Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2132 and Psest_2133 are separated by 8 nucleotides Psest_2133 and Psest_2134 are separated by 475 nucleotides
Psest_2132: Psest_2132 - Outer membrane protein, at 2,264,233 to 2,266,047
_2132
Psest_2133: Psest_2133 - Uncharacterized protein conserved in bacteria, at 2,266,056 to 2,269,724
_2133
Psest_2134: Psest_2134 - amino acid carrier protein, at 2,270,200 to 2,271,543
_2134
Position (kb)
2266
2267
2268
2269
2270 Strain fitness (log2 ratio)
-2
-1
0
1 at 2265.188 kb on + strand, within Psest_2132 at 2265.189 kb on - strand, within Psest_2132 at 2265.208 kb on + strand, within Psest_2132 at 2265.208 kb on + strand, within Psest_2132 at 2265.208 kb on + strand, within Psest_2132 at 2265.209 kb on - strand, within Psest_2132 at 2265.209 kb on - strand, within Psest_2132 at 2265.259 kb on + strand, within Psest_2132 at 2265.260 kb on - strand, within Psest_2132 at 2265.439 kb on + strand, within Psest_2132 at 2265.439 kb on + strand, within Psest_2132 at 2265.439 kb on + strand, within Psest_2132 at 2265.439 kb on + strand, within Psest_2132 at 2265.440 kb on - strand, within Psest_2132 at 2265.440 kb on - strand, within Psest_2132 at 2265.440 kb on - strand, within Psest_2132 at 2265.440 kb on - strand, within Psest_2132 at 2265.440 kb on - strand, within Psest_2132 at 2265.440 kb on - strand, within Psest_2132 at 2265.468 kb on + strand, within Psest_2132 at 2265.468 kb on + strand, within Psest_2132 at 2265.469 kb on - strand, within Psest_2132 at 2265.469 kb on - strand, within Psest_2132 at 2265.469 kb on - strand, within Psest_2132 at 2265.493 kb on + strand, within Psest_2132 at 2265.493 kb on + strand, within Psest_2132 at 2265.499 kb on + strand, within Psest_2132 at 2265.499 kb on + strand, within Psest_2132 at 2265.499 kb on + strand, within Psest_2132 at 2265.499 kb on + strand, within Psest_2132 at 2265.500 kb on - strand, within Psest_2132 at 2265.628 kb on - strand, within Psest_2132 at 2265.694 kb on + strand, within Psest_2132 at 2265.694 kb on + strand, within Psest_2132 at 2265.722 kb on - strand, within Psest_2132 at 2265.722 kb on - strand, within Psest_2132 at 2265.722 kb on - strand, within Psest_2132 at 2265.835 kb on + strand, within Psest_2132 at 2265.841 kb on + strand, within Psest_2132 at 2265.841 kb on + strand, within Psest_2132 at 2266.127 kb on + strand at 2266.128 kb on - strand at 2266.162 kb on + strand at 2266.426 kb on + strand, within Psest_2133 at 2266.426 kb on + strand, within Psest_2133 at 2266.427 kb on - strand, within Psest_2133 at 2266.520 kb on + strand, within Psest_2133 at 2266.522 kb on + strand, within Psest_2133 at 2266.522 kb on + strand, within Psest_2133 at 2266.522 kb on + strand, within Psest_2133 at 2266.522 kb on + strand, within Psest_2133 at 2266.522 kb on + strand, within Psest_2133 at 2266.522 kb on + strand, within Psest_2133 at 2266.522 kb on + strand, within Psest_2133 at 2266.522 kb on + strand, within Psest_2133 at 2266.522 kb on + strand, within Psest_2133 at 2266.522 kb on + strand, within Psest_2133 at 2266.522 kb on + strand, within