Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1388

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1386 and Psest_1387 are separated by 194 nucleotidesPsest_1387 and Psest_1388 are separated by 70 nucleotidesPsest_1388 and Psest_1389 are separated by 107 nucleotidesPsest_1389 and Psest_1390 are separated by 17 nucleotides Psest_1386: Psest_1386 - Na+/H+-dicarboxylate symporters, at 1,495,247 to 1,496,476 _1386 Psest_1387: Psest_1387 - Domain of unknown function (DUF1992)., at 1,496,671 to 1,496,994 _1387 Psest_1388: Psest_1388 - Uncharacterized protein conserved in bacteria, at 1,497,065 to 1,497,790 _1388 Psest_1389: Psest_1389 - hypothetical protein, at 1,497,898 to 1,498,506 _1389 Psest_1390: Psest_1390 - Uncharacterized ABC-type transport system, permease component, at 1,498,524 to 1,499,450 _1390 Position (kb) 1497 1498Strain fitness (log2 ratio) -1 0 1 2at 1496.223 kb on + strand, within Psest_1386at 1496.223 kb on + strand, within Psest_1386at 1496.223 kb on + strand, within Psest_1386at 1496.224 kb on - strand, within Psest_1386at 1496.224 kb on - strand, within Psest_1386at 1496.224 kb on - strand, within Psest_1386at 1496.224 kb on - strand, within Psest_1386at 1496.224 kb on - strand, within Psest_1386at 1496.367 kb on + strandat 1496.511 kb on - strandat 1496.564 kb on + strandat 1496.564 kb on + strandat 1496.565 kb on - strandat 1496.565 kb on - strandat 1496.653 kb on + strandat 1497.026 kb on + strandat 1497.026 kb on + strandat 1497.027 kb on - strandat 1497.027 kb on - strandat 1497.044 kb on + strandat 1497.045 kb on - strandat 1497.045 kb on - strandat 1497.050 kb on + strandat 1497.050 kb on + strandat 1497.050 kb on + strandat 1497.051 kb on - strandat 1497.051 kb on - strandat 1497.052 kb on + strandat 1497.369 kb on + strand, within Psest_1388at 1497.369 kb on + strand, within Psest_1388at 1497.722 kb on - strandat 1497.766 kb on + strandat 1497.766 kb on + strandat 1497.766 kb on + strandat 1497.766 kb on + strandat 1497.766 kb on + strandat 1497.767 kb on - strandat 1497.767 kb on - strandat 1497.767 kb on - strandat 1497.776 kb on + strandat 1497.965 kb on + strand, within Psest_1389at 1497.965 kb on + strand, within Psest_1389at 1498.139 kb on + strand, within Psest_1389at 1498.139 kb on + strand, within Psest_1389at 1498.140 kb on - strand, within Psest_1389at 1498.140 kb on - strand, within Psest_1389at 1498.140 kb on - strand, within Psest_1389at 1498.140 kb on - strand, within Psest_1389at 1498.284 kb on + strand, within Psest_1389at 1498.285 kb on - strand, within Psest_1389at 1498.308 kb on + strand, within Psest_1389at 1498.308 kb on + strand, within Psest_1389at 1498.308 kb on + strand, within Psest_1389at 1498.308 kb on + strand, within Psest_1389at 1498.308 kb on + strand, within Psest_1389at 1498.308 kb on + strand, within Psest_1389at 1498.309 kb on - strand, within Psest_1389at 1498.309 kb on - strand, within Psest_1389at 1498.568 kb on - strandat 1498.627 kb on + strand, within Psest_1390at 1498.714 kb on + strand, within Psest_1390

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,496,223 + Psest_1386 0.79 -0.3
1,496,223 + Psest_1386 0.79 +1.8
1,496,223 + Psest_1386 0.79 -0.4
1,496,224 - Psest_1386 0.79 -0.1
1,496,224 - Psest_1386 0.79 +0.3
1,496,224 - Psest_1386 0.79 +0.2
1,496,224 - Psest_1386 0.79 -0.4
1,496,224 - Psest_1386 0.79 -0.2
1,496,367 + -0.2
1,496,511 - +0.2
1,496,564 + +1.2
1,496,564 + -1.1
1,496,565 - +0.5
1,496,565 - +0.6
1,496,653 + +0.7
1,497,026 + -0.3
1,497,026 + +0.0
1,497,027 - +0.4
1,497,027 - +0.0
1,497,044 + -0.1
1,497,045 - -0.9
1,497,045 - -0.1
1,497,050 + -0.2
1,497,050 + +0.7
1,497,050 + +0.1
1,497,051 - +0.0
1,497,051 - +1.8
1,497,052 + +0.4
1,497,369 + Psest_1388 0.42 -0.3
1,497,369 + Psest_1388 0.42 -0.6
1,497,722 - +0.9
1,497,766 + +0.2
1,497,766 + +0.1
1,497,766 + +1.2
1,497,766 + +1.8
1,497,766 + +1.0
1,497,767 - +1.2
1,497,767 - -0.6
1,497,767 - -0.2
1,497,776 + -0.1
1,497,965 + Psest_1389 0.11 -0.7
1,497,965 + Psest_1389 0.11 +1.0
1,498,139 + Psest_1389 0.40 +0.4
1,498,139 + Psest_1389 0.40 +0.1
1,498,140 - Psest_1389 0.40 +0.2
1,498,140 - Psest_1389 0.40 +0.8
1,498,140 - Psest_1389 0.40 -0.4
1,498,140 - Psest_1389 0.40 -0.0
1,498,284 + Psest_1389 0.63 -0.7
1,498,285 - Psest_1389 0.64 +0.4
1,498,308 + Psest_1389 0.67 -1.1
1,498,308 + Psest_1389 0.67 +0.2
1,498,308 + Psest_1389 0.67 +0.1
1,498,308 + Psest_1389 0.67 +0.3
1,498,308 + Psest_1389 0.67 -1.1
1,498,308 + Psest_1389 0.67 +0.2
1,498,309 - Psest_1389 0.67 -0.4
1,498,309 - Psest_1389 0.67 +0.6
1,498,568 - -1.2
1,498,627 + Psest_1390 0.11 +0.3
1,498,714 + Psest_1390 0.20 +0.7

Or see this region's nucleotide sequence