Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_943 and HP15_944 are separated by 238 nucleotides HP15_944 and HP15_945 are separated by 345 nucleotides
HP15_943: HP15_943 - aldehyde dehydrogenase family protein, at 958,470 to 959,987
_943
HP15_944: HP15_944 - FAD dependent oxidoreductase, at 960,226 to 961,452
_944
HP15_945: HP15_945 - protein containing immunoglobulin I-set domain, at 961,798 to 963,255
_945
Position (kb) 960
961
962 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 959.261 kb on - strand, within HP15_943 at 959.341 kb on + strand, within HP15_943 at 959.349 kb on - strand, within HP15_943 at 959.360 kb on + strand, within HP15_943 at 959.483 kb on + strand, within HP15_943 at 959.496 kb on - strand, within HP15_943 at 959.499 kb on - strand, within HP15_943 at 959.567 kb on + strand, within HP15_943 at 959.642 kb on + strand, within HP15_943 at 959.691 kb on - strand, within HP15_943 at 959.721 kb on - strand, within HP15_943 at 959.738 kb on + strand, within HP15_943 at 959.799 kb on - strand, within HP15_943 at 959.968 kb on - strand at 960.002 kb on + strand at 960.002 kb on + strand at 960.094 kb on + strand at 960.094 kb on + strand at 960.094 kb on + strand at 960.102 kb on - strand at 960.102 kb on - strand at 960.102 kb on - strand at 960.245 kb on + strand at 960.246 kb on + strand at 960.288 kb on - strand at 960.309 kb on - strand at 960.365 kb on - strand, within HP15_944 at 960.420 kb on - strand, within HP15_944 at 960.422 kb on + strand, within HP15_944 at 960.430 kb on - strand, within HP15_944 at 960.493 kb on + strand, within HP15_944 at 960.512 kb on - strand, within HP15_944 at 960.566 kb on - strand, within HP15_944 at 960.571 kb on - strand, within HP15_944 at 960.571 kb on - strand, within HP15_944 at 960.625 kb on - strand, within HP15_944 at 960.713 kb on + strand, within HP15_944 at 960.810 kb on + strand, within HP15_944 at 960.833 kb on - strand, within HP15_944 at 961.077 kb on + strand, within HP15_944 at 961.085 kb on - strand, within HP15_944 at 961.254 kb on + strand, within HP15_944 at 961.273 kb on - strand, within HP15_944 at 961.334 kb on + strand at 961.635 kb on - strand at 961.637 kb on - strand at 961.637 kb on - strand at 961.637 kb on - strand at 961.894 kb on - strand at 961.900 kb on + strand at 961.908 kb on - strand at 961.908 kb on - strand at 962.006 kb on - strand, within HP15_945 at 962.050 kb on - strand, within HP15_945 at 962.072 kb on + strand, within HP15_945 at 962.080 kb on - strand, within HP15_945 at 962.110 kb on + strand, within HP15_945 at 962.139 kb on + strand, within HP15_945 at 962.240 kb on + strand, within HP15_945 at 962.240 kb on + strand, within HP15_945 at 962.241 kb on + strand, within HP15_945 at 962.293 kb on - strand, within HP15_945 at 962.386 kb on - strand, within HP15_945 at 962.396 kb on - strand, within HP15_945
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 959,261 - HP15_943 0.52 -0.5 959,341 + HP15_943 0.57 +0.0 959,349 - HP15_943 0.58 +0.6 959,360 + HP15_943 0.59 +1.3 959,483 + HP15_943 0.67 -0.1 959,496 - HP15_943 0.68 -1.5 959,499 - HP15_943 0.68 +0.6 959,567 + HP15_943 0.72 -1.8 959,642 + HP15_943 0.77 -0.6 959,691 - HP15_943 0.80 +0.4 959,721 - HP15_943 0.82 +0.2 959,738 + HP15_943 0.84 +0.1 959,799 - HP15_943 0.88 +0.0 959,968 - +0.8 960,002 + +0.5 960,002 + -0.8 960,094 + +1.5 960,094 + -0.3 960,094 + +0.3 960,102 - +1.1 960,102 - +0.4 960,102 - -0.1 960,245 + +0.6 960,246 + +2.1 960,288 - +1.1 960,309 - +0.2 960,365 - HP15_944 0.11 +0.7 960,420 - HP15_944 0.16 +1.8 960,422 + HP15_944 0.16 +0.8 960,430 - HP15_944 0.17 +0.9 960,493 + HP15_944 0.22 +1.0 960,512 - HP15_944 0.23 -1.1 960,566 - HP15_944 0.28 +0.8 960,571 - HP15_944 0.28 +0.5 960,571 - HP15_944 0.28 +0.5 960,625 - HP15_944 0.33 +1.2 960,713 + HP15_944 0.40 +0.4 960,810 + HP15_944 0.48 -1.2 960,833 - HP15_944 0.49 +0.8 961,077 + HP15_944 0.69 -1.8 961,085 - HP15_944 0.70 +0.9 961,254 + HP15_944 0.84 -1.5 961,273 - HP15_944 0.85 +0.3 961,334 + +0.5 961,635 - +0.6 961,637 - +1.1 961,637 - +0.2 961,637 - -0.6 961,894 - +0.6 961,900 + -0.6 961,908 - +0.7 961,908 - +0.4 962,006 - HP15_945 0.14 +1.0 962,050 - HP15_945 0.17 +0.5 962,072 + HP15_945 0.19 +0.5 962,080 - HP15_945 0.19 +1.5 962,110 + HP15_945 0.21 +0.6 962,139 + HP15_945 0.23 -0.5 962,240 + HP15_945 0.30 -0.3 962,240 + HP15_945 0.30 -3.0 962,241 + HP15_945 0.30 +0.2 962,293 - HP15_945 0.34 -0.1 962,386 - HP15_945 0.40 +0.6 962,396 - HP15_945 0.41 +1.0
Or see this region's nucleotide sequence