Strain Fitness in Marinobacter adhaerens HP15 around HP15_144

Experiment: m.b. Cholin acetate 76.57 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_141 and HP15_142 are separated by 166 nucleotidesHP15_142 and HP15_143 are separated by 41 nucleotidesHP15_143 and HP15_144 are separated by 12 nucleotidesHP15_144 and HP15_145 are separated by 3 nucleotidesHP15_145 and HP15_146 are separated by 143 nucleotidesHP15_146 and HP15_147 are separated by 219 nucleotides HP15_141: HP15_141 - transcriptional regulator, at 146,140 to 147,564 _141 HP15_142: HP15_142 - conserved hypothetical protein, membrane, at 147,731 to 148,288 _142 HP15_143: HP15_143 - hypothetical protein, at 148,330 to 148,533 _143 HP15_144: HP15_144 - conserved hypothetical protein, at 148,546 to 148,821 _144 HP15_145: HP15_145 - conserved hypothetical protein, membrane, at 148,825 to 149,127 _145 HP15_146: HP15_146 - hypothetical protein, at 149,271 to 149,468 _146 HP15_147: HP15_147 - conserved hypothetical protein, membrane, at 149,688 to 150,164 _147 Position (kb) 148 149Strain fitness (log2 ratio) -1 0 1at 147.630 kb on - strandat 147.747 kb on + strandat 147.755 kb on - strandat 147.779 kb on + strandat 147.792 kb on - strand, within HP15_142at 147.792 kb on - strand, within HP15_142at 147.792 kb on - strand, within HP15_142at 147.810 kb on - strand, within HP15_142at 147.994 kb on - strand, within HP15_142at 148.056 kb on + strand, within HP15_142at 148.078 kb on - strand, within HP15_142at 148.116 kb on - strand, within HP15_142at 148.172 kb on + strand, within HP15_142at 148.249 kb on + strandat 148.257 kb on - strandat 148.298 kb on - strandat 148.332 kb on + strandat 148.337 kb on + strandat 148.340 kb on - strandat 148.387 kb on - strand, within HP15_143at 148.390 kb on - strand, within HP15_143at 148.463 kb on - strand, within HP15_143at 148.484 kb on - strand, within HP15_143at 148.484 kb on - strand, within HP15_143at 148.484 kb on - strand, within HP15_143at 148.641 kb on + strand, within HP15_144at 148.697 kb on + strand, within HP15_144at 148.754 kb on - strand, within HP15_144at 149.084 kb on + strand, within HP15_145at 149.124 kb on - strandat 149.170 kb on + strandat 149.181 kb on + strandat 149.307 kb on - strand, within HP15_146at 149.328 kb on + strand, within HP15_146at 149.336 kb on - strand, within HP15_146at 149.375 kb on - strand, within HP15_146at 149.418 kb on + strand, within HP15_146at 149.428 kb on + strand, within HP15_146at 149.452 kb on + strandat 149.455 kb on - strandat 149.528 kb on + strandat 149.541 kb on - strandat 149.558 kb on + strandat 149.561 kb on - strandat 149.677 kb on - strandat 149.748 kb on + strand, within HP15_147at 149.772 kb on + strand, within HP15_147at 149.784 kb on + strand, within HP15_147at 149.792 kb on - strand, within HP15_147

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM
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147,630 - -0.4
147,747 + -0.2
147,755 - -0.1
147,779 + -0.1
147,792 - HP15_142 0.11 -0.1
147,792 - HP15_142 0.11 -0.1
147,792 - HP15_142 0.11 -0.3
147,810 - HP15_142 0.14 +0.1
147,994 - HP15_142 0.47 +0.2
148,056 + HP15_142 0.58 -0.0
148,078 - HP15_142 0.62 +0.7
148,116 - HP15_142 0.69 +0.5
148,172 + HP15_142 0.79 +0.6
148,249 + -0.3
148,257 - -0.9
148,298 - -0.2
148,332 + -0.5
148,337 + -0.1
148,340 - +0.1
148,387 - HP15_143 0.28 -0.2
148,390 - HP15_143 0.29 -0.1
148,463 - HP15_143 0.65 -0.2
148,484 - HP15_143 0.75 +0.3
148,484 - HP15_143 0.75 +1.3
148,484 - HP15_143 0.75 +0.4
148,641 + HP15_144 0.34 -1.4
148,697 + HP15_144 0.55 +0.1
148,754 - HP15_144 0.75 +0.5
149,084 + HP15_145 0.85 -0.7
149,124 - -0.1
149,170 + -0.5
149,181 + +0.5
149,307 - HP15_146 0.18 +0.3
149,328 + HP15_146 0.29 -0.4
149,336 - HP15_146 0.33 -0.4
149,375 - HP15_146 0.53 +0.4
149,418 + HP15_146 0.74 -0.2
149,428 + HP15_146 0.79 -0.6
149,452 + -0.3
149,455 - +0.2
149,528 + -0.4
149,541 - -0.3
149,558 + -0.3
149,561 - -0.2
149,677 - -1.2
149,748 + HP15_147 0.13 +0.1
149,772 + HP15_147 0.18 -0.2
149,784 + HP15_147 0.20 +0.9
149,792 - HP15_147 0.22 +0.5

Or see this region's nucleotide sequence