Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g46 and HP15_p187g47 are separated by 103 nucleotides HP15_p187g47 and HP15_p187g48 are separated by 185 nucleotides HP15_p187g48 and HP15_p187g49 are separated by 48 nucleotides HP15_p187g49 and HP15_p187g50 are separated by 0 nucleotides
HP15_p187g46: HP15_p187g46 - exopolysaccharide tyrosine-protein kinase, at 38,818 to 41,028
_p187g46
HP15_p187g47: HP15_p187g47 - dTDP-glucose 4,6-dehydratase, at 41,132 to 42,205
_p187g47
HP15_p187g48: HP15_p187g48 - hypothetical protein, at 42,391 to 42,711
_p187g48
HP15_p187g49: HP15_p187g49 - dTDP-4-dehydrorhamnose reductase, at 42,760 to 43,134
_p187g49
HP15_p187g50: HP15_p187g50 - glucose-1-phosphate thymidylyltransferase 1, at 43,135 to 44,019
_p187g50
Position (kb) 41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 40.159 kb on - strand, within HP15_p187g46 at 40.197 kb on - strand, within HP15_p187g46 at 40.212 kb on - strand, within HP15_p187g46 at 40.265 kb on - strand, within HP15_p187g46 at 40.270 kb on - strand, within HP15_p187g46 at 40.270 kb on - strand, within HP15_p187g46 at 40.371 kb on - strand, within HP15_p187g46 at 40.415 kb on - strand, within HP15_p187g46 at 40.415 kb on - strand, within HP15_p187g46 at 40.415 kb on - strand, within HP15_p187g46 at 40.415 kb on - strand, within HP15_p187g46 at 40.422 kb on - strand, within HP15_p187g46 at 40.422 kb on - strand, within HP15_p187g46 at 40.422 kb on - strand, within HP15_p187g46 at 40.439 kb on - strand, within HP15_p187g46 at 40.466 kb on + strand, within HP15_p187g46 at 40.467 kb on + strand, within HP15_p187g46 at 40.490 kb on + strand, within HP15_p187g46 at 40.498 kb on - strand, within HP15_p187g46 at 40.577 kb on + strand, within HP15_p187g46 at 40.585 kb on + strand, within HP15_p187g46 at 40.675 kb on + strand, within HP15_p187g46 at 40.675 kb on + strand, within HP15_p187g46 at 40.675 kb on + strand, within HP15_p187g46 at 40.683 kb on - strand, within HP15_p187g46 at 40.683 kb on - strand, within HP15_p187g46 at 40.690 kb on + strand, within HP15_p187g46 at 40.693 kb on - strand, within HP15_p187g46 at 40.698 kb on - strand, within HP15_p187g46 at 40.698 kb on - strand, within HP15_p187g46 at 40.698 kb on - strand, within HP15_p187g46 at 40.713 kb on - strand, within HP15_p187g46 at 40.713 kb on - strand, within HP15_p187g46 at 40.723 kb on - strand, within HP15_p187g46 at 40.738 kb on + strand, within HP15_p187g46 at 40.860 kb on - strand at 40.861 kb on - strand at 40.873 kb on + strand at 40.975 kb on + strand at 41.130 kb on + strand at 41.167 kb on - strand at 41.190 kb on + strand at 41.221 kb on - strand at 41.256 kb on - strand, within HP15_p187g47 at 41.256 kb on - strand, within HP15_p187g47 at 41.256 kb on - strand, within HP15_p187g47 at 41.289 kb on + strand, within HP15_p187g47 at 41.289 kb on + strand, within HP15_p187g47 at 41.289 kb on + strand, within HP15_p187g47 at 41.289 kb on - strand, within HP15_p187g47 at 41.297 kb on - strand, within HP15_p187g47 at 41.322 kb on - strand, within