Strain Fitness in Marinobacter adhaerens HP15 around HP15_3034

Experiment: m.b. Cholin acetate 76.57 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3032 and HP15_3033 are separated by 3 nucleotidesHP15_3033 and HP15_3034 are separated by 159 nucleotidesHP15_3034 and HP15_3035 are separated by 16 nucleotides HP15_3032: HP15_3032 - amino acid ABC transporter, inner membrane subunit, at 3,176,324 to 3,177,067 _3032 HP15_3033: HP15_3033 - amino acid ABC transporter, inner membrane subunit, at 3,177,071 to 3,177,793 _3033 HP15_3034: HP15_3034 - succinylglutamate desuccinylase, at 3,177,953 to 3,179,008 _3034 HP15_3035: HP15_3035 - transporter, AcrB/D/F family, at 3,179,025 to 3,182,051 _3035 Position (kb) 3177 3178 3179 3180Strain fitness (log2 ratio) -2 -1 0 1at 3177.053 kb on + strandat 3177.053 kb on + strandat 3177.144 kb on - strand, within HP15_3033at 3177.159 kb on + strand, within HP15_3033at 3177.239 kb on + strand, within HP15_3033at 3177.262 kb on + strand, within HP15_3033at 3177.270 kb on - strand, within HP15_3033at 3177.304 kb on + strand, within HP15_3033at 3177.535 kb on + strand, within HP15_3033at 3177.565 kb on - strand, within HP15_3033at 3177.565 kb on - strand, within HP15_3033at 3177.570 kb on - strand, within HP15_3033at 3177.629 kb on + strand, within HP15_3033at 3177.720 kb on + strand, within HP15_3033at 3177.971 kb on + strandat 3177.981 kb on + strandat 3178.004 kb on + strandat 3178.044 kb on - strandat 3178.079 kb on + strand, within HP15_3034at 3178.195 kb on - strand, within HP15_3034at 3178.221 kb on - strand, within HP15_3034at 3178.244 kb on + strand, within HP15_3034at 3178.326 kb on - strand, within HP15_3034at 3178.326 kb on - strand, within HP15_3034at 3178.365 kb on - strand, within HP15_3034at 3178.380 kb on + strand, within HP15_3034at 3178.570 kb on + strand, within HP15_3034at 3178.620 kb on - strand, within HP15_3034at 3178.648 kb on + strand, within HP15_3034at 3178.674 kb on - strand, within HP15_3034at 3178.726 kb on + strand, within HP15_3034at 3178.734 kb on - strand, within HP15_3034at 3178.768 kb on + strandat 3178.776 kb on - strand, within HP15_3034at 3178.865 kb on + strand, within HP15_3034at 3178.898 kb on - strand, within HP15_3034at 3179.013 kb on + strandat 3179.023 kb on + strandat 3179.045 kb on - strandat 3179.073 kb on + strandat 3179.142 kb on + strandat 3179.150 kb on - strandat 3179.237 kb on + strandat 3179.237 kb on + strandat 3179.245 kb on - strandat 3179.325 kb on - strandat 3179.376 kb on + strand, within HP15_3035at 3179.438 kb on + strand, within HP15_3035at 3179.461 kb on + strand, within HP15_3035at 3179.469 kb on - strand, within HP15_3035at 3179.469 kb on - strand, within HP15_3035at 3179.496 kb on + strand, within HP15_3035at 3179.523 kb on - strand, within HP15_3035at 3179.740 kb on + strand, within HP15_3035at 3179.740 kb on + strand, within HP15_3035at 3179.740 kb on + strand, within HP15_3035at 3179.831 kb on + strand, within HP15_3035at 3179.882 kb on - strand, within HP15_3035at 3179.922 kb on + strand, within HP15_3035at 3179.992 kb on - strand, within HP15_3035

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM
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3,177,053 + +0.1
3,177,053 + +0.7
3,177,144 - HP15_3033 0.10 +0.5
3,177,159 + HP15_3033 0.12 -0.7
3,177,239 + HP15_3033 0.23 -0.3
3,177,262 + HP15_3033 0.26 +0.8
3,177,270 - HP15_3033 0.28 +0.4
3,177,304 + HP15_3033 0.32 +0.7
3,177,535 + HP15_3033 0.64 +0.3
3,177,565 - HP15_3033 0.68 -0.3
3,177,565 - HP15_3033 0.68 -0.4
3,177,570 - HP15_3033 0.69 +0.7
3,177,629 + HP15_3033 0.77 -0.1
3,177,720 + HP15_3033 0.90 +0.2
3,177,971 + +0.4
3,177,981 + -0.0
3,178,004 + -1.1
3,178,044 - -1.1
3,178,079 + HP15_3034 0.12 -0.4
3,178,195 - HP15_3034 0.23 +0.4
3,178,221 - HP15_3034 0.25 +0.2
3,178,244 + HP15_3034 0.28 -0.9
3,178,326 - HP15_3034 0.35 -0.6
3,178,326 - HP15_3034 0.35 -0.1
3,178,365 - HP15_3034 0.39 -1.1
3,178,380 + HP15_3034 0.40 -1.0
3,178,570 + HP15_3034 0.58 -1.8
3,178,620 - HP15_3034 0.63 -1.0
3,178,648 + HP15_3034 0.66 -1.3
3,178,674 - HP15_3034 0.68 -1.2
3,178,726 + HP15_3034 0.73 +0.1
3,178,734 - HP15_3034 0.74 -1.0
3,178,768 + -0.1
3,178,776 - HP15_3034 0.78 -0.6
3,178,865 + HP15_3034 0.86 -0.8
3,178,898 - HP15_3034 0.89 -0.5
3,179,013 + -0.0
3,179,023 + +0.3
3,179,045 - -0.6
3,179,073 + +0.3
3,179,142 + +0.3
3,179,150 - -0.5
3,179,237 + +1.2
3,179,237 + +0.5
3,179,245 - +0.1
3,179,325 - -0.2
3,179,376 + HP15_3035 0.12 -0.8
3,179,438 + HP15_3035 0.14 +0.1
3,179,461 + HP15_3035 0.14 -0.1
3,179,469 - HP15_3035 0.15 +0.2
3,179,469 - HP15_3035 0.15 -0.1
3,179,496 + HP15_3035 0.16 +0.1
3,179,523 - HP15_3035 0.16 -0.4
3,179,740 + HP15_3035 0.24 -0.1
3,179,740 + HP15_3035 0.24 +0.4
3,179,740 + HP15_3035 0.24 +0.5
3,179,831 + HP15_3035 0.27 +0.8
3,179,882 - HP15_3035 0.28 -0.0
3,179,922 + HP15_3035 0.30 +0.8
3,179,992 - HP15_3035 0.32 -0.5

Or see this region's nucleotide sequence