HP15_3162 0.64 -0.1 3,316,529 + HP15_3162 0.67 +0.4 3,316,572 - HP15_3162 0.79 +0.9 3,316,614 + HP15_3162 0.89 -0.9 3,316,622 - +0.1 3,316,622 - +1.1 3,316,635 + +0.3 3,316,698 + HP15_3163 0.41 -1.3 3,316,706 - HP15_3163 0.48 -0.0 3,316,780 + -0.4 3,316,785 + +1.7 3,316,851 + +0.7 3,317,042 - -0.9 3,317,112 + +0.2 3,317,118 - +0.6 3,317,209 - +0.3 3,317,209 - -0.6 3,317,228 + -0.1 3,317,258 - HP15_3164 0.11 -0.1 3,317,270 - HP15_3164 0.11 +0.2 3,317,272 + HP15_3164 0.11 +0.3 3,317,272 + HP15_3164 0.11 -0.1 3,317,272 + HP15_3164 0.11 -0.5 3,317,470 - HP15_3164 0.22 +0.3 3,317,490 - HP15_3164 0.23 +0.3 3,317,506 - HP15_3164 0.24 +0.7 3,317,614 - HP15_3164 0.30 +0.4
Or see this region's nucleotide sequence