Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0227

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0226 and Psest_0227 overlap by 8 nucleotidesPsest_0227 and Psest_0228 are separated by 92 nucleotides Psest_0226: Psest_0226 - Domain of unknown function (DUF3482)./GTPase of unknown function., at 234,613 to 235,986 _0226 Psest_0227: Psest_0227 - Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific, at 235,979 to 237,373 _0227 Psest_0228: Psest_0228 - Glycerophosphoryl diester phosphodiesterase, at 237,466 to 238,581 _0228 Position (kb) 235 236 237 238Strain fitness (log2 ratio) -1 0 1 2at 235.073 kb on - strand, within Psest_0226at 235.161 kb on - strand, within Psest_0226at 235.161 kb on - strand, within Psest_0226at 235.590 kb on - strand, within Psest_0226at 235.590 kb on - strand, within Psest_0226at 235.590 kb on - strand, within Psest_0226at 235.590 kb on - strand, within Psest_0226at 235.590 kb on - strand, within Psest_0226at 235.625 kb on + strand, within Psest_0226at 235.626 kb on - strand, within Psest_0226at 235.626 kb on - strand, within Psest_0226at 235.626 kb on - strand, within Psest_0226at 235.626 kb on - strand, within Psest_0226at 235.769 kb on + strand, within Psest_0226at 236.105 kb on + strandat 236.562 kb on + strand, within Psest_0227at 236.562 kb on + strand, within Psest_0227at 236.563 kb on - strand, within Psest_0227at 236.563 kb on - strand, within Psest_0227at 236.563 kb on - strand, within Psest_0227at 236.791 kb on + strand, within Psest_0227at 236.791 kb on + strand, within Psest_0227at 236.791 kb on + strand, within Psest_0227at 236.792 kb on - strand, within Psest_0227at 236.831 kb on + strand, within Psest_0227at 236.843 kb on + strandat 237.636 kb on - strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.765 kb on + strand, within Psest_0228at 237.766 kb on - strand, within Psest_0228at 237.766 kb on - strand, within Psest_0228at 237.801 kb on - strand, within Psest_0228at 237.833 kb on + strand, within Psest_0228at 237.834 kb on - strand, within Psest_0228at 237.921 kb on + strand, within Psest_0228at 237.922 kb on - strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.947 kb on + strand, within Psest_0228at 238.361 kb on + strand, within Psest_0228at 238.361 kb on + strand, within Psest_0228at 238.362 kb on - strand, within Psest_0228at 238.362 kb on - strand, within Psest_0228at 238.362 kb on - strand, within Psest_0228

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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235,073 - Psest_0226 0.33 +0.2
235,161 - Psest_0226 0.40 +0.4
235,161 - Psest_0226 0.40 -1.2
235,590 - Psest_0226 0.71 +0.6
235,590 - Psest_0226 0.71 -0.2
235,590 - Psest_0226 0.71 -0.8
235,590 - Psest_0226 0.71 +0.6
235,590 - Psest_0226 0.71 +1.2
235,625 + Psest_0226 0.74 +1.4
235,626 - Psest_0226 0.74 +0.4
235,626 - Psest_0226 0.74 +2.2
235,626 - Psest_0226 0.74 +1.2
235,626 - Psest_0226 0.74 +0.4
235,769 + Psest_0226 0.84 +1.7
236,105 + +1.4
236,562 + Psest_0227 0.42 -0.4
236,562 + Psest_0227 0.42 +2.2
236,563 - Psest_0227 0.42 +0.6
236,563 - Psest_0227 0.42 -0.7
236,563 - Psest_0227 0.42 +0.6
236,791 + Psest_0227 0.58 +0.2
236,791 + Psest_0227 0.58 +1.2
236,791 + Psest_0227 0.58 +2.2
236,792 - Psest_0227 0.58 -0.8
236,831 + Psest_0227 0.61 +0.2
236,843 + +1.2
237,636 - Psest_0228 0.15 +0.6
237,725 + Psest_0228 0.23 +0.6
237,725 + Psest_0228 0.23 -0.1
237,725 + Psest_0228 0.23 -0.5
237,725 + Psest_0228 0.23 -0.4
237,725 + Psest_0228 0.23 +1.6
237,725 + Psest_0228 0.23 -1.3
237,725 + Psest_0228 0.23 +0.0
237,725 + Psest_0228 0.23 +0.2
237,726 - Psest_0228 0.23 +1.2
237,726 - Psest_0228 0.23 -1.4
237,726 - Psest_0228 0.23 +0.6
237,726 - Psest_0228 0.23 +0.2
237,726 - Psest_0228 0.23 +2.7
237,726 - Psest_0228 0.23 +1.5
237,726 - Psest_0228 0.23 +1.2
237,726 - Psest_0228 0.23 -1.4
237,726 - Psest_0228 0.23 +0.2
237,726 - Psest_0228 0.23 -0.4
237,726 - Psest_0228 0.23 +0.6
237,765 + Psest_0228 0.27 +0.7
237,766 - Psest_0228 0.27 +0.7
237,766 - Psest_0228 0.27 +0.6
237,801 - Psest_0228 0.30 +0.2
237,833 + Psest_0228 0.33 +0.5
237,834 - Psest_0228 0.33 +0.4
237,921 + Psest_0228 0.41 +0.4
237,922 - Psest_0228 0.41 -0.4
237,923 + Psest_0228 0.41 -0.0
237,923 + Psest_0228 0.41 +0.2
237,923 + Psest_0228 0.41 +0.2
237,923 + Psest_0228 0.41 +1.0
237,923 + Psest_0228 0.41 +0.5
237,923 + Psest_0228 0.41 -0.1
237,923 + Psest_0228 0.41 +1.2
237,923 + Psest_0228 0.41 +0.2
237,923 + Psest_0228 0.41 -1.1
237,924 - Psest_0228 0.41 -1.2
237,924 - Psest_0228 0.41 +2.4
237,924 - Psest_0228 0.41 +0.6
237,924 - Psest_0228 0.41 +0.8
237,924 - Psest_0228 0.41 +0.7
237,924 - Psest_0228 0.41 -0.8
237,924 - Psest_0228 0.41 +1.2
237,924 - Psest_0228 0.41 +1.2
237,924 - Psest_0228 0.41 +0.4
237,924 - Psest_0228 0.41 -0.4
237,924 - Psest_0228 0.41 +0.2
237,924 - Psest_0228 0.41 +0.1
237,924 - Psest_0228 0.41 +1.2
237,924 - Psest_0228 0.41 -0.8
237,947 + Psest_0228 0.43 -0.4
238,361 + Psest_0228 0.80 -0.3
238,361 + Psest_0228 0.80 +0.6
238,362 - Psest_0228 0.80 +0.7
238,362 - Psest_0228 0.80 -1.2
238,362 - Psest_0228 0.80 -0.6

Or see this region's nucleotide sequence