Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_777 and HP15_778 overlap by 4 nucleotides HP15_778 and HP15_779 are separated by 134 nucleotides HP15_779 and HP15_780 are separated by 102 nucleotides
HP15_777: HP15_777 - sigma E regulatory protein, MucB/RseB, at 786,938 to 787,912
_777
HP15_778: HP15_778 - positive regulator of sigma E, RseC/MucC, at 787,909 to 788,358
_778
HP15_779: HP15_779 - serine protease MucD precursor, at 788,493 to 789,917
_779
HP15_780: HP15_780 - sensory box/GGDEF family protein, at 790,020 to 792,770
_780
Position (kb) 788
789
790 Strain fitness (log2 ratio) -1
0
1
2 at 788.426 kb on - strand at 788.430 kb on + strand at 788.430 kb on + strand at 788.762 kb on + strand, within HP15_779 at 788.877 kb on - strand, within HP15_779 at 789.062 kb on + strand, within HP15_779 at 789.342 kb on - strand, within HP15_779 at 789.391 kb on - strand, within HP15_779 at 789.914 kb on + strand at 789.969 kb on - strand at 790.060 kb on + strand at 790.146 kb on - strand at 790.257 kb on + strand at 790.445 kb on + strand, within HP15_780 at 790.466 kb on + strand, within HP15_780 at 790.506 kb on - strand, within HP15_780 at 790.591 kb on - strand, within HP15_780 at 790.668 kb on - strand, within HP15_780 at 790.670 kb on + strand, within HP15_780 at 790.670 kb on + strand, within HP15_780 at 790.848 kb on + strand, within HP15_780
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 788,426 - +0.5 788,430 + +1.0 788,430 + +0.1 788,762 + HP15_779 0.19 +0.7 788,877 - HP15_779 0.27 +1.0 789,062 + HP15_779 0.40 +1.2 789,342 - HP15_779 0.60 +1.9 789,391 - HP15_779 0.63 +1.9 789,914 + -0.0 789,969 - +0.2 790,060 + +0.2 790,146 - +0.7 790,257 + +0.5 790,445 + HP15_780 0.15 +0.6 790,466 + HP15_780 0.16 -0.9 790,506 - HP15_780 0.18 +0.4 790,591 - HP15_780 0.21 +0.5 790,668 - HP15_780 0.24 -0.3 790,670 + HP15_780 0.24 +0.0 790,670 + HP15_780 0.24 -0.4 790,848 + HP15_780 0.30 -1.7
Or see this region's nucleotide sequence