Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1284

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1282 and Psest_1283 are separated by 23 nucleotidesPsest_1283 and Psest_1284 are separated by 103 nucleotidesPsest_1284 and Psest_1285 are separated by 128 nucleotidesPsest_1285 and Psest_1286 are separated by 126 nucleotides Psest_1282: Psest_1282 - Amidases related to nicotinamidase, at 1,386,753 to 1,387,295 _1282 Psest_1283: Psest_1283 - Membrane proteins related to metalloendopeptidases, at 1,387,319 to 1,388,143 _1283 Psest_1284: Psest_1284 - exodeoxyribonuclease VII, large subunit, at 1,388,247 to 1,389,623 _1284 Psest_1285: Psest_1285 - hypothetical protein, at 1,389,752 to 1,390,303 _1285 Psest_1286: Psest_1286 - inosine-5'-monophosphate dehydrogenase, at 1,390,430 to 1,391,899 _1286 Position (kb) 1388 1389 1390Strain fitness (log2 ratio) -2 -1 0 1 2at 1387.330 kb on - strandat 1387.330 kb on - strandat 1387.548 kb on + strand, within Psest_1283at 1387.548 kb on + strand, within Psest_1283at 1387.548 kb on + strand, within Psest_1283at 1387.549 kb on - strand, within Psest_1283at 1387.549 kb on - strand, within Psest_1283at 1387.549 kb on - strand, within Psest_1283at 1387.549 kb on - strand, within Psest_1283at 1387.549 kb on - strand, within Psest_1283at 1387.563 kb on - strand, within Psest_1283at 1387.746 kb on + strand, within Psest_1283at 1388.059 kb on + strand, within Psest_1283at 1388.249 kb on - strandat 1388.457 kb on + strand, within Psest_1284at 1388.458 kb on - strand, within Psest_1284at 1388.458 kb on - strand, within Psest_1284at 1389.033 kb on + strand, within Psest_1284at 1389.322 kb on + strand, within Psest_1284at 1389.323 kb on - strand, within Psest_1284at 1389.463 kb on + strand, within Psest_1284at 1389.463 kb on + strand, within Psest_1284at 1389.463 kb on + strand, within Psest_1284at 1389.463 kb on + strand, within Psest_1284at 1389.464 kb on - strand, within Psest_1284at 1389.464 kb on - strand, within Psest_1284at 1389.464 kb on - strand, within Psest_1284at 1389.464 kb on - strand, within Psest_1284at 1389.464 kb on - strand, within Psest_1284at 1389.464 kb on - strand, within Psest_1284at 1389.464 kb on - strand, within Psest_1284at 1389.636 kb on - strandat 1389.636 kb on - strandat 1389.752 kb on - strandat 1389.760 kb on + strandat 1389.760 kb on + strandat 1390.004 kb on + strand, within Psest_1285at 1390.004 kb on + strand, within Psest_1285at 1390.004 kb on + strand, within Psest_1285at 1390.004 kb on + strand, within Psest_1285at 1390.004 kb on + strand, within Psest_1285at 1390.004 kb on + strand, within Psest_1285at 1390.004 kb on + strand, within Psest_1285at 1390.004 kb on + strand, within Psest_1285at 1390.004 kb on + strand, within Psest_1285at 1390.004 kb on + strand, within Psest_1285at 1390.004 kb on + strand, within Psest_1285at 1390.005 kb on - strand, within Psest_1285at 1390.005 kb on - strand, within Psest_1285at 1390.005 kb on - strand, within Psest_1285at 1390.005 kb on - strand, within Psest_1285at 1390.005 kb on - strand, within Psest_1285at 1390.005 kb on - strand, within Psest_1285at 1390.005 kb on - strand, within Psest_1285at 1390.005 kb on - strand, within Psest_1285at 1390.005 kb on - strandat 1390.005 kb on - strand, within Psest_1285at 1390.005 kb on - strand, within Psest_1285at 1390.006 kb on + strand, within Psest_1285at 1390.007 kb on - strand, within Psest_1285at 1390.335 kb on + strandat 1390.336 kb on - strandat 1390.351 kb on - strandat 1390.351 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,387,330 - -0.1
1,387,330 - -2.4
1,387,548 + Psest_1283 0.28 +0.4
1,387,548 + Psest_1283 0.28 -2.0
1,387,548 + Psest_1283 0.28 +1.9
1,387,549 - Psest_1283 0.28 +0.5
1,387,549 - Psest_1283 0.28 +0.2
1,387,549 - Psest_1283 0.28 -0.5
1,387,549 - Psest_1283 0.28 -0.4
1,387,549 - Psest_1283 0.28 -0.4
1,387,563 - Psest_1283 0.30 +2.2
1,387,746 + Psest_1283 0.52 -1.1
1,388,059 + Psest_1283 0.90 +0.2
1,388,249 - -0.8
1,388,457 + Psest_1284 0.15 -1.0
1,388,458 - Psest_1284 0.15 -1.0
1,388,458 - Psest_1284 0.15 -0.5
1,389,033 + Psest_1284 0.57 +0.0
1,389,322 + Psest_1284 0.78 -0.8
1,389,323 - Psest_1284 0.78 +0.2
1,389,463 + Psest_1284 0.88 -0.1
1,389,463 + Psest_1284 0.88 -0.5
1,389,463 + Psest_1284 0.88 +0.4
1,389,463 + Psest_1284 0.88 -1.2
1,389,464 - Psest_1284 0.88 -0.8
1,389,464 - Psest_1284 0.88 -0.4
1,389,464 - Psest_1284 0.88 +1.2
1,389,464 - Psest_1284 0.88 -1.8
1,389,464 - Psest_1284 0.88 -1.5
1,389,464 - Psest_1284 0.88 -0.6
1,389,464 - Psest_1284 0.88 -0.4
1,389,636 - +0.5
1,389,636 - +1.2
1,389,752 - -0.4
1,389,760 + -0.5
1,389,760 + -1.1
1,390,004 + Psest_1285 0.46 +0.1
1,390,004 + Psest_1285 0.46 -0.8
1,390,004 + Psest_1285 0.46 -0.0
1,390,004 + Psest_1285 0.46 -0.3
1,390,004 + Psest_1285 0.46 +1.6
1,390,004 + Psest_1285 0.46 -0.2
1,390,004 + Psest_1285 0.46 -2.5
1,390,004 + Psest_1285 0.46 +0.7
1,390,004 + Psest_1285 0.46 -0.8
1,390,004 + Psest_1285 0.46 +0.1
1,390,004 + Psest_1285 0.46 -0.2
1,390,005 - Psest_1285 0.46 -0.7
1,390,005 - Psest_1285 0.46 -1.0
1,390,005 - Psest_1285 0.46 -0.0
1,390,005 - Psest_1285 0.46 +0.6
1,390,005 - Psest_1285 0.46 -0.7
1,390,005 - Psest_1285 0.46 -0.4
1,390,005 - Psest_1285 0.46 +2.2
1,390,005 - Psest_1285 0.46 +0.0
1,390,005 - +0.2
1,390,005 - Psest_1285 0.46 +0.2
1,390,005 - Psest_1285 0.46 +0.8
1,390,006 + Psest_1285 0.46 -0.5
1,390,007 - Psest_1285 0.46 +0.0
1,390,335 + -0.8
1,390,336 - +0.9
1,390,351 - -0.4
1,390,351 - +0.4

Or see this region's nucleotide sequence