Strain Fitness in Marinobacter adhaerens HP15 around HP15_63

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_61 and HP15_62 are separated by 41 nucleotidesHP15_62 and HP15_63 are separated by 63 nucleotidesHP15_63 and HP15_64 are separated by 17 nucleotides HP15_61: HP15_61 - chain A, alpha-keto acid dehydrogenase-like protein, at 65,530 to 66,759 _61 HP15_62: HP15_62 - hypothetical protein, at 66,801 to 66,905 _62 HP15_63: HP15_63 - 2-oxoisovalerate dehydrogenase, E1 component, beta subunit, at 66,969 to 67,775 _63 HP15_64: HP15_64 - catalytic domain of components of various dehydrogenase complexes, at 67,793 to 69,091 _64 Position (kb) 66 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 66.025 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.161 kb on - strand, within HP15_61at 66.192 kb on - strand, within HP15_61at 66.199 kb on + strand, within HP15_61at 66.224 kb on - strand, within HP15_61at 66.225 kb on - strand, within HP15_61at 66.230 kb on + strand, within HP15_61at 66.283 kb on - strand, within HP15_61at 66.447 kb on + strand, within HP15_61at 66.472 kb on + strand, within HP15_61at 66.489 kb on + strand, within HP15_61at 66.489 kb on + strand, within HP15_61at 66.489 kb on + strand, within HP15_61at 66.497 kb on - strand, within HP15_61at 66.497 kb on - strand, within HP15_61at 66.514 kb on - strand, within HP15_61at 66.520 kb on + strand, within HP15_61at 66.521 kb on - strand, within HP15_61at 66.561 kb on - strand, within HP15_61at 66.563 kb on + strand, within HP15_61at 66.563 kb on + strand, within HP15_61at 66.620 kb on - strand, within HP15_61at 66.642 kb on + strandat 66.659 kb on + strandat 66.677 kb on - strandat 66.736 kb on - strandat 66.788 kb on + strandat 66.799 kb on - strandat 66.839 kb on - strand, within HP15_62at 66.844 kb on + strand, within HP15_62at 66.919 kb on + strandat 66.927 kb on - strandat 66.958 kb on - strandat 66.984 kb on - strandat 66.984 kb on - strandat 67.022 kb on - strandat 67.022 kb on - strandat 67.137 kb on + strand, within HP15_63at 67.186 kb on - strand, within HP15_63at 67.441 kb on + strand, within HP15_63at 67.441 kb on - strand, within HP15_63at 67.559 kb on - strand, within HP15_63at 67.570 kb on + strand, within HP15_63at 67.580 kb on + strand, within HP15_63at 67.604 kb on + strand, within HP15_63at 67.612 kb on - strand, within HP15_63at 67.612 kb on - strand, within HP15_63at 67.617 kb on - strand, within HP15_63at 67.689 kb on + strand, within HP15_63at 67.692 kb on - strand, within HP15_63at 67.882 kb on + strandat 67.898 kb on + strandat 67.939 kb on + strand, within HP15_64at 67.954 kb on - strand, within HP15_64at 67.964 kb on - strand, within HP15_64at 67.981 kb on - strand, within HP15_64at 68.052 kb on + strand, within HP15_64at 68.085 kb on - strand, within HP15_64at 68.136 kb on + strand, within HP15_64at 68.167 kb on + strand, within HP15_64at 68.167 kb on + strand, within HP15_64at 68.167 kb on + strand, within HP15_64at 68.167 kb on + strand, within HP15_64at 68.167 kb on + strand, within HP15_64at 68.175 kb on - strand, within HP15_64at 68.175 kb on - strand, within HP15_64at 68.175 kb on - strand, within HP15_64at 68.175 kb on - strand, within HP15_64at 68.264 kb on + strand, within HP15_64at 68.370 kb on - strand, within HP15_64at 68.577 kb on - strand, within HP15_64at 68.686 kb on + strand, within HP15_64at 68.696 kb on + strand, within HP15_64at 68.702 kb on + strand, within HP15_64at 68.702 kb on + strand, within HP15_64at 68.702 kb on + strand, within HP15_64at 68.717 kb on + strand, within HP15_64at 68.736 kb on + strand, within HP15_64at 68.752 kb on - strand, within HP15_64at 68.757 kb on + strand, within HP15_64at 68.762 kb on + strand, within HP15_64at 68.762 kb on - strand, within HP15_64at 68.762 kb on - strand, within HP15_64at 68.762 kb on - strand, within HP15_64at 68.762 kb on - strand, within HP15_64at 68.762 kb on - strand, within HP15_64at 68.762 kb on - strand, within HP15_64at 68.775 kb on - strand, within HP15_64

