Strain Fitness in Marinobacter adhaerens HP15 around HP15_1723

Experiment: m.b. Cholin acetate 76.57 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1722 and HP15_1723 are separated by 148 nucleotidesHP15_1723 and HP15_1724 are separated by 172 nucleotidesHP15_1724 and HP15_1725 are separated by 40 nucleotides HP15_1722: HP15_1722 - methyl-accepting chemotaxis sensory transducer, at 1,820,028 to 1,821,914 _1722 HP15_1723: HP15_1723 - hydrolase, carbon-nitrogen family protein, at 1,822,063 to 1,823,583 _1723 HP15_1724: HP15_1724 - conserved hypothetical protein, at 1,823,756 to 1,824,154 _1724 HP15_1725: HP15_1725 - conserved hypothetical protein, at 1,824,195 to 1,824,863 _1725 Position (kb) 1822 1823 1824Strain fitness (log2 ratio) -1 0 1at 1821.066 kb on + strand, within HP15_1722at 1821.112 kb on + strand, within HP15_1722at 1821.239 kb on + strand, within HP15_1722at 1821.310 kb on - strand, within HP15_1722at 1821.313 kb on - strand, within HP15_1722at 1821.413 kb on - strand, within HP15_1722at 1821.414 kb on + strand, within HP15_1722at 1821.422 kb on - strand, within HP15_1722at 1821.693 kb on + strand, within HP15_1722at 1821.919 kb on - strandat 1822.090 kb on - strandat 1822.221 kb on - strand, within HP15_1723at 1822.317 kb on - strand, within HP15_1723at 1822.459 kb on - strand, within HP15_1723at 1822.459 kb on - strand, within HP15_1723at 1822.481 kb on + strand, within HP15_1723at 1822.645 kb on + strand, within HP15_1723at 1822.694 kb on - strand, within HP15_1723at 1822.899 kb on + strand, within HP15_1723at 1822.902 kb on - strand, within HP15_1723at 1823.002 kb on - strand, within HP15_1723at 1823.022 kb on + strand, within HP15_1723at 1823.085 kb on + strand, within HP15_1723at 1823.296 kb on + strand, within HP15_1723at 1823.304 kb on - strand, within HP15_1723at 1823.411 kb on - strand, within HP15_1723at 1823.510 kb on - strandat 1824.037 kb on + strand, within HP15_1724at 1824.435 kb on + strand, within HP15_1725at 1824.491 kb on + strand, within HP15_1725at 1824.547 kb on - strand, within HP15_1725

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM
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1,821,066 + HP15_1722 0.55 -0.2
1,821,112 + HP15_1722 0.57 +0.2
1,821,239 + HP15_1722 0.64 +0.2
1,821,310 - HP15_1722 0.68 +0.8
1,821,313 - HP15_1722 0.68 -0.5
1,821,413 - HP15_1722 0.73 +0.0
1,821,414 + HP15_1722 0.73 -0.0
1,821,422 - HP15_1722 0.74 +0.7
1,821,693 + HP15_1722 0.88 +0.0
1,821,919 - +0.0
1,822,090 - -0.5
1,822,221 - HP15_1723 0.10 -0.3
1,822,317 - HP15_1723 0.17 +0.4
1,822,459 - HP15_1723 0.26 -0.4
1,822,459 - HP15_1723 0.26 +0.3
1,822,481 + HP15_1723 0.27 -0.1
1,822,645 + HP15_1723 0.38 +1.1
1,822,694 - HP15_1723 0.41 +0.9
1,822,899 + HP15_1723 0.55 +0.2
1,822,902 - HP15_1723 0.55 +0.7
1,823,002 - HP15_1723 0.62 +0.4
1,823,022 + HP15_1723 0.63 +0.3
1,823,085 + HP15_1723 0.67 +1.1
1,823,296 + HP15_1723 0.81 -1.5
1,823,304 - HP15_1723 0.82 +1.3
1,823,411 - HP15_1723 0.89 +0.4
1,823,510 - +0.2
1,824,037 + HP15_1724 0.70 +0.9
1,824,435 + HP15_1725 0.36 +0.9
1,824,491 + HP15_1725 0.44 +1.5
1,824,547 - HP15_1725 0.53 +1.1

Or see this region's nucleotide sequence