Strain Fitness in Marinobacter adhaerens HP15 around HP15_1215

Experiment: m.b. Cholin acetate 76.57 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1214 and HP15_1215 are separated by 74 nucleotidesHP15_1215 and HP15_1216 are separated by 74 nucleotides HP15_1214: HP15_1214 - methyl-accepting chemotaxis sensory transducer, at 1,262,449 to 1,264,695 _1214 HP15_1215: HP15_1215 - ribonuclease T, at 1,264,770 to 1,265,396 _1215 HP15_1216: HP15_1216 - dihydroorotase, homodimeric type, at 1,265,471 to 1,266,502 _1216 Position (kb) 1264 1265 1266Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1263.848 kb on - strand, within HP15_1214at 1263.901 kb on - strand, within HP15_1214at 1263.925 kb on + strand, within HP15_1214at 1264.275 kb on - strand, within HP15_1214at 1264.315 kb on + strand, within HP15_1214at 1264.323 kb on - strand, within HP15_1214at 1264.323 kb on - strand, within HP15_1214at 1264.419 kb on + strand, within HP15_1214at 1264.419 kb on + strand, within HP15_1214at 1264.419 kb on + strand, within HP15_1214at 1264.612 kb on + strandat 1264.620 kb on - strandat 1264.645 kb on + strandat 1264.789 kb on - strandat 1265.332 kb on + strand, within HP15_1215at 1265.850 kb on + strand, within HP15_1216at 1266.258 kb on + strand, within HP15_1216

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM
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1,263,848 - HP15_1214 0.62 -0.1
1,263,901 - HP15_1214 0.65 -0.1
1,263,925 + HP15_1214 0.66 +0.3
1,264,275 - HP15_1214 0.81 -0.3
1,264,315 + HP15_1214 0.83 +0.0
1,264,323 - HP15_1214 0.83 +0.1
1,264,323 - HP15_1214 0.83 +0.1
1,264,419 + HP15_1214 0.88 -2.4
1,264,419 + HP15_1214 0.88 +0.1
1,264,419 + HP15_1214 0.88 -0.4
1,264,612 + +0.6
1,264,620 - +1.5
1,264,645 + -1.7
1,264,789 - +1.4
1,265,332 + HP15_1215 0.90 -2.6
1,265,850 + HP15_1216 0.37 -4.1
1,266,258 + HP15_1216 0.76 +0.3

Or see this region's nucleotide sequence