Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2151 and Psest_2152 are separated by 10 nucleotides Psest_2152 and Psest_2153 overlap by 4 nucleotides Psest_2153 and Psest_2154 are separated by 22 nucleotides Psest_2154 and Psest_2155 are separated by 10 nucleotides
Psest_2151: Psest_2151 - formate dehydrogenase, alpha subunit, proteobacterial-type, at 2,297,209 to 2,300,274
_2151
Psest_2152: Psest_2152 - formate dehydrogenase, beta subunit, Fe-S containing, at 2,300,285 to 2,301,223
_2152
Psest_2153: Psest_2153 - formate dehydrogenase, gamma subunit, at 2,301,220 to 2,301,924
_2153
Psest_2154: Psest_2154 - formate dehydrogenase accessory protein FdhE, at 2,301,947 to 2,302,894
_2154
Psest_2155: Psest_2155 - hypothetical protein, at 2,302,905 to 2,303,069
_2155
Position (kb)
2301
2302 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2300.270 kb on + strand at 2300.271 kb on - strand at 2300.271 kb on - strand at 2300.271 kb on - strand at 2300.272 kb on + strand at 2300.272 kb on + strand at 2300.273 kb on - strand at 2300.273 kb on - strand at 2300.273 kb on - strand at 2300.273 kb on - strand at 2300.336 kb on - strand at 2300.486 kb on + strand, within Psest_2152 at 2300.486 kb on + strand, within Psest_2152 at 2300.486 kb on + strand, within Psest_2152 at 2300.486 kb on + strand, within Psest_2152 at 2300.486 kb on + strand, within Psest_2152 at 2300.486 kb on + strand, within Psest_2152 at 2300.487 kb on - strand, within Psest_2152 at 2300.487 kb on - strand, within Psest_2152 at 2300.487 kb on - strand, within Psest_2152 at 2300.655 kb on - strand, within Psest_2152 at 2300.741 kb on - strand, within Psest_2152 at 2300.766 kb on - strand, within Psest_2152 at 2300.766 kb on - strand, within Psest_2152 at 2300.876 kb on + strand, within Psest_2152 at 2300.877 kb on - strand, within Psest_2152 at 2300.877 kb on - strand, within Psest_2152 at 2300.933 kb on + strand, within Psest_2152 at 2300.933 kb on + strand, within Psest_2152 at 2300.933 kb on + strand, within Psest_2152 at 2300.934 kb on - strand, within Psest_2152 at 2300.934 kb on - strand, within Psest_2152 at 2300.934 kb on - strand, within Psest_2152 at 2300.969 kb on + strand, within Psest_2152 at 2300.969 kb on + strand, within Psest_2152 at 2300.969 kb on + strand, within Psest_2152 at 2300.969 kb on + strand, within Psest_2152 at 2300.970 kb on - strand, within Psest_2152 at 2300.970 kb on - strand, within Psest_2152 at 2301.002 kb on + strand, within Psest_2152 at 2301.003 kb on - strand, within Psest_2152 at 2301.003 kb on - strand, within Psest_2152 at 2301.119 kb on + strand, within Psest_2152 at 2301.119 kb on + strand, within Psest_2152 at 2301.119 kb on + strand, within Psest_2152 at 2301.119 kb on + strand, within Psest_2152 at 2301.120 kb on - strand, within Psest_2152 at 2301.120 kb on - strand, within Psest_2152 at 2301.120 kb on - strand, within Psest_2152 at 2301.120 kb on - strand, within Psest_2152 at 2301.120 kb on - strand, within Psest_2152 at 2301.236 kb on + strand at 2301.236 kb on + strand at 2301.236 kb on + strand at 2301.237 kb on - strand at 2301.237 kb on - strand at 2301.237 kb on - strand at 2301.337 kb on + strand, within Psest_2153 at 2301.337 kb on + strand, within Psest_2153 at 2301.338 kb on - strand, within Psest_2153 at 2301.403 kb on + strand, within Psest_2153 at 2301.403 kb on + strand, within Psest_2153 at 2301.403 kb on + strand, within Psest_2153 at 2301.577 kb on + strand, within Psest_2153 at 2301.577 kb on + strand, within Psest_2153 at 2301.739 kb on + strand, within Psest_2153 at 2301.830 kb on - strand, within Psest_2153 at 2302.147 kb on - strand, within Psest_2154 at 2302.147 kb on - strand, within Psest_2154 at 2302.297 kb on - strand, within Psest_2154 at 2302.297 kb on - strand, within Psest_2154 at 2302.673 kb on + strand, within Psest_2154 at 2302.673 kb on + strand, within Psest_2154 at 2302.673 kb on + strand, within Psest_2154 at 2302.748 kb on + strand, within Psest_2154 at 2302.748 kb on + strand, within Psest_2154 at 2302.749 kb on - strand, within Psest_2154 at 2302.749 kb on - strand, within Psest_2154 at 2302.749 kb on - strand, within Psest_2154 at 2302.865 kb on + strand at 2302.865 kb on + strand at 2302.866 kb on - strand at 2302.866 kb on - strand at 2302.893 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,300,270 + +1.8 2,300,271 - +0.3 2,300,271 - -0.7 2,300,271 - -0.1 2,300,272 + -1.3 2,300,272 + +1.1 2,300,273 - -1.3 2,300,273 - -0.3 2,300,273 - -0.2 2,300,273 - +0.4 2,300,336 - -0.4 2,300,486 + Psest_2152 0.21 +1.7 2,300,486 + Psest_2152 0.21 -0.3 2,300,486 + Psest_2152 0.21 +0.7 2,300,486 + Psest_2152 0.21 +0.2 2,300,486 + Psest_2152 0.21 +0.5 2,300,486 + Psest_2152 0.21 -0.2 2,300,487 - Psest_2152 0.22 +0.7 2,300,487 - Psest_2152 0.22 -2.1 2,300,487 - Psest_2152 0.22 +0.2 2,300,655 - Psest_2152 0.39 -0.1 2,300,741 - Psest_2152 0.49 -0.3 2,300,766 - Psest_2152 0.51 +0.1 2,300,766 - Psest_2152 0.51 -0.3 2,300,876 + Psest_2152 0.63 +0.4 2,300,877 - Psest_2152 0.63 +0.1 2,300,877 - Psest_2152 0.63 -0.1 2,300,933 + Psest_2152 0.69 +1.5 2,300,933 + Psest_2152 0.69 +0.2 2,300,933 + Psest_2152 0.69 -0.6 2,300,934 - Psest_2152 0.69 +0.1 2,300,934 - Psest_2152 0.69 -0.3 2,300,934 - Psest_2152 0.69 +0.9 2,300,969 + Psest_2152 0.73 +0.5 2,300,969 + Psest_2152 0.73 +0.5 2,300,969 + Psest_2152 0.73 +0.2 2,300,969 + Psest_2152 0.73 -0.7 2,300,970 - Psest_2152 0.73 -0.5 2,300,970 - Psest_2152 0.73 +0.5 2,301,002 + Psest_2152 0.76 +0.1 2,301,003 - Psest_2152 0.76 +0.2 2,301,003 - Psest_2152 0.76 -0.9 2,301,119 + Psest_2152 0.89 +1.1 2,301,119 + Psest_2152 0.89 +0.6 2,301,119 + Psest_2152 0.89 +0.1 2,301,119 + Psest_2152 0.89 +0.6 2,301,120 - Psest_2152 0.89 +0.2 2,301,120 - Psest_2152 0.89 -1.3 2,301,120 - Psest_2152 0.89 +0.0 2,301,120 - Psest_2152 0.89 +0.1 2,301,120 - Psest_2152 0.89 -1.5 2,301,236 + -0.1 2,301,236 + -0.5 2,301,236 + -0.2 2,301,237 - -1.3 2,301,237 - +0.4 2,301,237 - -1.0 2,301,337 + Psest_2153 0.17 -1.5 2,301,337 + Psest_2153 0.17 +0.3 2,301,338 - Psest_2153 0.17 -0.9 2,301,403 + Psest_2153 0.26 -0.5 2,301,403 + Psest_2153 0.26 -0.3 2,301,403 + Psest_2153 0.26 -1.5 2,301,577 + Psest_2153 0.51 -1.3 2,301,577 + Psest_2153 0.51 -1.1 2,301,739 + Psest_2153 0.74 -1.2 2,301,830 - Psest_2153 0.87 -1.1 2,302,147 - Psest_2154 0.21 +0.3 2,302,147 - Psest_2154 0.21 +1.1 2,302,297 - Psest_2154 0.37 -0.0 2,302,297 - Psest_2154 0.37 -0.6 2,302,673 + Psest_2154 0.77 -0.9 2,302,673 + Psest_2154 0.77 -0.3 2,302,673 + Psest_2154 0.77 +0.2 2,302,748 + Psest_2154 0.84 -1.7 2,302,748 + Psest_2154 0.84 +0.7 2,302,749 - Psest_2154 0.85 -0.5 2,302,749 - Psest_2154 0.85 +0.7 2,302,749 - Psest_2154 0.85 +1.4 2,302,865 + -0.9 2,302,865 + -0.7 2,302,866 - +1.1 2,302,866 - -0.5 2,302,893 - -0.5
Or see this region's nucleotide sequence