Strain Fitness in Marinobacter adhaerens HP15 around HP15_2839

Experiment: m.b. Cholin acetate 76.57 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2838 and HP15_2839 are separated by 27 nucleotidesHP15_2839 and HP15_2840 are separated by 134 nucleotides HP15_2838: HP15_2838 - oxidoreductase, short chain dehydrogenase/reductase family-like protein, at 2,979,815 to 2,980,588 _2838 HP15_2839: HP15_2839 - protein containing transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal domain, at 2,980,616 to 2,981,263 _2839 HP15_2840: HP15_2840 - conserved hypothetical protein, secreted, at 2,981,398 to 2,982,681 _2840 Position (kb) 2980 2981 2982Strain fitness (log2 ratio) -1 0 1at 2979.671 kb on + strandat 2979.671 kb on + strandat 2979.683 kb on + strandat 2979.702 kb on - strandat 2979.704 kb on + strandat 2979.830 kb on - strandat 2979.945 kb on - strand, within HP15_2838at 2980.237 kb on + strand, within HP15_2838at 2980.249 kb on + strand, within HP15_2838at 2980.331 kb on + strand, within HP15_2838at 2980.346 kb on - strand, within HP15_2838at 2980.388 kb on - strand, within HP15_2838at 2980.507 kb on + strand, within HP15_2838at 2980.527 kb on + strandat 2980.538 kb on + strandat 2980.546 kb on - strandat 2980.577 kb on + strandat 2980.582 kb on + strandat 2980.590 kb on - strandat 2980.693 kb on - strand, within HP15_2839at 2980.740 kb on + strand, within HP15_2839at 2980.748 kb on - strand, within HP15_2839at 2980.817 kb on - strand, within HP15_2839at 2980.867 kb on + strand, within HP15_2839at 2980.955 kb on - strand, within HP15_2839at 2981.141 kb on - strand, within HP15_2839at 2981.177 kb on + strand, within HP15_2839at 2981.211 kb on + strandat 2981.219 kb on - strandat 2981.221 kb on - strandat 2981.221 kb on - strandat 2981.231 kb on + strandat 2981.349 kb on - strandat 2981.356 kb on + strandat 2981.362 kb on + strandat 2981.368 kb on + strandat 2981.382 kb on - strandat 2981.382 kb on - strandat 2981.428 kb on + strandat 2981.538 kb on + strand, within HP15_2840at 2981.545 kb on - strand, within HP15_2840at 2981.575 kb on + strand, within HP15_2840at 2981.712 kb on + strand, within HP15_2840at 2981.767 kb on + strand, within HP15_2840at 2981.775 kb on - strand, within HP15_2840at 2981.834 kb on + strand, within HP15_2840at 2981.842 kb on - strand, within HP15_2840at 2981.889 kb on - strand, within HP15_2840at 2981.892 kb on + strand, within HP15_2840at 2981.893 kb on + strand, within HP15_2840at 2981.901 kb on - strand, within HP15_2840at 2981.997 kb on + strand, within HP15_2840at 2982.035 kb on + strand, within HP15_2840at 2982.035 kb on + strand, within HP15_2840at 2982.035 kb on + strand, within HP15_2840at 2982.035 kb on + strand, within HP15_2840at 2982.035 kb on + strand, within HP15_2840at 2982.043 kb on - strand, within HP15_2840at 2982.043 kb on - strand, within HP15_2840at 2982.071 kb on - strand, within HP15_2840at 2982.088 kb on + strand, within HP15_2840at 2982.210 kb on + strand, within HP15_2840at 2982.210 kb on + strand, within HP15_2840at 2982.210 kb on + strand, within HP15_2840at 2982.218 kb on - strand, within HP15_2840at 2982.218 kb on - strand, within HP15_2840

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM
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2,979,671 + -1.2
2,979,671 + -0.1
2,979,683 + -0.4
2,979,702 - -0.1
2,979,704 + +0.3
2,979,830 - -0.1
2,979,945 - HP15_2838 0.17 +0.5
2,980,237 + HP15_2838 0.55 +0.0
2,980,249 + HP15_2838 0.56 -0.3
2,980,331 + HP15_2838 0.67 -0.2
2,980,346 - HP15_2838 0.69 -0.2
2,980,388 - HP15_2838 0.74 -0.5
2,980,507 + HP15_2838 0.89 -0.2
2,980,527 + +0.2
2,980,538 + +0.1
2,980,546 - +0.3
2,980,577 + +0.7
2,980,582 + +0.1
2,980,590 - +0.5
2,980,693 - HP15_2839 0.12 -0.1
2,980,740 + HP15_2839 0.19 -0.2
2,980,748 - HP15_2839 0.20 -1.5
2,980,817 - HP15_2839 0.31 -1.1
2,980,867 + HP15_2839 0.39 -0.2
2,980,955 - HP15_2839 0.52 -0.6
2,981,141 - HP15_2839 0.81 -0.2
2,981,177 + HP15_2839 0.87 -0.8
2,981,211 + -0.6
2,981,219 - -0.5
2,981,221 - -0.5
2,981,221 - +0.3
2,981,231 + -0.0
2,981,349 - -0.4
2,981,356 + +0.0
2,981,362 + +0.3
2,981,368 + +0.5
2,981,382 - +0.5
2,981,382 - +0.2
2,981,428 + -0.5
2,981,538 + HP15_2840 0.11 -0.7
2,981,545 - HP15_2840 0.11 +0.3
2,981,575 + HP15_2840 0.14 +0.2
2,981,712 + HP15_2840 0.24 -0.1
2,981,767 + HP15_2840 0.29 +0.5
2,981,775 - HP15_2840 0.29 -0.3
2,981,834 + HP15_2840 0.34 +0.0
2,981,842 - HP15_2840 0.35 -0.1
2,981,889 - HP15_2840 0.38 +0.5
2,981,892 + HP15_2840 0.38 +0.8
2,981,893 + HP15_2840 0.39 +0.1
2,981,901 - HP15_2840 0.39 -0.4
2,981,997 + HP15_2840 0.47 -0.0
2,982,035 + HP15_2840 0.50 +0.3
2,982,035 + HP15_2840 0.50 -0.1
2,982,035 + HP15_2840 0.50 +0.2
2,982,035 + HP15_2840 0.50 -0.5
2,982,035 + HP15_2840 0.50 -0.2
2,982,043 - HP15_2840 0.50 +0.3
2,982,043 - HP15_2840 0.50 -0.2
2,982,071 - HP15_2840 0.52 +0.9
2,982,088 + HP15_2840 0.54 +0.6
2,982,210 + HP15_2840 0.63 +0.4
2,982,210 + HP15_2840 0.63 +1.0
2,982,210 + HP15_2840 0.63 +0.2
2,982,218 - HP15_2840 0.64 +0.2
2,982,218 - HP15_2840 0.64 +1.2

Or see this region's nucleotide sequence