Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1917 and Psest_1918 overlap by 1 nucleotides Psest_1918 and Psest_1919 overlap by 4 nucleotides Psest_1919 and Psest_1920 are separated by 68 nucleotides
Psest_1917: Psest_1917 - Predicted sugar kinase, at 2,024,649 to 2,025,536
_1917
Psest_1918: Psest_1918 - Calcineurin-like phosphoesterase., at 2,025,536 to 2,026,507
_1918
Psest_1919: Psest_1919 - Uncharacterized membrane protein (homolog of Drosophila rhomboid), at 2,026,504 to 2,027,364
_1919
Psest_1920: Psest_1920 - Uncharacterized protein conserved in bacteria, at 2,027,433 to 2,027,711
_1920
Position (kb)
2025
2026
2027 Strain fitness (log2 ratio)
-2
-1
0
1 at 2025.758 kb on + strand, within Psest_1918 at 2025.758 kb on + strand, within Psest_1918 at 2025.758 kb on + strand, within Psest_1918 at 2025.800 kb on + strand, within Psest_1918 at 2025.800 kb on + strand, within Psest_1918 at 2025.800 kb on + strand, within Psest_1918 at 2025.800 kb on + strand, within Psest_1918 at 2025.936 kb on - strand, within Psest_1918 at 2026.123 kb on + strand, within Psest_1918 at 2026.217 kb on + strand, within Psest_1918 at 2026.217 kb on + strand, within Psest_1918 at 2026.217 kb on + strand, within Psest_1918 at 2026.217 kb on + strand, within Psest_1918 at 2026.218 kb on - strand, within Psest_1918 at 2026.397 kb on + strand, within Psest_1918 at 2026.625 kb on + strand, within Psest_1919 at 2026.879 kb on + strand, within Psest_1919 at 2027.083 kb on + strand, within Psest_1919 at 2027.157 kb on - strand, within Psest_1919 at 2027.186 kb on - strand, within Psest_1919 at 2027.479 kb on - strand, within Psest_1920
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,025,758 + Psest_1918 0.23 -0.0 2,025,758 + Psest_1918 0.23 -0.0 2,025,758 + Psest_1918 0.23 -0.9 2,025,800 + Psest_1918 0.27 -0.5 2,025,800 + Psest_1918 0.27 -0.7 2,025,800 + Psest_1918 0.27 -0.4 2,025,800 + Psest_1918 0.27 -1.0 2,025,936 - Psest_1918 0.41 +0.1 2,026,123 + Psest_1918 0.60 -2.2 2,026,217 + Psest_1918 0.70 +0.5 2,026,217 + Psest_1918 0.70 -1.3 2,026,217 + Psest_1918 0.70 -0.7 2,026,217 + Psest_1918 0.70 +0.3 2,026,218 - Psest_1918 0.70 -0.4 2,026,397 + Psest_1918 0.89 -1.2 2,026,625 + Psest_1919 0.14 -0.4 2,026,879 + Psest_1919 0.44 -0.5 2,027,083 + Psest_1919 0.67 -1.7 2,027,157 - Psest_1919 0.76 +1.1 2,027,186 - Psest_1919 0.79 -0.7 2,027,479 - Psest_1920 0.16 -0.1
Or see this region's nucleotide sequence