Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1224 and Psest_1225 overlap by 1 nucleotides Psest_1225 and Psest_1226 are separated by 337 nucleotides Psest_1226 and Psest_1227 are separated by 27 nucleotides Psest_1227 and Psest_1228 are separated by 69 nucleotides
Psest_1224: Psest_1224 - Arabinose efflux permease, at 1,331,458 to 1,332,669
_1224
Psest_1225: Psest_1225 - hypothetical protein, at 1,332,669 to 1,332,788
_1225
Psest_1226: Psest_1226 - hypothetical protein, at 1,333,126 to 1,333,317
_1226
Psest_1227: Psest_1227 - Predicted SAM-dependent methyltransferase, at 1,333,345 to 1,334,337
_1227
Psest_1228: Psest_1228 - Arabinose efflux permease, at 1,334,407 to 1,335,576
_1228
Position (kb)
1333
1334
1335 Strain fitness (log2 ratio)
-1
0
1 at 1332.374 kb on - strand, within Psest_1224 at 1332.412 kb on - strand, within Psest_1224 at 1332.542 kb on - strand, within Psest_1224 at 1332.555 kb on + strand at 1332.559 kb on + strand at 1332.560 kb on - strand at 1332.963 kb on - strand at 1333.050 kb on + strand at 1333.088 kb on + strand at 1333.088 kb on + strand at 1333.093 kb on - strand at 1333.093 kb on - strand at 1333.168 kb on + strand, within Psest_1226 at 1333.190 kb on + strand, within Psest_1226 at 1333.264 kb on + strand, within Psest_1226 at 1333.265 kb on - strand, within Psest_1226 at 1333.266 kb on + strand, within Psest_1226 at 1333.267 kb on - strand, within Psest_1226 at 1333.452 kb on + strand, within Psest_1227 at 1333.452 kb on + strand, within Psest_1227 at 1333.452 kb on + strand, within Psest_1227 at 1333.453 kb on - strand, within Psest_1227 at 1334.042 kb on + strand, within Psest_1227 at 1334.076 kb on - strand, within Psest_1227 at 1334.076 kb on - strand, within Psest_1227 at 1334.512 kb on - strand at 1334.549 kb on + strand, within Psest_1228 at 1334.729 kb on + strand, within Psest_1228 at 1334.729 kb on + strand, within Psest_1228 at 1334.729 kb on + strand, within Psest_1228 at 1334.730 kb on - strand, within Psest_1228 at 1334.730 kb on - strand, within Psest_1228 at 1334.730 kb on - strand, within Psest_1228 at 1334.826 kb on + strand, within Psest_1228 at 1334.826 kb on + strand, within Psest_1228 at 1334.827 kb on - strand, within Psest_1228 at 1334.900 kb on + strand, within Psest_1228 at 1334.900 kb on + strand, within Psest_1228 at 1334.900 kb on + strand, within Psest_1228 at 1334.901 kb on - strand, within Psest_1228 at 1334.901 kb on - strand, within Psest_1228 at 1334.901 kb on - strand, within Psest_1228 at 1334.901 kb on - strand, within Psest_1228 at 1335.098 kb on + strand, within Psest_1228 at 1335.099 kb on - strand, within Psest_1228 at 1335.158 kb on + strand, within Psest_1228 at 1335.158 kb on + strand, within Psest_1228 at 1335.159 kb on - strand, within Psest_1228
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,332,374 - Psest_1224 0.76 -0.7 1,332,412 - Psest_1224 0.79 +0.8 1,332,542 - Psest_1224 0.89 -0.1 1,332,555 + -0.5 1,332,559 + +0.3 1,332,560 - +1.3 1,332,963 - -0.0 1,333,050 + -0.2 1,333,088 + -1.0 1,333,088 + -0.7 1,333,093 - +0.0 1,333,093 - +0.3 1,333,168 + Psest_1226 0.22 +0.2 1,333,190 + Psest_1226 0.33 +0.2 1,333,264 + Psest_1226 0.72 +0.5 1,333,265 - Psest_1226 0.72 -0.2 1,333,266 + Psest_1226 0.73 -0.0 1,333,267 - Psest_1226 0.73 +0.9 1,333,452 + Psest_1227 0.11 -0.8 1,333,452 + Psest_1227 0.11 -1.4 1,333,452 + Psest_1227 0.11 +0.9 1,333,453 - Psest_1227 0.11 -0.0 1,334,042 + Psest_1227 0.70 -1.0 1,334,076 - Psest_1227 0.74 -0.2 1,334,076 - Psest_1227 0.74 -1.3 1,334,512 - +1.2 1,334,549 + Psest_1228 0.12 -0.3 1,334,729 + Psest_1228 0.28 +0.2 1,334,729 + Psest_1228 0.28 -0.3 1,334,729 + Psest_1228 0.28 +0.9 1,334,730 - Psest_1228 0.28 +1.7 1,334,730 - Psest_1228 0.28 -1.5 1,334,730 - Psest_1228 0.28 -1.0 1,334,826 + Psest_1228 0.36 +0.4 1,334,826 + Psest_1228 0.36 +0.2 1,334,827 - Psest_1228 0.36 +0.5 1,334,900 + Psest_1228 0.42 +0.3 1,334,900 + Psest_1228 0.42 +0.4 1,334,900 + Psest_1228 0.42 +0.1 1,334,901 - Psest_1228 0.42 +0.5 1,334,901 - Psest_1228 0.42 +1.1 1,334,901 - Psest_1228 0.42 +1.2 1,334,901 - Psest_1228 0.42 -0.1 1,335,098 + Psest_1228 0.59 -0.6 1,335,099 - Psest_1228 0.59 -0.4 1,335,158 + Psest_1228 0.64 +0.8 1,335,158 + Psest_1228 0.64 -0.1 1,335,159 - Psest_1228 0.64 -0.1
Or see this region's nucleotide sequence