HP15_p187g47 at 41.324 kb on - strand, within HP15_p187g47 at 41.327 kb on + strand, within HP15_p187g47 at 41.329 kb on - strand, within HP15_p187g47 at 41.333 kb on + strand, within HP15_p187g47 at 41.358 kb on - strand, within HP15_p187g47 at 41.360 kb on + strand, within HP15_p187g47 at 41.360 kb on + strand, within HP15_p187g47 at 41.360 kb on + strand, within HP15_p187g47 at 41.360 kb on + strand, within HP15_p187g47 at 41.360 kb on + strand, within HP15_p187g47 at 41.360 kb on + strand, within HP15_p187g47 at 41.366 kb on - strand, within HP15_p187g47 at 41.368 kb on - strand, within HP15_p187g47 at 41.375 kb on + strand, within HP15_p187g47 at 41.375 kb on + strand, within HP15_p187g47 at 41.392 kb on - strand, within HP15_p187g47 at 41.405 kb on - strand, within HP15_p187g47 at 41.440 kb on + strand, within HP15_p187g47 at 41.442 kb on + strand, within HP15_p187g47 at 41.442 kb on + strand, within HP15_p187g47 at 41.448 kb on - strand, within HP15_p187g47 at 41.448 kb on - strand, within HP15_p187g47 at 41.450 kb on - strand, within HP15_p187g47 at 41.450 kb on - strand, within HP15_p187g47 at 41.450 kb on - strand, within HP15_p187g47 at 41.460 kb on - strand, within HP15_p187g47 at 41.473 kb on - strand, within HP15_p187g47 at 41.536 kb on + strand, within HP15_p187g47 at 41.536 kb on + strand, within HP15_p187g47 at 41.536 kb on + strand, within HP15_p187g47 at 41.539 kb on - strand, within HP15_p187g47 at 41.544 kb on - strand, within HP15_p187g47 at 41.545 kb on - strand, within HP15_p187g47 at 41.577 kb on + strand, within HP15_p187g47 at 41.579 kb on + strand, within HP15_p187g47 at 41.593 kb on - strand, within HP15_p187g47 at 41.612 kb on + strand, within HP15_p187g47 at 41.620 kb on - strand, within HP15_p187g47 at 41.641 kb on + strand, within HP15_p187g47 at 41.654 kb on - strand, within HP15_p187g47 at 41.668 kb on - strand, within HP15_p187g47 at 41.687 kb on - strand, within HP15_p187g47 at 41.693 kb on + strand, within HP15_p187g47 at 41.827 kb on + strand, within HP15_p187g47 at 41.827 kb on + strand, within HP15_p187g47 at 41.827 kb on + strand, within HP15_p187g47 at 41.829 kb on - strand, within HP15_p187g47 at 41.835 kb on - strand, within HP15_p187g47 at 41.840 kb on - strand, within HP15_p187g47 at 41.842 kb on - strand, within HP15_p187g47 at 41.853 kb on - strand, within HP15_p187g47 at 41.865 kb on - strand, within HP15_p187g47 at 41.899 kb on - strand, within HP15_p187g47 at 41.900 kb on - strand, within HP15_p187g47 at 41.921 kb on - strand, within HP15_p187g47 at 42.028 kb on + strand, within HP15_p187g47 at 42.028 kb on + strand, within HP15_p187g47 at 42.034 kb on + strand, within HP15_p187g47 at 42.116 kb on + strand at 42.124 kb on - strand at 42.127 kb on - strand at 42.133 kb on + strand at 42.141 kb on - strand at 42.195 kb on - strand at 42.276 kb on - strand at 42.301 kb on - strand at 42.323 kb on + strand at 42.357 kb on - strand at 42.365 kb on - strand at 42.372 kb on + strand at 42.385 kb on - strand at 42.390 kb on - strand