Experiment: m.b. Cholin acetate 76.57 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1649 and HP15_1650 are separated by 115 nucleotides HP15_1650 and HP15_1651 are separated by 17 nucleotides
HP15_1649: HP15_1649 - transcriptional regulator, GntR family with aminotransferase domain protein, at 1,745,627 to 1,747,027
_1649
HP15_1650: HP15_1650 - iron-sulfur cluster-binding protein-like protein, at 1,747,143 to 1,747,439
_1650
HP15_1651: HP15_1651 - iron-sulfur cluster-binding protein, at 1,747,457 to 1,748,536
_1651
Position (kb)
1747
1748 Strain fitness (log2 ratio)
-1
0
1 at 1746.351 kb on - strand, within HP15_1649 at 1746.358 kb on + strand, within HP15_1649 at 1746.483 kb on - strand, within HP15_1649 at 1746.495 kb on + strand, within HP15_1649 at 1746.515 kb on - strand, within HP15_1649 at 1746.539 kb on - strand, within HP15_1649 at 1746.540 kb on + strand, within HP15_1649 at 1746.548 kb on - strand, within HP15_1649 at 1746.569 kb on + strand, within HP15_1649 at 1746.834 kb on + strand, within HP15_1649 at 1746.841 kb on + strand, within HP15_1649 at 1746.861 kb on + strand, within HP15_1649 at 1746.956 kb on - strand at 1747.134 kb on - strand at 1747.190 kb on - strand, within HP15_1650 at 1747.333 kb on - strand, within HP15_1650 at 1747.450 kb on - strand at 1747.450 kb on - strand at 1747.500 kb on - strand at 1747.546 kb on + strand at 1747.554 kb on - strand at 1747.573 kb on - strand, within HP15_1651 at 1747.608 kb on + strand, within HP15_1651 at 1747.638 kb on - strand, within HP15_1651 at 1747.664 kb on - strand, within HP15_1651 at 1747.695 kb on - strand, within HP15_1651 at 1747.899 kb on + strand, within HP15_1651 at 1747.993 kb on + strand, within HP15_1651 at 1748.015 kb on - strand, within HP15_1651 at 1748.061 kb on + strand, within HP15_1651 at 1748.069 kb on - strand, within HP15_1651 at 1748.199 kb on - strand, within HP15_1651 at 1748.384 kb on + strand, within HP15_1651
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM remove 1,746,351 - HP15_1649 0.52 -0.4 1,746,358 + HP15_1649 0.52 -0.2 1,746,483 - HP15_1649 0.61 -0.1 1,746,495 + HP15_1649 0.62 +0.8 1,746,515 - HP15_1649 0.63 -0.5 1,746,539 - HP15_1649 0.65 +0.5 1,746,540 + HP15_1649 0.65 -0.2 1,746,548 - HP15_1649 0.66 +0.7 1,746,569 + HP15_1649 0.67 -0.4 1,746,834 + HP15_1649 0.86 -0.5 1,746,841 + HP15_1649 0.87 +0.1 1,746,861 + HP15_1649 0.88 +0.7 1,746,956 - -0.8 1,747,134 - -0.3 1,747,190 - HP15_1650 0.16 -1.7 1,747,333 - HP15_1650 0.64 -0.2 1,747,450 - +0.7 1,747,450 - -0.3 1,747,500 - -0.3 1,747,546 + -0.4 1,747,554 - +0.4 1,747,573 - HP15_1651 0.11 +1.2 1,747,608 + HP15_1651 0.14 +0.2 1,747,638 - HP15_1651 0.17 +0.3 1,747,664 - HP15_1651 0.19 -0.1 1,747,695 - HP15_1651 0.22 +1.0 1,747,899 + HP15_1651 0.41 +0.4 1,747,993 + HP15_1651 0.50 +1.1 1,748,015 - HP15_1651 0.52 -0.3 1,748,061 + HP15_1651 0.56 -0.1 1,748,069 - HP15_1651 0.57 -0.5 1,748,199 - HP15_1651 0.69 -0.0 1,748,384 + HP15_1651 0.86 -1.0
Or see this region's nucleotide sequence