Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_598 and HP15_599 overlap by 4 nucleotides HP15_599 and HP15_600 overlap by 4 nucleotides
HP15_598: HP15_598 - phosphoesterase, PA-phosphatase, at 618,473 to 619,930
_598
HP15_599: HP15_599 - membrane protein containing Diguanylate cyclase, predicted domains, at 619,927 to 620,925
_599
HP15_600: HP15_600 - GGDEF domain protein, at 620,922 to 621,938
_600
Position (kb) 619
620
621 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 619.000 kb on - strand, within HP15_598 at 619.159 kb on - strand, within HP15_598 at 619.159 kb on - strand, within HP15_598 at 619.181 kb on - strand, within HP15_598 at 619.181 kb on - strand, within HP15_598 at 619.191 kb on - strand, within HP15_598 at 619.282 kb on + strand, within HP15_598 at 619.283 kb on - strand, within HP15_598 at 619.352 kb on - strand, within HP15_598 at 619.431 kb on - strand, within HP15_598 at 619.431 kb on - strand, within HP15_598 at 619.451 kb on + strand, within HP15_598 at 619.514 kb on + strand, within HP15_598 at 619.731 kb on + strand, within HP15_598 at 619.731 kb on + strand, within HP15_598 at 619.813 kb on - strand at 619.828 kb on - strand at 619.856 kb on + strand at 619.950 kb on + strand at 620.025 kb on + strand at 620.039 kb on + strand, within HP15_599 at 620.195 kb on + strand, within HP15_599 at 620.202 kb on + strand, within HP15_599 at 620.210 kb on - strand, within HP15_599 at 620.210 kb on - strand, within HP15_599 at 620.233 kb on - strand, within HP15_599 at 620.254 kb on - strand, within HP15_599 at 620.254 kb on - strand, within HP15_599 at 620.340 kb on - strand, within HP15_599 at 620.343 kb on - strand, within HP15_599 at 620.436 kb on + strand, within HP15_599 at 620.602 kb on - strand, within HP15_599 at 620.701 kb on - strand, within HP15_599 at 620.706 kb on - strand, within HP15_599 at 620.732 kb on + strand, within HP15_599 at 620.881 kb on - strand at 620.895 kb on + strand at 620.896 kb on + strand at 620.935 kb on - strand at 620.951 kb on + strand at 620.980 kb on + strand at 621.006 kb on + strand at 621.011 kb on + strand at 621.029 kb on - strand, within HP15_600 at 621.222 kb on - strand, within HP15_600 at 621.323 kb on - strand, within HP15_600 at 621.371 kb on - strand, within HP15_600 at 621.556 kb on - strand, within HP15_600 at 621.646 kb on + strand, within HP15_600 at 621.646 kb on + strand, within HP15_600 at 621.681 kb on + strand, within HP15_600 at 621.831 kb on + strand, within HP15_600 at 621.839 kb on - strand at 621.853 kb on + strand at 621.861 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 619,000 - HP15_598 0.36 +0.1 619,159 - HP15_598 0.47 +1.9 619,159 - HP15_598 0.47 +1.2 619,181 - HP15_598 0.49 +1.3 619,181 - HP15_598 0.49 +1.0 619,191 - HP15_598 0.49 +1.5 619,282 + HP15_598 0.55 +1.8 619,283 - HP15_598 0.56 +1.8 619,352 - HP15_598 0.60 +1.0 619,431 - HP15_598 0.66 +0.9 619,431 - HP15_598 0.66 +0.5 619,451 + HP15_598 0.67 +1.8 619,514 + HP15_598 0.71 +1.7 619,731 + HP15_598 0.86 +0.6 619,731 + HP15_598 0.86 +1.6 619,813 - +1.8 619,828 - -0.5 619,856 + +1.5 619,950 + +1.4 620,025 + -1.3 620,039 + HP15_599 0.11 -1.5 620,195 + HP15_599 0.27 -1.3 620,202 + HP15_599 0.28 -2.3 620,210 - HP15_599 0.28 -1.5 620,210 - HP15_599 0.28 -1.7 620,233 - HP15_599 0.31 -1.5 620,254 - HP15_599 0.33 -0.8 620,254 - HP15_599 0.33 -2.1 620,340 - HP15_599 0.41 -2.6 620,343 - HP15_599 0.42 -1.4 620,436 + HP15_599 0.51 -1.5 620,602 - HP15_599 0.68 -1.7 620,701 - HP15_599 0.77 -2.3 620,706 - HP15_599 0.78 -1.1 620,732 + HP15_599 0.81 -1.4 620,881 - -1.6 620,895 + -0.6 620,896 + -0.4 620,935 - +0.8 620,951 + -0.4 620,980 + -2.3 621,006 + +0.6 621,011 + -2.3 621,029 - HP15_600 0.11 -1.3 621,222 - HP15_600 0.29 -1.4 621,323 - HP15_600 0.39 -1.3 621,371 - HP15_600 0.44 -3.2 621,556 - HP15_600 0.62 -2.4 621,646 + HP15_600 0.71 -2.0 621,646 + HP15_600 0.71 -0.9 621,681 + HP15_600 0.75 -0.9 621,831 + HP15_600 0.89 -1.9 621,839 - +0.3 621,853 + -1.2 621,861 - -2.6
Or see this region's nucleotide sequence