Experiment: m.b. Cholin acetate 76.57 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2838 and HP15_2839 are separated by 27 nucleotides HP15_2839 and HP15_2840 are separated by 134 nucleotides
HP15_2838: HP15_2838 - oxidoreductase, short chain dehydrogenase/reductase family-like protein, at 2,979,815 to 2,980,588
_2838
HP15_2839: HP15_2839 - protein containing transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal domain, at 2,980,616 to 2,981,263
_2839
HP15_2840: HP15_2840 - conserved hypothetical protein, secreted, at 2,981,398 to 2,982,681
_2840
Position (kb)
2980
2981
2982 Strain fitness (log2 ratio)
-1
0
1 at 2979.671 kb on + strand at 2979.671 kb on + strand at 2979.683 kb on + strand at 2979.702 kb on - strand at 2979.704 kb on + strand at 2979.830 kb on - strand at 2979.945 kb on - strand, within HP15_2838 at 2980.237 kb on + strand, within HP15_2838 at 2980.249 kb on + strand, within HP15_2838 at 2980.331 kb on + strand, within HP15_2838 at 2980.346 kb on - strand, within HP15_2838 at 2980.388 kb on - strand, within HP15_2838 at 2980.507 kb on + strand, within HP15_2838 at 2980.527 kb on + strand at 2980.538 kb on + strand at 2980.546 kb on - strand at 2980.577 kb on + strand at 2980.582 kb on + strand at 2980.590 kb on - strand at 2980.693 kb on - strand, within HP15_2839 at 2980.740 kb on + strand, within HP15_2839 at 2980.748 kb on - strand, within HP15_2839 at 2980.817 kb on - strand, within HP15_2839 at 2980.867 kb on + strand, within HP15_2839 at 2980.955 kb on - strand, within HP15_2839 at 2981.141 kb on - strand, within HP15_2839 at 2981.177 kb on + strand, within HP15_2839 at 2981.211 kb on + strand at 2981.219 kb on - strand at 2981.221 kb on - strand at 2981.221 kb on - strand at 2981.231 kb on + strand at 2981.349 kb on - strand at 2981.356 kb on + strand at 2981.362 kb on + strand at 2981.368 kb on + strand at 2981.382 kb on - strand at 2981.382 kb on - strand at 2981.428 kb on + strand at 2981.538 kb on + strand, within HP15_2840 at 2981.545 kb on - strand, within HP15_2840 at 2981.575 kb on + strand, within HP15_2840 at 2981.712 kb on + strand, within HP15_2840 at 2981.767 kb on + strand, within HP15_2840 at 2981.775 kb on - strand, within HP15_2840 at 2981.834 kb on + strand, within HP15_2840 at 2981.842 kb on - strand, within HP15_2840 at 2981.889 kb on - strand, within HP15_2840 at 2981.892 kb on + strand, within HP15_2840 at 2981.893 kb on + strand, within HP15_2840 at 2981.901 kb on - strand, within HP15_2840 at 2981.997 kb on + strand, within HP15_2840 at 2982.035 kb on + strand, within HP15_2840 at 2982.035 kb on + strand, within HP15_2840 at 2982.035 kb on + strand, within HP15_2840 at 2982.035 kb on + strand, within HP15_2840 at 2982.035 kb on + strand, within HP15_2840 at 2982.043 kb on - strand, within HP15_2840 at 2982.043 kb on - strand, within HP15_2840 at 2982.071 kb on - strand, within HP15_2840 at 2982.088 kb on + strand, within HP15_2840 at 2982.210 kb on + strand, within HP15_2840 at 2982.210 kb on + strand, within HP15_2840 at 2982.210 kb on + strand, within HP15_2840 at 2982.218 kb on - strand, within HP15_2840 at 2982.218 kb on - strand, within HP15_2840
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM remove 2,979,671 + -1.2 2,979,671 + -0.1 2,979,683 + -0.4 2,979,702 - -0.1 2,979,704 + +0.3 2,979,830 - -0.1 2,979,945 - HP15_2838 0.17 +0.5 2,980,237 + HP15_2838 0.55 +0.0 2,980,249 + HP15_2838 0.56 -0.3 2,980,331 + HP15_2838 0.67 -0.2 2,980,346 - HP15_2838 0.69 -0.2 2,980,388 - HP15_2838 0.74 -0.5 2,980,507 + HP15_2838 0.89 -0.2 2,980,527 + +0.2 2,980,538 + +0.1 2,980,546 - +0.3 2,980,577 + +0.7 2,980,582 + +0.1 2,980,590 - +0.5 2,980,693 - HP15_2839 0.12 -0.1 2,980,740 + HP15_2839 0.19 -0.2 2,980,748 - HP15_2839 0.20 -1.5 2,980,817 - HP15_2839 0.31 -1.1 2,980,867 + HP15_2839 0.39 -0.2 2,980,955 - HP15_2839 0.52 -0.6 2,981,141 - HP15_2839 0.81 -0.2 2,981,177 + HP15_2839 0.87 -0.8 2,981,211 + -0.6 2,981,219 - -0.5 2,981,221 - -0.5 2,981,221 - +0.3 2,981,231 + -0.0 2,981,349 - -0.4 2,981,356 + +0.0 2,981,362 + +0.3 2,981,368 + +0.5 2,981,382 - +0.5 2,981,382 - +0.2 2,981,428 + -0.5 2,981,538 + HP15_2840 0.11 -0.7 2,981,545 - HP15_2840 0.11 +0.3 2,981,575 + HP15_2840 0.14 +0.2 2,981,712 + HP15_2840 0.24 -0.1 2,981,767 + HP15_2840 0.29 +0.5 2,981,775 - HP15_2840 0.29 -0.3 2,981,834 + HP15_2840 0.34 +0.0 2,981,842 - HP15_2840 0.35 -0.1 2,981,889 - HP15_2840 0.38 +0.5 2,981,892 + HP15_2840 0.38 +0.8 2,981,893 + HP15_2840 0.39 +0.1 2,981,901 - HP15_2840 0.39 -0.4 2,981,997 + HP15_2840 0.47 -0.0 2,982,035 + HP15_2840 0.50 +0.3 2,982,035 + HP15_2840 0.50 -0.1 2,982,035 + HP15_2840 0.50 +0.2 2,982,035 + HP15_2840 0.50 -0.5 2,982,035 + HP15_2840 0.50 -0.2 2,982,043 - HP15_2840 0.50 +0.3 2,982,043 - HP15_2840 0.50 -0.2 2,982,071 - HP15_2840 0.52 +0.9 2,982,088 + HP15_2840 0.54 +0.6 2,982,210 + HP15_2840 0.63 +0.4 2,982,210 + HP15_2840 0.63 +1.0 2,982,210 + HP15_2840 0.63 +0.2 2,982,218 - HP15_2840 0.64 +0.2 2,982,218 - HP15_2840 0.64 +1.2
Or see this region's nucleotide sequence