Strain Fitness in Marinobacter adhaerens HP15 around HP15_p42g42

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p42g40 and HP15_p42g41 are separated by 11 nucleotidesHP15_p42g41 and HP15_p42g42 are separated by 19 nucleotidesHP15_p42g42 and HP15_p42g43 are separated by 11 nucleotidesHP15_p42g43 and HP15_p42g44 are separated by 9 nucleotides HP15_p42g40: HP15_p42g40 - TrbN, putative muramidase, at 30,380 to 31,015 _p42g40 HP15_p42g41: HP15_p42g41 - TraL protein, at 31,027 to 31,509 _p42g41 HP15_p42g42: HP15_p42g42 - conjugal transfer, TrbL, at 31,529 to 33,385 _p42g42 HP15_p42g43: HP15_p42g43 - TrbK entry exclusion protein-like protein, at 33,397 to 33,624 _p42g43 HP15_p42g44: HP15_p42g44 - mating pair formation protein TrbJ, at 33,634 to 34,395 _p42g44 Position (kb) 31 32 33 34Strain fitness (log2 ratio) -2 -1 0 1 2 3at 30.568 kb on - strand, within HP15_p42g40at 30.568 kb on - strand, within HP15_p42g40at 30.595 kb on + strand, within HP15_p42g40at 30.620 kb on - strand, within HP15_p42g40at 30.629 kb on + strand, within HP15_p42g40at 30.708 kb on + strand, within HP15_p42g40at 30.713 kb on + strand, within HP15_p42g40at 30.718 kb on + strand, within HP15_p42g40at 30.726 kb on - strand, within HP15_p42g40at 30.726 kb on - strand, within HP15_p42g40at 30.726 kb on - strand, within HP15_p42g40at 30.726 kb on - strand, within HP15_p42g40at 30.741 kb on - strand, within HP15_p42g40at 30.741 kb on - strand, within HP15_p42g40at 30.771 kb on - strand, within HP15_p42g40at 30.780 kb on - strand, within HP15_p42g40at 30.818 kb on - strand, within HP15_p42g40at 30.825 kb on + strand, within HP15_p42g40at 30.825 kb on + strand, within HP15_p42g40at 30.825 kb on + strand, within HP15_p42g40at 30.825 kb on - strand, within HP15_p42g40at 30.833 kb on - strand, within HP15_p42g40at 30.833 kb on - strand, within HP15_p42g40at 30.833 kb on - strand, within HP15_p42g40at 30.835 kb on + strand, within HP15_p42g40at 30.835 kb on + strand, within HP15_p42g40at 30.838 kb on - strand, within HP15_p42g40at 30.840 kb on + strand, within HP15_p42g40at 30.914 kb on - strand, within HP15_p42g40at 30.914 kb on - strand, within HP15_p42g40at 31.050 kb on - strandat 31.062 kb on - strandat 31.087 kb on + strand, within HP15_p42g41at 31.105 kb on + strand, within HP15_p42g41at 31.128 kb on + strand, within HP15_p42g41at 31.151 kb on + strand, within HP15_p42g41at 31.151 kb on - strand, within HP15_p42g41at 31.213 kb on + strand, within HP15_p42g41at 31.218 kb on + strand, within HP15_p42g41at 31.221 kb on - strand, within HP15_p42g41at 31.223 kb on + strand, within HP15_p42g41at 31.223 kb on + strand, within HP15_p42g41at 31.223 kb on + strand, within HP15_p42g41at 31.226 kb on - strand, within HP15_p42g41at 31.231 kb on - strand, within HP15_p42g41at 31.231 kb on - strand, within HP15_p42g41at 31.231 kb on - strand, within HP15_p42g41at 31.263 kb on + strand, within HP15_p42g41at 31.271 kb on + strand, within HP15_p42g41at 31.278 kb on + strand, within HP15_p42g41at 31.286 kb on + strand, within HP15_p42g41at 31.286 kb on + strand, within HP15_p42g41at 31.294 kb on - strand, within HP15_p42g41at 31.294 kb on - strand, within HP15_p42g41at 31.390 kb on + strand, within HP15_p42g41at 31.397 kb on + strand, within HP15_p42g41at 31.411 kb on + strand, within HP15_p42g41at 31.461 kb on + strandat 31.465 kb on - strandat 31.482 kb on + strandat 31.490 kb on - strandat 31.490 kb on - strandat 31.636 kb on - strandat 31.682 kb on - strandat 31.689 kb on + strandat 31.689 kb on + strandat 31.697 kb on - strandat 31.702 kb on - strandat 31.779 kb on - strand, within HP15_p42g42at 31.808 kb on + strand, within HP15_p42g42at 31.836 kb on + strand, within HP15_p42g42at 31.838 kb on + strand, within HP15_p42g42at 31.838 kb on + strand, within HP15_p42g42at 31.838 kb on + strand, within HP15_p42g42at 31.851 kb on - strand, within HP15_p42g42at 31.856 kb on + strand, within HP15_p42g42at 31.864 kb on - strand, within HP15_p42g42at 31.870 kb on - strand, within HP15_p42g42at 31.917 kb on + strand, within HP15_p42g42at 31.917 kb on + strand, within HP15_p42g42at 31.917 kb on + strand, within HP15_p42g42at 31.917 kb on + strand, within HP15_p42g42at 31.923 kb on + strand, within HP15_p42g42at 31.925 kb on - strand, within HP15_p42g42at 31.925 kb on - strand, within HP15_p42g42at 31.925 kb on - strand, within HP15_p42g42at 31.925 kb on - strand, within HP15_p42g42at 31.925 kb on - strand, within HP15_p42g42at 31.944 kb on + strand, within HP15_p42g42at 31.946 kb on - strand, within HP15_p42g42at 32.078 kb on + strand, within HP15_p42g42at 32.086 kb on - strand, within HP15_p42g42at 32.141 kb on + strand, within HP15_p42g42at 32.154 kb on - strand, within HP15_p42g42at 32.162 kb on - strand, within HP15_p42g42at 32.167 kb on + strand, within HP15_p42g42at 32.193 kb on - strand, within HP15_p42g42at 32.198 kb on + strand, within HP15_p42g42at 32.206 kb on - strand, within HP15_p42g42at 32.260 kb on + strand, within HP15_p42g42at 32.263 kb on - strand, within HP15_p42g42at 32.384 kb on - strand, within HP15_p42g42at 32.398 kb on - strand, within HP15_p42g42at 32.507 kb on + strand, within HP15_p42g42at 32.515 kb on - strand, within HP15_p42g42at 32.571 kb on + strand, within HP15_p42g42at 32.714 kb on - strand, within HP15_p42g42at 32.736 kb on + strand, within HP15_p42g42at 32.758 kb on + strand, within HP15_p42g42at 32.758 kb on + strand, within HP15_p42g42at 32.765 kb on + strand, within HP15_p42g42at 32.864 kb on - strand, within HP15_p42g42at 32.887 kb on - strand, within HP15_p42g42at 32.992 kb on + strand, within HP15_p42g42at 33.046 kb on - strand, within HP15_p42g42at 33.066 kb on - strand, within HP15_p42g42at 