Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1109 and Psest_1110 are separated by 0 nucleotides Psest_1110 and Psest_1111 are separated by 3 nucleotides Psest_1111 and Psest_1112 are separated by 197 nucleotides
Psest_1109: Psest_1109 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, at 1,203,140 to 1,204,000
_1109
Psest_1110: Psest_1110 - outer membrane lipoprotein LolB, at 1,204,001 to 1,204,621
_1110
Psest_1111: Psest_1111 - Flp pilus assembly protein TadD, contains TPR repeats, at 1,204,625 to 1,206,352
_1111
Psest_1112: Psest_1112 - glutamyl-tRNA reductase, at 1,206,550 to 1,207,818
_1112
Position (kb)
1204
1205
1206
1207 Strain fitness (log2 ratio)
-1
0
1 at 1204.689 kb on - strand at 1204.689 kb on - strand at 1204.770 kb on - strand at 1204.770 kb on - strand at 1204.808 kb on + strand, within Psest_1111 at 1204.896 kb on + strand, within Psest_1111 at 1204.896 kb on + strand, within Psest_1111 at 1204.896 kb on + strand, within Psest_1111 at 1205.070 kb on + strand, within Psest_1111 at 1205.071 kb on - strand, within Psest_1111 at 1205.071 kb on - strand, within Psest_1111 at 1205.176 kb on - strand, within Psest_1111 at 1205.380 kb on - strand, within Psest_1111 at 1205.425 kb on - strand, within Psest_1111 at 1205.575 kb on - strand, within Psest_1111 at 1205.667 kb on - strand, within Psest_1111 at 1206.363 kb on + strand at 1206.510 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,204,689 - +0.4 1,204,689 - -0.6 1,204,770 - -0.2 1,204,770 - -0.5 1,204,808 + Psest_1111 0.11 +0.0 1,204,896 + Psest_1111 0.16 -0.3 1,204,896 + Psest_1111 0.16 -1.4 1,204,896 + Psest_1111 0.16 -1.0 1,205,070 + Psest_1111 0.26 -0.6 1,205,071 - Psest_1111 0.26 -0.6 1,205,071 - Psest_1111 0.26 -1.5 1,205,176 - Psest_1111 0.32 +0.2 1,205,380 - Psest_1111 0.44 +0.1 1,205,425 - Psest_1111 0.46 +0.6 1,205,575 - Psest_1111 0.55 +0.7 1,205,667 - Psest_1111 0.60 +0.8 1,206,363 + +0.4 1,206,510 + -1.6
Or see this region's nucleotide sequence