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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66,025 + HP15_61 0.40 -1.2
66,105 + HP15_61 0.47 +0.3
66,105 + HP15_61 0.47 -0.6
66,105 + HP15_61 0.47 -0.8
66,105 + HP15_61 0.47 +0.4
66,105 + HP15_61 0.47 +0.0
66,113 - HP15_61 0.47 +1.8
66,113 - HP15_61 0.47 -0.0
66,113 - HP15_61 0.47 -0.2
66,113 - HP15_61 0.47 +0.6
66,113 - HP15_61 0.47 +0.6
66,161 - HP15_61 0.51 +0.6
66,192 - HP15_61 0.54 -0.2
66,199 + HP15_61 0.54 +0.7
66,224 - HP15_61 0.56 +0.1
66,225 - HP15_61 0.57 -0.3
66,230 + HP15_61 0.57 -0.9
66,283 - HP15_61 0.61 -1.9
66,447 + HP15_61 0.75 +0.3
66,472 + HP15_61 0.77 -0.6
66,489 + HP15_61 0.78 -1.0
66,489 + HP15_61 0.78 +0.8
66,489 + HP15_61 0.78 -0.7
66,497 - HP15_61 0.79 -0.1
66,497 - HP15_61 0.79 -0.2
66,514 - HP15_61 0.80 -0.3
66,520 + HP15_61 0.80 -0.0
66,521 - HP15_61 0.81 -0.5
66,561 - HP15_61 0.84 +0.4
66,563 + HP15_61 0.84 +0.5
66,563 + HP15_61 0.84 -0.5
66,620 - HP15_61 0.89 -0.0
66,642 + +1.7
66,659 + +0.2
66,677 - +0.2
66,736 - -3.3
66,788 + -0.4
66,799 - +0.3
66,839 - HP15_62 0.36 +0.4
66,844 + HP15_62 0.41 -0.1
66,919 + +0.2
66,927 - -0.3
66,958 - +0.4
66,984 - -1.3
66,984 - +0.3
67,022 - -0.2
67,022 - +0.4
67,137 + HP15_63 0.21 +1.0
67,186 - HP15_63 0.27 +0.6
67,441 + HP15_63 0.58 +0.6
67,441 - HP15_63 0.58 -0.5
67,559 - HP15_63 0.73 -1.4
67,570 + HP15_63 0.74 +0.1
67,580 + HP15_63 0.76 +1.0
67,604 + HP15_63 0.79 +1.3
67,612 - HP15_63 0.80 -0.2
67,612 - HP15_63 0.80 +0.3
67,617 - HP15_63 0.80 +0.1
67,689 + HP15_63 0.89 +1.6
67,692 - HP15_63 0.90 +0.8
67,882 + -0.0
67,898 + +1.0
67,939 + HP15_64 0.11 -1.1
67,954 - HP15_64 0.12 +1.3
67,964 - HP15_64 0.13 +0.7
67,981 - HP15_64 0.14 -0.3
68,052 + HP15_64 0.20 -1.6
68,085 - HP15_64 0.22 +1.0
68,136 + HP15_64 0.26 -1.2
68,167 + HP15_64 0.29 -0.0
68,167 + HP15_64 0.29 -0.7
68,167 + HP15_64 0.29 -0.2
68,167 + HP15_64 0.29 -0.3
68,167 + HP15_64 0.29 +0.0
68,175 - HP15_64 0.29 +0.8
68,175 - HP15_64 0.29 +1.2
68,175 - HP15_64 0.29 -0.6
68,175 - HP15_64 0.29 +1.8
68,264 + HP15_64 0.36 -0.3
68,370 - HP15_64 0.44 +0.2
68,577 - HP15_64 0.60 -1.9
68,686 + HP15_64 0.69 +0.8
68,696 + HP15_64 0.70 -0.5
68,702 + HP15_64 0.70 +1.4
68,702 + HP15_64 0.70 +0.3
68,702 + HP15_64 0.70 +0.2
68,717 + HP15_64 0.71 -0.4
68,736 + HP15_64 0.73 -2.1
68,752 - HP15_64 0.74 +0.6
68,757 + HP15_64 0.74 +0.2
68,762 + HP15_64 0.75 -0.2
68,762 - HP15_64 0.75 -0.1
68,762 - HP15_64 0.75 +0.2
68,762 - HP15_64 0.75 +0.3
68,762 - HP15_64 0.75 +0.3
68,762 - HP15_64 0.75 -0.2
68,762 - HP15_64 0.75 +0.8
68,775 - HP15_64 0.76 -0.9

Or see this region's nucleotide sequence