Experiment: m.b. Cholin acetate 76.57 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1160 and HP15_1161 are separated by 87 nucleotides HP15_1161 and HP15_1162 overlap by 4 nucleotides HP15_1162 and HP15_1163 overlap by 4 nucleotides
HP15_1160: HP15_1160 - tetrahydrodipicolinate succinylase, at 1,192,625 to 1,193,653
_1160
HP15_1161: HP15_1161 - arsenate reductase, at 1,193,741 to 1,194,082
_1161
HP15_1162: HP15_1162 - aminotransferase, class I and II, at 1,194,079 to 1,195,281
_1162
HP15_1163: HP15_1163 - [protein-PII] uridylyltransferase, at 1,195,278 to 1,197,923
_1163
Position (kb)
1194
1195
1196 Strain fitness (log2 ratio)
-2
-1
0
1 at 1193.767 kb on - strand at 1193.856 kb on - strand, within HP15_1161 at 1193.893 kb on - strand, within HP15_1161 at 1193.920 kb on + strand, within HP15_1161 at 1193.972 kb on + strand, within HP15_1161 at 1194.237 kb on + strand, within HP15_1162 at 1194.582 kb on - strand, within HP15_1162 at 1194.636 kb on + strand, within HP15_1162 at 1194.858 kb on - strand, within HP15_1162 at 1194.930 kb on + strand, within HP15_1162 at 1194.957 kb on - strand, within HP15_1162 at 1195.087 kb on - strand, within HP15_1162 at 1195.700 kb on + strand, within HP15_1163 at 1195.708 kb on - strand, within HP15_1163 at 1195.715 kb on + strand, within HP15_1163 at 1195.802 kb on - strand, within HP15_1163 at 1196.067 kb on + strand, within HP15_1163 at 1196.075 kb on + strand, within HP15_1163 at 1196.086 kb on + strand, within HP15_1163 at 1196.120 kb on - strand, within HP15_1163 at 1196.157 kb on - strand, within HP15_1163 at 1196.279 kb on + strand, within HP15_1163
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM remove 1,193,767 - +0.1 1,193,856 - HP15_1161 0.34 -0.1 1,193,893 - HP15_1161 0.44 +0.7 1,193,920 + HP15_1161 0.52 -0.5 1,193,972 + HP15_1161 0.68 -0.2 1,194,237 + HP15_1162 0.13 -0.7 1,194,582 - HP15_1162 0.42 -0.8 1,194,636 + HP15_1162 0.46 -0.5 1,194,858 - HP15_1162 0.65 +0.4 1,194,930 + HP15_1162 0.71 -0.3 1,194,957 - HP15_1162 0.73 -1.0 1,195,087 - HP15_1162 0.84 -0.3 1,195,700 + HP15_1163 0.16 -2.0 1,195,708 - HP15_1163 0.16 -0.5 1,195,715 + HP15_1163 0.17 -0.5 1,195,802 - HP15_1163 0.20 -1.4 1,196,067 + HP15_1163 0.30 -2.0 1,196,075 + HP15_1163 0.30 -0.5 1,196,086 + HP15_1163 0.31 -0.6 1,196,120 - HP15_1163 0.32 -0.3 1,196,157 - HP15_1163 0.33 -0.6 1,196,279 + HP15_1163 0.38 -1.6
Or see this region's nucleotide sequence