Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_618 and HP15_619 are separated by 82 nucleotides HP15_619 and HP15_620 are separated by 115 nucleotides
HP15_618: HP15_618 - acyl-CoA dehydrogenase domain protein, at 640,556 to 641,737
_618
HP15_619: HP15_619 - protein belonging to uncharacterized protein family UPF0061, at 641,820 to 643,562
_619
HP15_620: HP15_620 - conserved hypothetical protein, secreted, at 643,678 to 645,561
_620
Position (kb) 641
642
643
644 Strain fitness (log2 ratio) -2
-1
0
1
2 at 640.826 kb on + strand, within HP15_618 at 640.850 kb on + strand, within HP15_618 at 640.858 kb on - strand, within HP15_618 at 640.865 kb on - strand, within HP15_618 at 640.941 kb on - strand, within HP15_618 at 640.997 kb on + strand, within HP15_618 at 641.107 kb on + strand, within HP15_618 at 641.130 kb on + strand, within HP15_618 at 641.266 kb on - strand, within HP15_618 at 641.288 kb on + strand, within HP15_618 at 641.376 kb on + strand, within HP15_618 at 641.393 kb on - strand, within HP15_618 at 641.516 kb on - strand, within HP15_618 at 641.584 kb on - strand, within HP15_618 at 641.614 kb on - strand, within HP15_618 at 641.656 kb on + strand at 641.664 kb on - strand at 641.667 kb on + strand at 641.667 kb on + strand at 641.764 kb on + strand at 641.777 kb on - strand at 641.777 kb on - strand at 641.782 kb on - strand at 641.987 kb on + strand at 642.000 kb on - strand, within HP15_619 at 642.010 kb on + strand, within HP15_619 at 642.075 kb on - strand, within HP15_619 at 642.110 kb on + strand, within HP15_619 at 642.248 kb on + strand, within HP15_619 at 642.285 kb on - strand, within HP15_619 at 642.418 kb on + strand, within HP15_619 at 642.669 kb on - strand, within HP15_619 at 642.871 kb on - strand, within HP15_619 at 642.872 kb on - strand, within HP15_619 at 642.879 kb on + strand, within HP15_619 at 642.879 kb on + strand, within HP15_619 at 642.967 kb on - strand, within HP15_619 at 643.051 kb on - strand, within HP15_619 at 643.115 kb on - strand, within HP15_619 at 643.122 kb on - strand, within HP15_619 at 643.217 kb on + strand, within HP15_619 at 643.317 kb on - strand, within HP15_619 at 643.317 kb on - strand, within HP15_619 at 643.457 kb on + strand at 643.480 kb on + strand at 643.488 kb on - strand at 643.488 kb on - strand at 643.488 kb on - strand at 643.518 kb on - strand at 643.526 kb on - strand at 643.631 kb on + strand at 643.631 kb on + strand at 643.631 kb on + strand at 643.639 kb on - strand at 643.789 kb on - strand at 643.793 kb on - strand at 643.831 kb on + strand at 643.856 kb on - strand at 643.903 kb on + strand, within HP15_620 at 643.924 kb on - strand, within HP15_620 at 643.924 kb on - strand, within HP15_620 at 643.928 kb on + strand, within HP15_620 at 643.936 kb on - strand, within HP15_620 at 643.939 kb on + strand, within HP15_620 at 643.940 kb on - strand, within HP15_620 at 644.017 kb on - strand, within HP15_620 at 644.054 kb on + strand, within HP15_620 at 644.329 kb on + strand, within HP15_620 at 644.337 kb on - strand, within HP15_620 at 644.338 kb on - strand, within HP15_620 at 644.373 kb on - strand, within HP15_620 at 644.400 kb on - strand, within HP15_620 at 644.453 kb on + strand, within HP15_620 at 644.461 kb on - strand, within HP15_620 at 644.463 kb on + strand, within HP15_620 at 644.471 kb on - strand, within HP15_620 at 644.508 kb on + strand, within HP15_620 at 644.510 kb on + strand, within HP15_620 at 644.510 kb on + strand, within HP15_620 at 644.546 kb on + strand, within HP15_620
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 640,826 + HP15_618 0.23 +0.1 640,850 + HP15_618 0.25 +0.3 640,858 - HP15_618 0.26 +0.8 640,865 - HP15_618 0.26 +0.4 640,941 - HP15_618 0.33 +0.4 640,997 + HP15_618 0.37 +0.4 641,107 + HP15_618 0.47 +1.3 641,130 + HP15_618 0.49 +0.0 641,266 - HP15_618 0.60 +0.4 641,288 + HP15_618 0.62 +1.4 641,376 + HP15_618 0.69 +0.5 641,393 - HP15_618 0.71 -0.7 641,516 - HP15_618 0.81 +0.2 641,584 - HP15_618 0.87 -1.5 641,614 - HP15_618 0.90 +0.7 641,656 + +0.5 641,664 - +0.1 641,667 + -0.4 641,667 + +0.9 641,764 + -1.8 641,777 - +0.3 641,777 - -2.1 641,782 - -0.9 641,987 + -0.9 642,000 - HP15_619 0.10 -2.6 642,010 + HP15_619 0.11 -0.1 642,075 - HP15_619 0.15 -0.7 642,110 + HP15_619 0.17 +1.0 642,248 + HP15_619 0.25 +1.0 642,285 - HP15_619 0.27 -0.7 642,418 + HP15_619 0.34 +0.6 642,669 - HP15_619 0.49 +2.7 642,871 - HP15_619 0.60 +0.6 642,872 - HP15_619 0.60 +0.6 642,879 + HP15_619 0.61 +0.4 642,879 + HP15_619 0.61 +0.9 642,967 - HP15_619 0.66 +0.6 643,051 - HP15_619 0.71 +2.4 643,115 - HP15_619 0.74 +0.3 643,122 - HP15_619 0.75 -2.1 643,217 + HP15_619 0.80 +0.3 643,317 - HP15_619 0.86 -0.3 643,317 - HP15_619 0.86 -0.4 643,457 + +1.9 643,480 + -0.5 643,488 - -1.2 643,488 - -0.7 643,488 - -0.8 643,518 - +1.1 643,526 - -1.6 643,631 + +0.9 643,631 + +1.2 643,631 + -1.0 643,639 - +0.5 643,789 - +0.2 643,793 - -1.7 643,831 + +0.3 643,856 - +0.2 643,903 + HP15_620 0.12 -0.0 643,924 - HP15_620 0.13 -0.3 643,924 - HP15_620 0.13 +0.6 643,928 + HP15_620 0.13 +0.1 643,936 - HP15_620 0.14 +1.1 643,939 + HP15_620 0.14 +0.2 643,940 - HP15_620 0.14 -1.2 644,017 - HP15_620 0.18 -0.1 644,054 + HP15_620 0.20 +1.0 644,329 + HP15_620 0.35 -1.8 644,337 - HP15_620 0.35 -1.2 644,338 - HP15_620 0.35 -0.2 644,373 - HP15_620 0.37 -0.5 644,400 - HP15_620 0.38 -0.1 644,453 + HP15_620 0.41 +0.3 644,461 - HP15_620 0.42 +0.5 644,463 + HP15_620 0.42 -1.1 644,471 - HP15_620 0.42 -0.8 644,508 + HP15_620 0.44 +0.1 644,510 + HP15_620 0.44 -1.0 644,510 + HP15_620 0.44 -0.4 644,546 + HP15_620 0.46 -0.9
Or see this region's nucleotide sequence