Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_942 and HP15_943 are separated by 75 nucleotides HP15_943 and HP15_944 are separated by 238 nucleotides
HP15_942: HP15_942 - glutamate-putrescine ligase, at 957,030 to 958,394
_942
HP15_943: HP15_943 - aldehyde dehydrogenase family protein, at 958,470 to 959,987
_943
HP15_944: HP15_944 - FAD dependent oxidoreductase, at 960,226 to 961,452
_944
Position (kb) 958
959
960 Strain fitness (log2 ratio) -2
-1
0
1
2 at 957.548 kb on + strand, within HP15_942 at 957.607 kb on + strand, within HP15_942 at 957.683 kb on - strand, within HP15_942 at 957.750 kb on + strand, within HP15_942 at 957.813 kb on + strand, within HP15_942 at 957.843 kb on + strand, within HP15_942 at 957.881 kb on + strand, within HP15_942 at 957.950 kb on - strand, within HP15_942 at 958.165 kb on + strand, within HP15_942 at 958.173 kb on - strand, within HP15_942 at 958.173 kb on - strand, within HP15_942 at 958.184 kb on - strand, within HP15_942 at 958.221 kb on - strand, within HP15_942 at 958.462 kb on + strand at 958.462 kb on + strand at 958.551 kb on - strand at 958.634 kb on - strand, within HP15_943 at 958.796 kb on - strand, within HP15_943 at 958.807 kb on + strand, within HP15_943 at 959.070 kb on + strand, within HP15_943 at 959.208 kb on - strand, within HP15_943 at 959.261 kb on - strand, within HP15_943 at 959.341 kb on + strand, within HP15_943 at 959.349 kb on - strand, within HP15_943 at 959.360 kb on + strand, within HP15_943 at 959.483 kb on + strand, within HP15_943 at 959.496 kb on - strand, within HP15_943 at 959.499 kb on - strand, within HP15_943 at 959.567 kb on + strand, within HP15_943 at 959.642 kb on + strand, within HP15_943 at 959.691 kb on - strand, within HP15_943 at 959.721 kb on - strand, within HP15_943 at 959.738 kb on + strand, within HP15_943 at 959.799 kb on - strand, within HP15_943 at 959.968 kb on - strand at 960.002 kb on + strand at 960.002 kb on + strand at 960.094 kb on + strand at 960.094 kb on + strand at 960.094 kb on + strand at 960.102 kb on - strand at 960.102 kb on - strand at 960.102 kb on - strand at 960.245 kb on + strand at 960.246 kb on + strand at 960.288 kb on - strand at 960.309 kb on - strand at 960.365 kb on - strand, within HP15_944 at 960.420 kb on - strand, within HP15_944 at 960.422 kb on + strand, within HP15_944 at 960.430 kb on - strand, within HP15_944 at 960.493 kb on + strand, within HP15_944 at 960.512 kb on - strand, within HP15_944 at 960.566 kb on - strand, within HP15_944 at 960.571 kb on - strand, within HP15_944 at 960.571 kb on - strand, within HP15_944 at 960.625 kb on - strand, within HP15_944 at 960.713 kb on + strand, within HP15_944 at 960.810 kb on + strand, within HP15_944 at 960.833 kb on - strand, within HP15_944
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 957,548 + HP15_942 0.38 +0.1 957,607 + HP15_942 0.42 +0.9 957,683 - HP15_942 0.48 +0.8 957,750 + HP15_942 0.53 -0.4 957,813 + HP15_942 0.57 -0.9 957,843 + HP15_942 0.60 +0.5 957,881 + HP15_942 0.62 +0.5 957,950 - HP15_942 0.67 +0.5 958,165 + HP15_942 0.83 +0.9 958,173 - HP15_942 0.84 -0.4 958,173 - HP15_942 0.84 +0.0 958,184 - HP15_942 0.85 -0.6 958,221 - HP15_942 0.87 -1.3 958,462 + -0.3 958,462 + -0.5 958,551 - +0.8 958,634 - HP15_943 0.11 +0.3 958,796 - HP15_943 0.21 +1.9 958,807 + HP15_943 0.22 +0.2 959,070 + HP15_943 0.40 +0.3 959,208 - HP15_943 0.49 +0.0 959,261 - HP15_943 0.52 -0.5 959,341 + HP15_943 0.57 +0.0 959,349 - HP15_943 0.58 +0.6 959,360 + HP15_943 0.59 +1.3 959,483 + HP15_943 0.67 -0.1 959,496 - HP15_943 0.68 -1.5 959,499 - HP15_943 0.68 +0.6 959,567 + HP15_943 0.72 -1.8 959,642 + HP15_943 0.77 -0.6 959,691 - HP15_943 0.80 +0.4 959,721 - HP15_943 0.82 +0.2 959,738 + HP15_943 0.84 +0.1 959,799 - HP15_943 0.88 +0.0 959,968 - +0.8 960,002 + +0.5 960,002 + -0.8 960,094 + +1.5 960,094 + -0.3 960,094 + +0.3 960,102 - +1.1 960,102 - +0.4 960,102 - -0.1 960,245 + +0.6 960,246 + +2.1 960,288 - +1.1 960,309 - +0.2 960,365 - HP15_944 0.11 +0.7 960,420 - HP15_944 0.16 +1.8 960,422 + HP15_944 0.16 +0.8 960,430 - HP15_944 0.17 +0.9 960,493 + HP15_944 0.22 +1.0 960,512 - HP15_944 0.23 -1.1 960,566 - HP15_944 0.28 +0.8 960,571 - HP15_944 0.28 +0.5 960,571 - HP15_944 0.28 +0.5 960,625 - HP15_944 0.33 +1.2 960,713 + HP15_944 0.40 +0.4 960,810 + HP15_944 0.48 -1.2 960,833 - HP15_944 0.49 +0.8
Or see this region's nucleotide sequence