Psest_2133 at 2266.522 kb on + strand, within Psest_2133 at 2266.523 kb on - strand, within Psest_2133 at 2266.523 kb on - strand, within Psest_2133 at 2266.523 kb on - strand, within Psest_2133 at 2266.523 kb on - strand, within Psest_2133 at 2266.523 kb on - strand, within Psest_2133 at 2266.717 kb on - strand, within Psest_2133 at 2266.953 kb on - strand, within Psest_2133 at 2267.008 kb on + strand, within Psest_2133 at 2267.009 kb on - strand, within Psest_2133 at 2267.095 kb on - strand, within Psest_2133 at 2267.095 kb on - strand, within Psest_2133 at 2267.167 kb on - strand, within Psest_2133 at 2267.167 kb on - strand, within Psest_2133 at 2267.167 kb on - strand, within Psest_2133 at 2267.167 kb on - strand, within Psest_2133 at 2267.167 kb on - strand, within Psest_2133 at 2267.167 kb on - strand, within Psest_2133 at 2267.174 kb on + strand, within Psest_2133 at 2267.621 kb on - strand, within Psest_2133 at 2267.837 kb on + strand, within Psest_2133 at 2267.837 kb on + strand, within Psest_2133 at 2267.837 kb on + strand, within Psest_2133 at 2267.837 kb on + strand, within Psest_2133 at 2268.483 kb on + strand, within Psest_2133 at 2268.483 kb on + strand, within Psest_2133 at 2268.809 kb on - strand, within Psest_2133 at 2268.843 kb on + strand, within Psest_2133 at 2269.380 kb on + strand at 2269.390 kb on + strand at 2269.626 kb on - strand at 2269.707 kb on + strand at 2269.768 kb on - strand at 2269.933 kb on - strand at 2269.976 kb on + strand at 2269.976 kb on + strand at 2269.977 kb on - strand at 2270.004 kb on + strand at 2270.005 kb on - strand at 2270.023 kb on - strand at 2270.060 kb on + strand at 2270.060 kb on + strand at 2270.060 kb on + strand at 2270.061 kb on - strand at 2270.179 kb on + strand at 2270.179 kb on + strand at 2270.179 kb on + strand at 2270.179 kb on + strand at 2270.179 kb on + strand at 2270.180 kb on - strand at 2270.180 kb on - strand at 2270.180 kb on - strand at 2270.180 kb on - strand at 2270.180 kb on - strand at 2270.180 kb on - strand at 2270.182 kb on - strand at 2270.188 kb on + strand at 2270.188 kb on + strand at 2270.188 kb on + strand at 2270.188 kb on + strand at 2270.188 kb on + strand at 2270.188 kb on + strand at 2270.188 kb on + strand at 2270.189 kb on - strand at 2270.189 kb on - strand at 2270.189 kb on - strand at 2270.189 kb on - strand at 2270.222 kb on + strand at 2270.226 kb on + strand at 2270.226 kb on + strand at 2270.361 kb on + strand, within Psest_2134 at 2270.361 kb on + strand, within Psest_2134 at 2270.362 kb on - strand, within Psest_2134 at 2270.362 kb on - strand, within Psest_2134 at 2270.362 kb on - strand, within Psest_2134 at 2270.362 kb on - strand, within Psest_2134 at 2270.362 kb on - strand, within Psest_2134 at 2270.362 kb on - strand, within Psest_2134 at 2270.532 kb on + strand, within Psest_2134 at 2270.532 kb on + strand, within Psest_2134 at 2270.532 kb on + strand, within Psest_2134 at 2270.532 kb on + strand, within Psest_2134 at 2270.533 kb on - strand, within Psest_2134 at 2270.536 kb on + strand, within Psest_2134 at 2270.536 kb on + strand, within Psest_2134 