Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4175 and HP15_4176 are separated by 361 nucleotides HP15_4176 and HP15_4177 are separated by 80 nucleotides
HP15_4175: HP15_4175 - formate dehydrogenase, subunit FdhD, at 4,413,319 to 4,414,173
_4175
HP15_4176: HP15_4176 - electron-transferring-flavoprotein dehydrogenase, at 4,414,535 to 4,416,187
_4176
HP15_4177: HP15_4177 - acetyl-CoA synthetase, at 4,416,268 to 4,418,256
_4177
Position (kb)
4414
4415
4416
4417 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4413.562 kb on - strand, within HP15_4175 at 4413.681 kb on - strand, within HP15_4175 at 4413.692 kb on - strand, within HP15_4175 at 4413.714 kb on + strand, within HP15_4175 at 4413.714 kb on + strand, within HP15_4175 at 4413.734 kb on + strand, within HP15_4175 at 4413.759 kb on - strand, within HP15_4175 at 4413.760 kb on - strand, within HP15_4175 at 4413.812 kb on + strand, within HP15_4175 at 4413.812 kb on + strand, within HP15_4175 at 4413.820 kb on - strand, within HP15_4175 at 4413.820 kb on - strand, within HP15_4175 at 4413.853 kb on + strand, within HP15_4175 at 4413.878 kb on - strand, within HP15_4175 at 4413.925 kb on + strand, within HP15_4175 at 4413.926 kb on - strand, within HP15_4175 at 4413.968 kb on - strand, within HP15_4175 at 4414.006 kb on - strand, within HP15_4175 at 4414.013 kb on + strand, within HP15_4175 at 4414.024 kb on + strand, within HP15_4175 at 4414.047 kb on - strand, within HP15_4175 at 4414.081 kb on + strand, within HP15_4175 at 4414.102 kb on + strand at 4414.112 kb on + strand at 4414.265 kb on + strand at 4414.328 kb on - strand at 4414.328 kb on - strand at 4414.328 kb on - strand at 4414.328 kb on - strand at 4414.328 kb on - strand at 4414.365 kb on + strand at 4414.411 kb on - strand at 4414.422 kb on + strand at 4414.474 kb on + strand at 4414.488 kb on + strand at 4414.496 kb on - strand at 4414.496 kb on - strand at 4414.532 kb on + strand at 4414.966 kb on + strand, within HP15_4176 at 4415.667 kb on - strand, within HP15_4176 at 4416.320 kb on + strand at 4416.325 kb on + strand at 4416.333 kb on - strand at 4416.333 kb on - strand at 4416.391 kb on - strand at 4416.414 kb on + strand at 4416.450 kb on + strand at 4416.597 kb on + strand, within HP15_4177 at 4416.613 kb on - strand, within HP15_4177 at 4416.654 kb on + strand, within HP15_4177 at 4416.711 kb on + strand, within HP15_4177 at 4416.735 kb on + strand, within HP15_4177 at 4416.737 kb on + strand, within HP15_4177 at 4416.754 kb on - strand, within HP15_4177 at 4416.769 kb on - strand, within HP15_4177 at 4416.832 kb on - strand, within HP15_4177 at 4416.838 kb on + strand, within HP15_4177 at 4416.846 kb on - strand, within HP15_4177 at 4416.872 kb on + strand, within HP15_4177
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 4,413,562 - HP15_4175 0.28 -0.5 4,413,681 - HP15_4175 0.42 +0.2 4,413,692 - HP15_4175 0.44 -1.1 4,413,714 + HP15_4175 0.46 +0.5 4,413,714 + HP15_4175 0.46 +0.6 4,413,734 + HP15_4175 0.49 -1.6 4,413,759 - HP15_4175 0.51 +0.4 4,413,760 - HP15_4175 0.52 +0.0 4,413,812 + HP15_4175 0.58 -0.3 4,413,812 + HP15_4175 0.58 -0.2 4,413,820 - HP15_4175 0.59 -1.6 4,413,820 - HP15_4175 0.59 -0.7 4,413,853 + HP15_4175 0.62 +0.4 4,413,878 - HP15_4175 0.65 +0.3 4,413,925 + HP15_4175 0.71 +0.9 4,413,926 - HP15_4175 0.71 +0.3 4,413,968 - HP15_4175 0.76 +0.1 4,414,006 - HP15_4175 0.80 +2.7 4,414,013 + HP15_4175 0.81 +0.7 4,414,024 + HP15_4175 0.82 -0.4 4,414,047 - HP15_4175 0.85 -1.6 4,414,081 + HP15_4175 0.89 -2.0 4,414,102 + -1.8 4,414,112 + -0.8 4,414,265 + -0.1 4,414,328 - +0.0 4,414,328 - +0.2 4,414,328 - -0.7 4,414,328 - -1.3 4,414,328 - -0.3 4,414,365 + +1.2 4,414,411 - +0.3 4,414,422 + +0.0 4,414,474 + -0.2 4,414,488 + -1.0 4,414,496 - -0.2 4,414,496 - -1.0 4,414,532 + +0.4 4,414,966 + HP15_4176 0.26 -0.5 4,415,667 - HP15_4176 0.68 -1.8 4,416,320 + -0.8 4,416,325 + +1.1 4,416,333 - -0.9 4,416,333 - +2.0 4,416,391 - +1.0 4,416,414 + -0.9 4,416,450 + +0.9 4,416,597 + HP15_4177 0.17 +0.7 4,416,613 - HP15_4177 0.17 +1.0 4,416,654 + HP15_4177 0.19 +0.7 4,416,711 + HP15_4177 0.22 -0.3 4,416,735 + HP15_4177 0.23 +2.2 4,416,737 + HP15_4177 0.24 +0.6 4,416,754 - HP15_4177 0.24 +0.0 4,416,769 - HP15_4177 0.25 +1.2 4,416,832 - HP15_4177 0.28 -0.3 4,416,838 + HP15_4177 0.29 -0.5 4,416,846 - HP15_4177 0.29 +0.7 4,416,872 + HP15_4177 0.30 -1.4
Or see this region's nucleotide sequence