Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1282 and Psest_1283 are separated by 23 nucleotides Psest_1283 and Psest_1284 are separated by 103 nucleotides Psest_1284 and Psest_1285 are separated by 128 nucleotides Psest_1285 and Psest_1286 are separated by 126 nucleotides
Psest_1282: Psest_1282 - Amidases related to nicotinamidase, at 1,386,753 to 1,387,295
_1282
Psest_1283: Psest_1283 - Membrane proteins related to metalloendopeptidases, at 1,387,319 to 1,388,143
_1283
Psest_1284: Psest_1284 - exodeoxyribonuclease VII, large subunit, at 1,388,247 to 1,389,623
_1284
Psest_1285: Psest_1285 - hypothetical protein, at 1,389,752 to 1,390,303
_1285
Psest_1286: Psest_1286 - inosine-5'-monophosphate dehydrogenase, at 1,390,430 to 1,391,899
_1286
Position (kb)
1388
1389
1390 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1387.330 kb on - strand at 1387.330 kb on - strand at 1387.548 kb on + strand, within Psest_1283 at 1387.548 kb on + strand, within Psest_1283 at 1387.548 kb on + strand, within Psest_1283 at 1387.549 kb on - strand, within Psest_1283 at 1387.549 kb on - strand, within Psest_1283 at 1387.549 kb on - strand, within Psest_1283 at 1387.549 kb on - strand, within Psest_1283 at 1387.549 kb on - strand, within Psest_1283 at 1387.563 kb on - strand, within Psest_1283 at 1387.746 kb on + strand, within Psest_1283 at 1388.059 kb on + strand, within Psest_1283 at 1388.249 kb on - strand at 1388.457 kb on + strand, within Psest_1284 at 1388.458 kb on - strand, within Psest_1284 at 1388.458 kb on - strand, within Psest_1284 at 1389.033 kb on + strand, within Psest_1284 at 1389.322 kb on + strand, within Psest_1284 at 1389.323 kb on - strand, within Psest_1284 at 1389.463 kb on + strand, within Psest_1284 at 1389.463 kb on + strand, within Psest_1284 at 1389.463 kb on + strand, within Psest_1284 at 1389.463 kb on + strand, within Psest_1284 at 1389.464 kb on - strand, within Psest_1284 at 1389.464 kb on - strand, within Psest_1284 at 1389.464 kb on - strand, within Psest_1284 at 1389.464 kb on - strand, within Psest_1284 at 1389.464 kb on - strand, within Psest_1284 at 1389.464 kb on - strand, within Psest_1284 at 1389.464 kb on - strand, within Psest_1284 at 1389.636 kb on - strand at 1389.636 kb on - strand at 1389.752 kb on - strand at 1389.760 kb on + strand at 1389.760 kb on + strand at 1390.004 kb on + strand, within Psest_1285 at 1390.004 kb on + strand, within Psest_1285 at 1390.004 kb on + strand, within Psest_1285 at 1390.004 kb on + strand, within Psest_1285 at 1390.004 kb on + strand, within Psest_1285 at 1390.004 kb on + strand, within Psest_1285 at 1390.004 kb on + strand, within Psest_1285 at 1390.004 kb on + strand, within Psest_1285 at 1390.004 kb on + strand, within Psest_1285 at 1390.004 kb on + strand, within Psest_1285 at 1390.004 kb on + strand, within Psest_1285 at 1390.005 kb on - strand, within Psest_1285 at 1390.005 kb on - strand, within Psest_1285 at 1390.005 kb on - strand, within Psest_1285 at 1390.005 kb on - strand, within Psest_1285 at 1390.005 kb on - strand, within Psest_1285 at 1390.005 kb on - strand, within Psest_1285 at 1390.005 kb on - strand, within Psest_1285 at 1390.005 kb on - strand, within Psest_1285 at 1390.005 kb on - strand at 1390.005 kb on - strand, within Psest_1285 at 1390.005 kb on - strand, within Psest_1285 at 1390.006 kb on + strand, within Psest_1285 at 1390.007 kb on - strand, within Psest_1285 at 1390.335 kb on + strand at 1390.336 kb on - strand at 1390.351 kb on - strand at 1390.351 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,387,330 - -0.1 1,387,330 - -2.4 1,387,548 + Psest_1283 0.28 +0.4 1,387,548 + Psest_1283 0.28 -2.0 1,387,548 + Psest_1283 0.28 +1.9 1,387,549 - Psest_1283 0.28 +0.5 1,387,549 - Psest_1283 0.28 +0.2 1,387,549 - Psest_1283 0.28 -0.5 1,387,549 - Psest_1283 0.28 -0.4 1,387,549 - Psest_1283 0.28 -0.4 1,387,563 - Psest_1283 0.30 +2.2 1,387,746 + Psest_1283 0.52 -1.1 1,388,059 + Psest_1283 0.90 +0.2 1,388,249 - -0.8 1,388,457 + Psest_1284 0.15 -1.0 1,388,458 - Psest_1284 0.15 -1.0 1,388,458 - Psest_1284 0.15 -0.5 1,389,033 + Psest_1284 0.57 +0.0 1,389,322 + Psest_1284 0.78 -0.8 1,389,323 - Psest_1284 0.78 +0.2 1,389,463 + Psest_1284 0.88 -0.1 1,389,463 + Psest_1284 0.88 -0.5 1,389,463 + Psest_1284 0.88 +0.4 1,389,463 + Psest_1284 0.88 -1.2 1,389,464 - Psest_1284 0.88 -0.8 1,389,464 - Psest_1284 0.88 -0.4 1,389,464 - Psest_1284 0.88 +1.2 1,389,464 - Psest_1284 0.88 -1.8 1,389,464 - Psest_1284 0.88 -1.5 1,389,464 - Psest_1284 0.88 -0.6 1,389,464 - Psest_1284 0.88 -0.4 1,389,636 - +0.5 1,389,636 - +1.2 1,389,752 - -0.4 1,389,760 + -0.5 1,389,760 + -1.1 1,390,004 + Psest_1285 0.46 +0.1 1,390,004 + Psest_1285 0.46 -0.8 1,390,004 + Psest_1285 0.46 -0.0 1,390,004 + Psest_1285 0.46 -0.3 1,390,004 + Psest_1285 0.46 +1.6 1,390,004 + Psest_1285 0.46 -0.2 1,390,004 + Psest_1285 0.46 -2.5 1,390,004 + Psest_1285 0.46 +0.7 1,390,004 + Psest_1285 0.46 -0.8 1,390,004 + Psest_1285 0.46 +0.1 1,390,004 + Psest_1285 0.46 -0.2 1,390,005 - Psest_1285 0.46 -0.7 1,390,005 - Psest_1285 0.46 -1.0 1,390,005 - Psest_1285 0.46 -0.0 1,390,005 - Psest_1285 0.46 +0.6 1,390,005 - Psest_1285 0.46 -0.7 1,390,005 - Psest_1285 0.46 -0.4 1,390,005 - Psest_1285 0.46 +2.2 1,390,005 - Psest_1285 0.46 +0.0 1,390,005 - +0.2 1,390,005 - Psest_1285 0.46 +0.2 1,390,005 - Psest_1285 0.46 +0.8 1,390,006 + Psest_1285 0.46 -0.5 1,390,007 - Psest_1285 0.46 +0.0 1,390,335 + -0.8 1,390,336 - +0.9 1,390,351 - -0.4 1,390,351 - +0.4
Or see this region's nucleotide sequence