33.144 kb on + strand, within HP15_p42g42at 33.147 kb on - strand, within HP15_p42g42at 33.152 kb on - strand, within HP15_p42g42at 33.152 kb on - strand, within HP15_p42g42at 33.154 kb on + strand, within HP15_p42g42at 33.179 kb on - strand, within HP15_p42g42at 33.266 kb on + strandat 33.360 kb on + strandat 33.368 kb on - strandat 33.434 kb on + strand, within HP15_p42g43at 33.493 kb on - strand, within HP15_p42g43at 33.574 kb on - strand, within HP15_p42g43at 33.579 kb on + strand, within HP15_p42g43at 33.641 kb on - strandat 33.645 kb on + strandat 33.653 kb on - strandat 33.654 kb on - strandat 33.684 kb on - strandat 33.689 kb on - strandat 33.697 kb on + strandat 33.790 kb on + strand, within HP15_p42g44at 34.009 kb on - strand, within HP15_p42g44at 34.021 kb on + strand, within HP15_p42g44at 34.045 kb on - strand, within HP15_p42g44at 34.066 kb on - strand, within HP15_p42g44at 34.068 kb on + strand, within HP15_p42g44at 34.120 kb on - strand, within HP15_p42g44at 34.172 kb on + strand, within HP15_p42g44at 34.194 kb on - strand, within HP15_p42g44at 34.290 kb on + strand, within HP15_p42g44at 34.290 kb on + strand, within HP15_p42g44at 34.290 kb on + strand, within HP15_p42g44at 34.332 kb on + strandat 34.335 kb on - strandat 34.357 kb on + strandat 34.362 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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30,568 - HP15_p42g40 0.30 +0.1
30,568 - HP15_p42g40 0.30 -1.3
30,595 + HP15_p42g40 0.34 -1.1
30,620 - HP15_p42g40 0.38 +0.4
30,629 + HP15_p42g40 0.39 -0.6
30,708 + HP15_p42g40 0.52 +0.7
30,713 + HP15_p42g40 0.52 -2.2
30,718 + HP15_p42g40 0.53 +0.3
30,726 - HP15_p42g40 0.54 +0.4
30,726 - HP15_p42g40 0.54 +0.3
30,726 - HP15_p42g40 0.54 -0.8
30,726 - HP15_p42g40 0.54 -0.5
30,741 - HP15_p42g40 0.57 -1.2
30,741 - HP15_p42g40 0.57 +0.3
30,771 - HP15_p42g40 0.61 -0.2
30,780 - HP15_p42g40 0.63 -0.5
30,818 - HP15_p42g40 0.69 +0.2
30,825 + HP15_p42g40 0.70 -0.1
30,825 + HP15_p42g40 0.70 +0.2
30,825 + HP15_p42g40 0.70 -0.3
30,825 - HP15_p42g40 0.70 -0.4
30,833 - HP15_p42g40 0.71 +0.6
30,833 - HP15_p42g40 0.71 -2.0
30,833 - HP15_p42g40 0.71 -0.5
30,835 + HP15_p42g40 0.72 -0.1
30,835 + HP15_p42g40 0.72 -0.3
30,838 - HP15_p42g40 0.72 -0.8
30,840 + HP15_p42g40 0.72 +0.3
30,914 - HP15_p42g40 0.84 +0.6
30,914 - HP15_p42g40 0.84 +0.7
31,050 - +0.1
31,062 - -0.5
31,087 + HP15_p42g41 0.12 +0.3
31,105 + HP15_p42g41 0.16 +0.3
31,128 + HP15_p42g41 0.21 -0.7
31,151 + HP15_p42g41 0.26 -0.3
31,151 - HP15_p42g41 0.26 +0.1
31,213 + HP15_p42g41 0.39 +0.2
31,218 + HP15_p42g41 0.40 -0.7
31,221 - HP15_p42g41 0.40 -0.3
31,223 + HP15_p42g41 0.41 +0.6
31,223 + HP15_p42g41 0.41 +0.4
31,223 + HP15_p42g41 0.41 -1.9
31,226 - HP15_p42g41 0.41 -0.1
31,231 - HP15_p42g41 0.42 -0.8
31,231 - HP15_p42g41 0.42 +1.1
31,231 - HP15_p42g41 0.42 -1.3
31,263 + HP15_p42g41 0.49 +0.4