at 42.401 kb on - strand at 42.419 kb on + strand at 42.425 kb on + strand, within HP15_p187g48 at 42.429 kb on + strand, within HP15_p187g48 at 42.469 kb on + strand, within HP15_p187g48 at 42.469 kb on + strand, within HP15_p187g48 at 42.477 kb on - strand, within HP15_p187g48 at 42.477 kb on - strand, within HP15_p187g48 at 42.477 kb on - strand, within HP15_p187g48 at 42.477 kb on - strand, within HP15_p187g48 at 42.530 kb on - strand, within HP15_p187g48 at 42.546 kb on - strand, within HP15_p187g48 at 42.571 kb on + strand, within HP15_p187g48 at 42.579 kb on - strand, within HP15_p187g48 at 42.608 kb on + strand, within HP15_p187g48 at 42.608 kb on + strand, within HP15_p187g48 at 42.701 kb on + strand at 42.709 kb on - strand at 42.709 kb on - strand at 42.776 kb on + strand at 42.784 kb on - strand at 42.827 kb on - strand, within HP15_p187g49 at 42.876 kb on - strand, within HP15_p187g49 at 42.896 kb on + strand, within HP15_p187g49 at 42.936 kb on - strand, within HP15_p187g49 at 42.988 kb on + strand, within HP15_p187g49 at 43.004 kb on + strand, within HP15_p187g49 at 43.053 kb on + strand, within HP15_p187g49 at 43.053 kb on + strand, within HP15_p187g49 at 43.061 kb on - strand, within HP15_p187g49 at 43.071 kb on + strand, within HP15_p187g49 at 43.117 kb on - strand at 43.142 kb on + strand at 43.142 kb on + strand at 43.150 kb on - strand at 43.173 kb on + strand at 43.196 kb on + strand at 43.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 40,159 - HP15_p187g46 0.61 -2.9 40,197 - HP15_p187g46 0.62 +1.2 40,212 - HP15_p187g46 0.63 -1.8 40,265 - HP15_p187g46 0.65 +0.5 40,270 - HP15_p187g46 0.66 -1.5 40,270 - HP15_p187g46 0.66 +1.5 40,371 - HP15_p187g46 0.70 -0.8 40,415 - HP15_p187g46 0.72 +0.7 40,415 - HP15_p187g46 0.72 -0.6 40,415 - HP15_p187g46 0.72 -0.3 40,415 - HP15_p187g46 0.72 +0.1 40,422 - HP15_p187g46 0.73 -0.1 40,422 - HP15_p187g46 0.73 +0.5 40,422 - HP15_p187g46 0.73 -0.5 40,439 - HP15_p187g46 0.73 -1.4 40,466 + HP15_p187g46 0.75 -0.3 40,467 + HP15_p187g46 0.75 -0.1 40,490 + HP15_p187g46 0.76 +1.1 40,498 - HP15_p187g46 0.76 -0.1 40,577 + HP15_p187g46 0.80 +0.3 40,585 + HP15_p187g46 0.80 -0.1 40,675 + HP15_p187g46 0.84 -0.1 40,675 + HP15_p187g46 0.84 -0.1 40,675 + HP15_p187g46 0.84 -2.5 40,683 - HP15_p187g46 0.84 +0.3 40,683 - HP15_p187g46 0.84 +0.4 40,690 + HP15_p187g46 0.85 -0.7 40,693 - HP15_p187g46 0.85 +0.3 40,698 - HP15_p187g46 0.85 -0.9 40,698 - HP15_p187g46 0.85 +0.0 40,698 - HP15_p187g46 0.85 -0.9 40,713 - HP15_p187g46 0.86 -1.2 40,713 - HP15_p187g46 0.86 -0.5 40,723 - HP15_p187g46 0.86 -0.7 40,738 + HP15_p187g46 0.87 +0.6 40,860 - +0.3 40,861 - -0.2 40,873 + -0.1 40,975 + -0.4 41,130 + +0.3 41,167 - +0.7 41,190 + -0.0 41,221 - -0.8 41,256 - HP15_p187g47 0.12 +0.2 41,256 - HP15_p187g47 0.12 -1.3 41,256 - HP15_p187g47 0.12 -1.4 41,289 + HP15_p187g47 0.15 -1.3 41,289 + HP15_p187g47 0.15 +0.3 41,289 + HP15_p187g47 0.15 +1.3 41,289 - HP15_p187g47 0.15 -2.7 41,297 - HP15_p187g47 0.15 +0.4 41,322 - HP15_p187g47 0.18 +0.8 41,324 - HP15_p187g47 