Experiment: m.b. Cholin acetate 76.57 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2640 and HP15_2641 overlap by 11 nucleotides HP15_2641 and HP15_2642 are separated by 22 nucleotides HP15_2642 and HP15_2643 are separated by 190 nucleotides
HP15_2640: HP15_2640 - arginine/ornithine succinyltransferase, at 2,789,974 to 2,791,113
_2640
HP15_2641: HP15_2641 - conserved hypothetical protein, at 2,791,103 to 2,791,909
_2641
HP15_2642: HP15_2642 - protein-L-isoaspartate O-methyltransferase, at 2,791,932 to 2,792,588
_2642
HP15_2643: HP15_2643 - conserved hypothetical protein, at 2,792,779 to 2,793,444
_2643
Position (kb)
2791
2792 Strain fitness (log2 ratio)
-2
-1
0
1 at 2790.118 kb on + strand, within HP15_2640 at 2790.118 kb on + strand, within HP15_2640 at 2790.175 kb on + strand, within HP15_2640 at 2790.175 kb on + strand, within HP15_2640 at 2790.232 kb on + strand, within HP15_2640 at 2790.232 kb on + strand, within HP15_2640 at 2790.325 kb on - strand, within HP15_2640 at 2790.325 kb on - strand, within HP15_2640 at 2790.524 kb on + strand, within HP15_2640 at 2790.539 kb on + strand, within HP15_2640 at 2790.568 kb on + strand, within HP15_2640 at 2790.612 kb on - strand, within HP15_2640 at 2790.630 kb on - strand, within HP15_2640 at 2790.811 kb on - strand, within HP15_2640 at 2790.914 kb on + strand, within HP15_2640 at 2790.914 kb on + strand, within HP15_2640 at 2790.934 kb on + strand, within HP15_2640 at 2790.961 kb on - strand, within HP15_2640 at 2791.038 kb on + strand at 2791.038 kb on + strand at 2791.046 kb on - strand at 2791.046 kb on - strand at 2791.046 kb on - strand at 2791.046 kb on - strand at 2791.049 kb on + strand at 2791.112 kb on + strand at 2791.112 kb on + strand at 2791.120 kb on - strand at 2791.120 kb on - strand at 2791.385 kb on + strand, within HP15_2641 at 2791.466 kb on - strand, within HP15_2641 at 2791.467 kb on - strand, within HP15_2641 at 2791.479 kb on - strand, within HP15_2641 at 2791.530 kb on + strand, within HP15_2641 at 2791.630 kb on + strand, within HP15_2641 at 2791.675 kb on - strand, within HP15_2641 at 2791.965 kb on + strand at 2791.973 kb on - strand at 2792.045 kb on + strand, within HP15_2642 at 2792.045 kb on + strand, within HP15_2642 at 2792.059 kb on + strand, within HP15_2642 at 2792.059 kb on + strand, within HP15_2642 at 2792.231 kb on - strand, within HP15_2642 at 2792.258 kb on + strand, within HP15_2642 at 2792.266 kb on - strand, within HP15_2642 at 2792.310 kb on + strand, within HP15_2642 at 2792.357 kb on - strand, within HP15_2642 at 2792.383 kb on + strand, within HP15_2642 at 2792.413 kb on - strand, within HP15_2642 at 2792.438 kb on - strand, within HP15_2642 at 2792.565 kb on + strand at 2792.577 kb on + strand at 2792.580 kb on - strand at 2792.822 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM remove 2,790,118 + HP15_2640 0.13 +0.7 2,790,118 + HP15_2640 0.13 +0.8 2,790,175 + HP15_2640 0.18 -0.3 2,790,175 + HP15_2640 0.18 -0.7 2,790,232 + HP15_2640 0.23 +0.1 2,790,232 + HP15_2640 0.23 -0.2 2,790,325 - HP15_2640 0.31 +0.8 2,790,325 - HP15_2640 0.31 -0.1 2,790,524 + HP15_2640 0.48 +1.1 2,790,539 + HP15_2640 0.50 +0.1 2,790,568 + HP15_2640 0.52 +0.0 2,790,612 - HP15_2640 0.56 -0.2 2,790,630 - HP15_2640 0.58 +1.1 2,790,811 - HP15_2640 0.73 +0.7 2,790,914 + HP15_2640 0.82 -0.5 2,790,914 + HP15_2640 0.82 -1.0 2,790,934 + HP15_2640 0.84 +0.3 2,790,961 - HP15_2640 0.87 -0.0 2,791,038 + -0.8 2,791,038 + +0.2 2,791,046 - +0.8 2,791,046 - +0.7 2,791,046 - -0.4 2,791,046 - -0.0 2,791,049 + -0.1 2,791,112 + -0.9 2,791,112 + +0.8 2,791,120 - -0.3 2,791,120 - -0.1 2,791,385 + HP15_2641 0.35 -0.2 2,791,466 - HP15_2641 0.45 -0.7 2,791,467 - HP15_2641 0.45 -1.9 2,791,479 - HP15_2641 0.47 +0.4 2,791,530 + HP15_2641 0.53 +0.0 2,791,630 + HP15_2641 0.65 -0.3 2,791,675 - HP15_2641 0.71 -0.8 2,791,965 + +0.7 2,791,973 - -0.3 2,792,045 + HP15_2642 0.17 -0.1 2,792,045 + HP15_2642 0.17 +0.7 2,792,059 + HP15_2642 0.19 +0.4 2,792,059 + HP15_2642 0.19 -0.1 2,792,231 - HP15_2642 0.46 +0.6 2,792,258 + HP15_2642 0.50 -0.6 2,792,266 - HP15_2642 0.51 +0.3 2,792,310 + HP15_2642 0.58 +0.5 2,792,357 - HP15_2642 0.65 +0.1 2,792,383 + HP15_2642 0.69 +0.0 2,792,413 - HP15_2642 0.73 +0.2 2,792,438 - HP15_2642 0.77 +0.6 2,792,565 + -0.4 2,792,577 + -0.3 2,792,580 - -1.1 2,792,822 + +0.0
Or see this region's nucleotide sequence