31,271 + HP15_p42g41 0.51 -0.8
31,278 + HP15_p42g41 0.52 -0.4
31,286 + HP15_p42g41 0.54 +0.2
31,286 + HP15_p42g41 0.54 -1.1
31,294 - HP15_p42g41 0.55 -0.4
31,294 - HP15_p42g41 0.55 +0.8
31,390 + HP15_p42g41 0.75 -0.2
31,397 + HP15_p42g41 0.77 -0.6
31,411 + HP15_p42g41 0.80 +0.0
31,461 + +2.3
31,465 - +0.0
31,482 + -0.4
31,490 - +1.1
31,490 - -1.3
31,636 - -0.5
31,682 - -0.4
31,689 + -0.0
31,689 + -0.4
31,697 - -0.9
31,702 - +0.7
31,779 - HP15_p42g42 0.13 -0.6
31,808 + HP15_p42g42 0.15 -0.1
31,836 + HP15_p42g42 0.17 -0.5
31,838 + HP15_p42g42 0.17 +0.2
31,838 + HP15_p42g42 0.17 -0.5
31,838 + HP15_p42g42 0.17 +0.2
31,851 - HP15_p42g42 0.17 +0.6
31,856 + HP15_p42g42 0.18 -0.3
31,864 - HP15_p42g42 0.18 +0.4
31,870 - HP15_p42g42 0.18 +0.2
31,917 + HP15_p42g42 0.21 +0.3
31,917 + HP15_p42g42 0.21 +2.8
31,917 + HP15_p42g42 0.21 +0.1
31,917 + HP15_p42g42 0.21 +0.2
31,923 + HP15_p42g42 0.21 -0.3
31,925 - HP15_p42g42 0.21 -0.3
31,925 - HP15_p42g42 0.21 -0.1
31,925 - HP15_p42g42 0.21 +0.7
31,925 - HP15_p42g42 0.21 +1.6
31,925 - HP15_p42g42 0.21 -0.2
31,944 + HP15_p42g42 0.22 +2.0
31,946 - HP15_p42g42 0.22 +0.9
32,078 + HP15_p42g42 0.30 +0.6
32,086 - HP15_p42g42 0.30 -0.2
32,141 + HP15_p42g42 0.33 -0.1
32,154 - HP15_p42g42 0.34 +2.3
32,162 - HP15_p42g42 0.34 +0.8
32,167 + HP15_p42g42 0.34 +0.3
32,193 - HP15_p42g42 0.36 +1.6
32,198 + HP15_p42g42 0.36 +0.2
32,206 - HP15_p42g42 0.36 -1.0
32,260 + HP15_p42g42 0.39 -2.7
32,263 - HP15_p42g42 0.40 +0.5
32,384 - HP15_p42g42 0.46 +1.0
32,398 - HP15_p42g42 0.47 +1.5
32,507 + HP15_p42g42 0.53 +0.6
32,515 - HP15_p42g42 0.53 +1.0
32,571 + HP15_p42g42 0.56 +0.3
32,714 - HP15_p42g42 0.64 -0.5
32,736 + HP15_p42g42 0.65 -0.1
32,758 + HP15_p42g42 0.66 +0.5
32,758 + HP15_p42g42 0.66 +0.2
32,765 + HP15_p42g42 0.67 -1.0
32,864 - HP15_p42g42 0.72 +0.6
32,887 - HP15_p42g42 0.73 +0.8
32,992 + HP15_p42g42 0.79 -0.8
33,046 - HP15_p42g42 0.82 +0.5
33,066 - HP15_p42g42 0.83 +0.4
33,144 + HP15_p42g42 0.87 -2.0
33,147 - HP15_p42g42 0.87 +1.4
33,152 - HP15_p42g42 0.87 +0.5
33,152 - HP15_p42g42 0.87 +1.3
33,154 + HP15_p42g42 0.88 -0.1
33,179 - HP15_p42g42 0.89 +0.4
33,266 + -1.0
33,360 + -0.6
33,368 - +0.4
33,434 + HP15_p42g43 0.16 +0.1
33,493 - HP15_p42g43 0.42 -0.4
33,574 - HP15_p42g43 0.78 +0.4
33,579 + HP15_p42g43 0.80 -0.1
33,641 - +1.3
33,645 + +0.5
33,653 - +0.5
33,654 - +0.2
33,684 - +0.6
33,689 - +0.7
33,697 + -0.5
33,790 + HP15_p42g44 0.20 -0.4
34,009 - HP15_p42g44 0.49 +0.0
34,021 + HP15_p42g44 0.51 -0.1
34,045 - HP15_p42g44 0.54 +0.8
34,066 - HP15_p42g44 0.57 +0.4
34,068 + HP15_p42g44 0.57 +0.6
34,120 - HP15_p42g44 0.64 +0.4
34,172 + HP15_p42g44 0.71 -0.5
34,194 - HP15_p42g44 0.73 -0.0
34,290 + HP15_p42g44 0.86 -0.3
34,290 + HP15_p42g44 0.86 +0.3
34,290 + HP15_p42g44 0.86 +0.1
34,332 + -0.0
34,335 - -0.9
34,357 + +0.4
34,362 + +0.9

Or see this region's nucleotide sequence