Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_957 and HP15_958 are separated by 26 nucleotides HP15_958 and HP15_959 are separated by 97 nucleotides HP15_959 and HP15_960 are separated by 459 nucleotides
HP15_957: HP15_957 - GDSL-like lipase/acylhydrolase domain protein, at 973,318 to 974,031
_957
HP15_958: HP15_958 - small multidrug resistance protein, at 974,058 to 974,390
_958
HP15_959: HP15_959 - conserved hypothetical protein, at 974,488 to 975,513
_959
HP15_960: HP15_960 - conserved hypothetical protein, at 975,973 to 976,455
_960
Position (kb) 974
975
976 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 973.543 kb on - strand, within HP15_957 at 973.603 kb on + strand, within HP15_957 at 973.613 kb on + strand, within HP15_957 at 973.676 kb on - strand, within HP15_957 at 973.777 kb on + strand, within HP15_957 at 973.785 kb on - strand, within HP15_957 at 973.785 kb on - strand, within HP15_957 at 973.785 kb on - strand, within HP15_957 at 973.826 kb on + strand, within HP15_957 at 973.846 kb on + strand, within HP15_957 at 973.882 kb on - strand, within HP15_957 at 973.950 kb on + strand, within HP15_957 at 973.977 kb on + strand at 973.996 kb on + strand at 973.996 kb on + strand at 974.001 kb on + strand at 974.004 kb on - strand at 974.093 kb on + strand, within HP15_958 at 974.117 kb on - strand, within HP15_958 at 974.139 kb on + strand, within HP15_958 at 974.214 kb on + strand, within HP15_958 at 974.222 kb on - strand, within HP15_958 at 974.291 kb on + strand, within HP15_958 at 974.315 kb on - strand, within HP15_958 at 974.430 kb on - strand at 974.448 kb on - strand at 974.485 kb on + strand at 974.485 kb on + strand at 974.493 kb on - strand at 974.503 kb on - strand at 974.559 kb on - strand at 974.605 kb on + strand, within HP15_959 at 974.659 kb on - strand, within HP15_959 at 974.689 kb on - strand, within HP15_959 at 974.744 kb on + strand, within HP15_959 at 974.751 kb on + strand, within HP15_959 at 974.834 kb on + strand, within HP15_959 at 974.837 kb on - strand, within HP15_959 at 975.006 kb on + strand, within HP15_959 at 975.012 kb on + strand, within HP15_959 at 975.016 kb on + strand, within HP15_959 at 975.140 kb on - strand, within HP15_959 at 975.301 kb on + strand, within HP15_959 at 975.310 kb on - strand, within HP15_959 at 975.588 kb on - strand at 975.607 kb on - strand at 975.622 kb on + strand at 975.622 kb on + strand at 975.655 kb on + strand at 975.769 kb on + strand at 975.795 kb on - strand at 975.798 kb on + strand at 975.798 kb on + strand at 975.798 kb on + strand at 975.798 kb on + strand at 975.806 kb on - strand at 975.822 kb on + strand at 975.979 kb on + strand at 975.980 kb on + strand at 975.980 kb on + strand at 975.988 kb on - strand at 976.014 kb on + strand at 976.017 kb on - strand at 976.070 kb on + strand, within HP15_960 at 976.124 kb on + strand, within HP15_960 at 976.130 kb on - strand, within HP15_960 at 976.207 kb on + strand, within HP15_960 at 976.233 kb on + strand, within HP15_960 at 976.328 kb on - strand, within HP15_960 at 976.450 kb on + strand at 976.505 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 973,543 - HP15_957 0.32 +0.8 973,603 + HP15_957 0.40 -1.1 973,613 + HP15_957 0.41 -2.3 973,676 - HP15_957 0.50 +0.6 973,777 + HP15_957 0.64 -2.6 973,785 - HP15_957 0.65 +0.7 973,785 - HP15_957 0.65 +0.8 973,785 - HP15_957 0.65 +0.3 973,826 + HP15_957 0.71 -1.9 973,846 + HP15_957 0.74 -2.0 973,882 - HP15_957 0.79 +0.0 973,950 + HP15_957 0.89 -2.4 973,977 + -0.7 973,996 + -2.0 973,996 + -2.4 974,001 + -1.6 974,004 - -1.3 974,093 + HP15_958 0.11 -3.4 974,117 - HP15_958 0.18 -3.7 974,139 + HP15_958 0.24 -2.6 974,214 + HP15_958 0.47 -3.2 974,222 - HP15_958 0.49 -2.2 974,291 + HP15_958 0.70 -3.3 974,315 - HP15_958 0.77 -4.7 974,430 - -2.3 974,448 - +2.4 974,485 + +1.9 974,485 + +1.2 974,493 - +2.8 974,503 - +2.8 974,559 - +3.3 974,605 + HP15_959 0.11 +1.0 974,659 - HP15_959 0.17 +0.7 974,689 - HP15_959 0.20 +0.6 974,744 + HP15_959 0.25 -1.7 974,751 + HP15_959 0.26 +1.1 974,834 + HP15_959 0.34 -0.7 974,837 - HP15_959 0.34 +0.0 975,006 + HP15_959 0.50 +0.8 975,012 + HP15_959 0.51 +0.5 975,016 + HP15_959 0.51 +0.4 975,140 - HP15_959 0.64 -1.8 975,301 + HP15_959 0.79 +1.0 975,310 - HP15_959 0.80 +0.9 975,588 - +0.5 975,607 - +2.2 975,622 + +0.5 975,622 + +0.3 975,655 + +1.0 975,769 + +0.9 975,795 - -0.9 975,798 + -0.9 975,798 + +1.1 975,798 + +0.5 975,798 + +0.4 975,806 - +0.3 975,822 + +0.4 975,979 + +0.5 975,980 + +0.7 975,980 + +0.3 975,988 - +1.0 976,014 + +0.4 976,017 - -1.2 976,070 + HP15_960 0.20 -0.8 976,124 + HP15_960 0.31 -0.1 976,130 - HP15_960 0.33 +0.5 976,207 + HP15_960 0.48 +1.6 976,233 + HP15_960 0.54 +1.1 976,328 - HP15_960 0.73 -0.7 976,450 + +0.2 976,505 + -0.5
Or see this region's nucleotide sequence