Experiment: m.b. Cholin acetate 76.57 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2701 and HP15_2702 are separated by 75 nucleotides HP15_2702 and HP15_2703 are separated by 120 nucleotides
HP15_2701: HP15_2701 - phenylacetic acid degradation oxidoreductase PaaK, at 2,852,657 to 2,853,736
_2701
HP15_2702: HP15_2702 - bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase, at 2,853,812 to 2,855,869
_2702
HP15_2703: HP15_2703 - branched-chain amino acid ABC transporter ATP-binding protein, at 2,855,990 to 2,857,354
_2703
Position (kb)
2853
2854
2855
2856 Strain fitness (log2 ratio)
-2
-1
0
1 at 2852.850 kb on + strand, within HP15_2701 at 2853.032 kb on - strand, within HP15_2701 at 2853.176 kb on - strand, within HP15_2701 at 2853.760 kb on + strand at 2854.013 kb on + strand at 2854.042 kb on - strand, within HP15_2702 at 2854.242 kb on + strand, within HP15_2702 at 2854.370 kb on + strand, within HP15_2702 at 2854.596 kb on - strand, within HP15_2702 at 2854.597 kb on + strand, within HP15_2702 at 2854.741 kb on + strand, within HP15_2702 at 2854.749 kb on - strand, within HP15_2702 at 2854.782 kb on + strand, within HP15_2702 at 2854.834 kb on - strand, within HP15_2702 at 2855.072 kb on + strand, within HP15_2702 at 2855.097 kb on + strand, within HP15_2702 at 2855.106 kb on + strand, within HP15_2702 at 2855.129 kb on - strand, within HP15_2702 at 2855.572 kb on + strand, within HP15_2702 at 2855.736 kb on - strand at 2855.782 kb on + strand at 2855.785 kb on - strand at 2855.916 kb on - strand at 2855.941 kb on + strand at 2855.949 kb on - strand at 2856.093 kb on + strand at 2856.146 kb on - strand, within HP15_2703 at 2856.293 kb on - strand, within HP15_2703 at 2856.393 kb on - strand, within HP15_2703 at 2856.393 kb on - strand, within HP15_2703 at 2856.393 kb on - strand, within HP15_2703 at 2856.393 kb on - strand, within HP15_2703 at 2856.469 kb on + strand, within HP15_2703 at 2856.558 kb on + strand, within HP15_2703 at 2856.558 kb on + strand, within HP15_2703 at 2856.626 kb on - strand, within HP15_2703 at 2856.626 kb on - strand, within HP15_2703 at 2856.666 kb on + strand, within HP15_2703 at 2856.719 kb on + strand, within HP15_2703
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM remove 2,852,850 + HP15_2701 0.18 +0.3 2,853,032 - HP15_2701 0.35 -0.6 2,853,176 - HP15_2701 0.48 -0.7 2,853,760 + -0.1 2,854,013 + -0.5 2,854,042 - HP15_2702 0.11 -2.0 2,854,242 + HP15_2702 0.21 -0.6 2,854,370 + HP15_2702 0.27 -0.0 2,854,596 - HP15_2702 0.38 -0.7 2,854,597 + HP15_2702 0.38 +0.3 2,854,741 + HP15_2702 0.45 -0.3 2,854,749 - HP15_2702 0.46 +0.4 2,854,782 + HP15_2702 0.47 -1.9 2,854,834 - HP15_2702 0.50 -0.0 2,855,072 + HP15_2702 0.61 -1.1 2,855,097 + HP15_2702 0.62 -1.0 2,855,106 + HP15_2702 0.63 -0.7 2,855,129 - HP15_2702 0.64 -0.3 2,855,572 + HP15_2702 0.86 -1.3 2,855,736 - -2.2 2,855,782 + -1.3 2,855,785 - -0.1 2,855,916 - +0.9 2,855,941 + +0.4 2,855,949 - -0.9 2,856,093 + +0.2 2,856,146 - HP15_2703 0.11 +0.0 2,856,293 - HP15_2703 0.22 -0.1 2,856,393 - HP15_2703 0.30 -0.2 2,856,393 - HP15_2703 0.30 -0.0 2,856,393 - HP15_2703 0.30 -0.2 2,856,393 - HP15_2703 0.30 -1.4 2,856,469 + HP15_2703 0.35 +0.1 2,856,558 + HP15_2703 0.42 +0.3 2,856,558 + HP15_2703 0.42 -0.2 2,856,626 - HP15_2703 0.47 +0.2 2,856,626 - HP15_2703 0.47 -0.4 2,856,666 + HP15_2703 0.50 -0.3 2,856,719 + HP15_2703 0.53 +0.6
Or see this region's nucleotide sequence