at 2270.536 kb on + strand, within Psest_2134 at 2270.536 kb on + strand, within Psest_2134 at 2270.536 kb on + strand, within Psest_2134 at 2270.536 kb on + strand, within Psest_2134 at 2270.536 kb on + strand, within Psest_2134 at 2270.537 kb on - strand, within Psest_2134 at 2270.537 kb on - strand, within Psest_2134 at 2270.608 kb on + strand, within Psest_2134 at 2270.608 kb on + strand, within Psest_2134 at 2270.608 kb on + strand, within Psest_2134 at 2270.608 kb on + strand, within Psest_2134 at 2270.608 kb on + strand, within Psest_2134 at 2270.608 kb on + strand, within Psest_2134 at 2270.608 kb on + strand, within Psest_2134 at 2270.608 kb on + strand, within Psest_2134 at 2270.608 kb on + strand, within Psest_2134 at 2270.609 kb on - strand, within Psest_2134 at 2270.609 kb on - strand, within Psest_2134 at 2270.609 kb on - strand, within Psest_2134 at 2270.609 kb on - strand, within Psest_2134 at 2270.609 kb on - strand, within Psest_2134 at 2270.609 kb on - strand, within Psest_2134 at 2270.609 kb on - strand, within Psest_2134 at 2270.609 kb on - strand, within Psest_2134 at 2270.609 kb on - strand, within Psest_2134 at 2270.609 kb on - strand, within Psest_2134 at 2270.609 kb on - strand, within Psest_2134
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,265,188 + Psest_2132 0.53 -0.3 2,265,189 - Psest_2132 0.53 -0.6 2,265,208 + Psest_2132 0.54 -1.7 2,265,208 + Psest_2132 0.54 -1.0 2,265,208 + Psest_2132 0.54 -1.5 2,265,209 - Psest_2132 0.54 -2.1 2,265,209 - Psest_2132 0.54 -0.1 2,265,259 + Psest_2132 0.57 -0.1 2,265,260 - Psest_2132 0.57 +0.3 2,265,439 + Psest_2132 0.66 -2.1 2,265,439 + Psest_2132 0.66 +0.4 2,265,439 + Psest_2132 0.66 -0.2 2,265,439 + Psest_2132 0.66 -1.2 2,265,440 - Psest_2132 0.67 -0.4 2,265,440 - Psest_2132 0.67 +0.9 2,265,440 - Psest_2132 0.67 -1.1 2,265,440 - Psest_2132 0.67 +1.1 2,265,440 - Psest_2132 0.67 +0.7 2,265,440 - Psest_2132 0.67 -0.1 2,265,468 + Psest_2132 0.68 -0.2 2,265,468 + Psest_2132 0.68 -0.8 2,265,469 - Psest_2132 0.68 -0.5 2,265,469 - Psest_2132 0.68 -0.8 2,265,469 - Psest_2132 0.68 -0.3 2,265,493 + Psest_2132 0.69 +0.2 2,265,493 + Psest_2132 0.69 -1.3 2,265,499 + Psest_2132 0.70 -1.5 2,265,499 + Psest_2132 0.70 -0.9 2,265,499 + Psest_2132 0.70 -0.8 2,265,499 + Psest_2132 0.70 -0.0 2,265,500 - Psest_2132 0.70 -0.4 2,265,628 - Psest_2132 0.77 -0.2 2,265,694 + Psest_2132 0.80 -0.6 2,265,694 + Psest_2132 0.80 -0.1 2,265,722 - Psest_2132 0.82 -0.7 2,265,722 - Psest_2132 0.82 -0.7 2,265,722 - Psest_2132 0.82 -1.4 2,265,835 + Psest_2132 0.88 -1.0 2,265,841 + Psest_2132 0.89 -0.9 2,265,841 + Psest_2132 0.89 -0.9 2,266,127 + -0.1 2,266,128 - +0.8 2,266,162 + -2.4 2,266,426 + Psest_2133 0.10 -0.6 2,266,426 + Psest_2133 0.10 -0.9 2,266,427 - Psest_2133 0.10 +0.2 2,266,520 + Psest_2133 0.13 -0.1 2,266,522 + Psest_2133 0.13 +0.1 2,266,522 + Psest_2133 0.13 -0.7 2,266,522 + Psest_2133 0.13 -0.2 2,266,522 + Psest_2133 0.13 -0.7 2,266,522 + Psest_2133 0.13 -1.2 2,266,522 + Psest_2133 0.13 -1.2 2,266,522 + Psest_2133 0.13 -0.6 2,266,522 + Psest_2133 0.13 -0.7 2,266,522 + Psest_2133 0.13 -1.2 2,266,522 + Psest_2133 0.13 -0.1 2,266,522 + Psest_2133 0.13 -0.7 2,266,522 + Psest_2133 0.13 -1.3 2,266,523 - Psest_2133 0.13 -0.0 2,266,523 - Psest_2133 0.13 -0.5 2,266,523 - Psest_2133 0.13 -0.6 2,266,523 - Psest_2133 0.13 -0.7 2,266,523 - Psest_2133 0.13 -1.0 2,266,717 - Psest_2133 0.18 -0.2 2,266,953 - Psest_2133 0.24 -0.8 2,267,008 + Psest_2133 0.26 -0.2 2,267,009 - Psest_2133 0.26 -0.6 2,267,095 - Psest_2133 0.28 -1.2 2,267,095 - Psest_2133 0.28 +0.1 2,267,167 - Psest_2133 0.30 +0.4 2,267,167 - Psest_2133 0.30 -0.4 2,267,167 - Psest_2133 0.30 -0.8 2,267,167 - Psest_2133 0.30 -0.0 2,267,167 - Psest_2133 0.30 -0.3 2,267,167 - Psest_2133 0.30 -0.9 2,267,174 + Psest_2133 0.30 +1.1 2,267,621 - Psest_2133 0.43 -0.1 2,267,837 + Psest_2133 0.49 -0.2 2,267,837 + Psest_2133 0.49 -0.2 2,267,837 + Psest_2133 0.49 -1.2 2,267,837 + Psest_2133 0.49 -0.5 2,268,483 + Psest_2133 0.66 +1.3 2,268,483 + Psest_2133 0.66 -1.4 2,268,809 - Psest_2133 0.75 -0.5 2,268,843 + Psest_2133 0.76 +0.5 2,269,380 + +0.1 2,269,390 + -2.4 2,269,626 - -1.2 2,269,707 + -0.2 2,269,768 - +0.3 2,269,933 - -0.4 2,269,976 + -0.1 2,269,976 + +0.1 2,269,977 - -1.2 2,270,004 + -1.6 2,270,005 - +0.3 2,270,023 - +0.2 2,270,060 + -1.6 2,270,060 + -0.3 2,270,060 + +0.9 2,270,061 - -0.2 2,270,179 + -0.9 2,270,179 + +0.1 2,270,179 + -1.6 2,270,179 + +0.1 2,270,179 + +0.1 2,270,180 - -0.6 2,270,180 - +0.3 2,270,180 - -0.9 2,270,180 - +0.2 2,270,180 - +0.1 2,270,180 - -1.5 2,270,182 - +0.6 2,270,188 + +0.1 2,270,188 + +0.2 2,270,188 + -0.0 2,270,188 + -0.4 2,270,188 + -0.5 2,270,188 + -0.9 2,270,188 + +0.6 2,270,189 - -0.2 2,270,189 - -0.8 2,270,189 - +0.3 2,270,189 - +0.1 2,270,222 + -0.4 2,270,226 + -0.1 2,270,226 + -0.4 2,270,361 + Psest_2134 0.12 -1.5 2,270,361 + Psest_2134 0.12 -0.5 2,270,362 - Psest_2134 0.12 -1.7 2,270,362 - Psest_2134 0.12 -0.9 2,270,362 - Psest_2134 0.12 -0.8 2,270,362 - Psest_2134 0.12 -0.3 2,270,362 - Psest_2134 0.12 -0.1 2,270,362 - Psest_2134 0.12 +0.0 2,270,532 + Psest_2134 0.25 -1.0 2,270,532 + Psest_2134 0.25 +0.0 2,270,532 + Psest_2134 0.25 -0.1 2,270,532 + Psest_2134 0.25 -0.1 2,270,533 - Psest_2134 0.25 +0.2 2,270,536 + Psest_2134 0.25 -0.2 2,270,536 + Psest_2134 0.25 -0.5 2,270,536 + Psest_2134 0.25 +0.4 2,270,536 + Psest_2134 0.25 -0.0 2,270,536 + Psest_2134 0.25 -0.5 2,270,536 + Psest_2134 0.25 +0.6 2,270,536 + Psest_2134 0.25 +0.0 2,270,537 - Psest_2134 0.25 -0.1 2,270,537 - Psest_2134 0.25 -0.5 2,270,608 + Psest_2134 0.30 +0.8 2,270,608 + Psest_2134 0.30 +0.1 2,270,608 + Psest_2134 0.30 -0.2 2,270,608 + Psest_2134 0.30 -0.7 2,270,608 + Psest_2134 0.30 -0.2 2,270,608 + Psest_2134 0.30 -0.3 2,270,608 + Psest_2134 0.30 +0.1 2,270,608 + Psest_2134 0.30 -0.2 2,270,608 + Psest_2134 0.30 -0.6 2,270,609 - Psest_2134 0.30 +0.1 2,270,609 - Psest_2134 0.30 -0.1 2,270,609 - Psest_2134 0.30 -0.6 2,270,609 - Psest_2134 0.30 +0.5 2,270,609 - Psest_2134 0.30 -0.7 2,270,609 - Psest_2134 0.30 -0.2 2,270,609 - Psest_2134 0.30 +0.3 2,270,609 - Psest_2134 0.30 +0.1 2,270,609 - Psest_2134 0.30 +0.1 2,270,609 - Psest_2134 0.30 -0.1 2,270,609 - Psest_2134 0.30 -0.7
Or see this region's nucleotide sequence