0.18 +0.2 41,327 + HP15_p187g47 0.18 -0.3 41,329 - HP15_p187g47 0.18 +0.6 41,333 + HP15_p187g47 0.19 -0.4 41,358 - HP15_p187g47 0.21 -1.1 41,360 + HP15_p187g47 0.21 +0.7 41,360 + HP15_p187g47 0.21 -0.7 41,360 + HP15_p187g47 0.21 -0.8 41,360 + HP15_p187g47 0.21 +0.1 41,360 + HP15_p187g47 0.21 -1.2 41,360 + HP15_p187g47 0.21 -0.1 41,366 - HP15_p187g47 0.22 +0.4 41,368 - HP15_p187g47 0.22 -0.1 41,375 + HP15_p187g47 0.23 +0.3 41,375 + HP15_p187g47 0.23 +1.4 41,392 - HP15_p187g47 0.24 +0.3 41,405 - HP15_p187g47 0.25 +0.8 41,440 + HP15_p187g47 0.29 +0.3 41,442 + HP15_p187g47 0.29 -0.3 41,442 + HP15_p187g47 0.29 +0.8 41,448 - HP15_p187g47 0.29 +0.1 41,448 - HP15_p187g47 0.29 +0.9 41,450 - HP15_p187g47 0.30 -1.6 41,450 - HP15_p187g47 0.30 +1.0 41,450 - HP15_p187g47 0.30 -0.7 41,460 - HP15_p187g47 0.31 -0.8 41,473 - HP15_p187g47 0.32 -0.2 41,536 + HP15_p187g47 0.38 +0.3 41,536 + HP15_p187g47 0.38 -0.7 41,536 + HP15_p187g47 0.38 +0.1 41,539 - HP15_p187g47 0.38 -0.8 41,544 - HP15_p187g47 0.38 +1.1 41,545 - HP15_p187g47 0.38 +1.1 41,577 + HP15_p187g47 0.41 +0.9 41,579 + HP15_p187g47 0.42 +1.1 41,593 - HP15_p187g47 0.43 -0.3 41,612 + HP15_p187g47 0.45 +0.6 41,620 - HP15_p187g47 0.45 +0.1 41,641 + HP15_p187g47 0.47 +0.4 41,654 - HP15_p187g47 0.49 -0.3 41,668 - HP15_p187g47 0.50 -2.7 41,687 - HP15_p187g47 0.52 -1.5 41,693 + HP15_p187g47 0.52 +0.3 41,827 + HP15_p187g47 0.65 +0.6 41,827 + HP15_p187g47 0.65 +3.2 41,827 + HP15_p187g47 0.65 -0.6 41,829 - HP15_p187g47 0.65 -0.4 41,835 - HP15_p187g47 0.65 +0.4 41,840 - HP15_p187g47 0.66 +0.3 41,842 - HP15_p187g47 0.66 +1.2 41,853 - HP15_p187g47 0.67 +0.3 41,865 - HP15_p187g47 0.68 +1.4 41,899 - HP15_p187g47 0.71 -0.2 41,900 - HP15_p187g47 0.72 +0.1 41,921 - HP15_p187g47 0.73 +1.6 42,028 + HP15_p187g47 0.83 -1.1 42,028 + HP15_p187g47 0.83 -0.6 42,034 + HP15_p187g47 0.84 +0.3 42,116 + -0.5 42,124 - -0.5 42,127 - +0.9 42,133 + -0.2 42,141 - +0.6 42,195 - -0.3 42,276 - -0.6 42,301 - +1.1 42,323 + -0.4 42,357 - +0.8 42,365 - +0.0 42,372 + -0.4 42,385 - -1.3 42,390 - -1.5 42,401 - -0.2 42,419 + -0.3 42,425 + HP15_p187g48 0.11 +0.1 42,429 + HP15_p187g48 0.12 +0.4 42,469 + HP15_p187g48 0.24 -0.2 42,469 + HP15_p187g48 0.24 +0.8 42,477 - HP15_p187g48 0.27 -0.7 42,477 - HP15_p187g48 0.27 -0.3 42,477 - HP15_p187g48 0.27 +0.5 42,477 - HP15_p187g48 0.27 -0.2 42,530 - HP15_p187g48 0.43 -0.4 42,546 - HP15_p187g48 0.48 -0.0 42,571 + HP15_p187g48 0.56 -0.9 42,579 - HP15_p187g48 0.59 -0.1 42,608 + HP15_p187g48 0.68 +0.3 42,608 + HP15_p187g48 0.68 -0.8 42,701 + +0.5 42,709 - -1.5 42,709 - -0.2 42,776 + +1.4 42,784 - -0.7 42,827 - HP15_p187g49 0.18 +1.4 42,876 - HP15_p187g49 0.31 -0.9 42,896 + HP15_p187g49 0.36 +0.8 42,936 - HP15_p187g49 0.47 -0.2 42,988 + HP15_p187g49 0.61 -0.7 43,004 + HP15_p187g49 0.65 -1.0 43,053 + HP15_p187g49 0.78 +0.1 43,053 + HP15_p187g49 0.78 +0.4 43,061 - HP15_p187g49 0.80 +0.3 43,071 + HP15_p187g49 0.83 -0.0 43,117 - +1.0 43,142 + +0.7 43,142 + -0.7 43,150 - +0.4 43,173 + -0.8 43,196 + +1.7 43,204 - +1.4
Or see this region's nucleotide sequence