Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3910 and HP15_3911 are separated by 95 nucleotides HP15_3911 and HP15_3912 are separated by 47 nucleotides HP15_3912 and HP15_3913 overlap by 37 nucleotides
HP15_3910: HP15_3910 - metal dependent phosphohydrolase, at 4,139,101 to 4,140,225
_3910
HP15_3911: HP15_3911 - hypothetical protein, at 4,140,321 to 4,140,455
_3911
HP15_3912: HP15_3912 - diguanylate cyclase, at 4,140,503 to 4,141,513
_3912
HP15_3913: HP15_3913 - multidrug resistance protein NorM, at 4,141,477 to 4,142,898
_3913
Position (kb)
4140
4141
4142 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 4139.517 kb on + strand, within HP15_3910 at 4139.526 kb on - strand, within HP15_3910 at 4139.648 kb on + strand, within HP15_3910 at 4139.675 kb on + strand, within HP15_3910 at 4139.675 kb on + strand, within HP15_3910 at 4139.683 kb on - strand, within HP15_3910 at 4139.838 kb on - strand, within HP15_3910 at 4139.843 kb on + strand, within HP15_3910 at 4139.865 kb on + strand, within HP15_3910 at 4139.865 kb on + strand, within HP15_3910 at 4139.880 kb on + strand, within HP15_3910 at 4139.893 kb on - strand, within HP15_3910 at 4139.977 kb on - strand, within HP15_3910 at 4139.988 kb on + strand, within HP15_3910 at 4139.991 kb on - strand, within HP15_3910 at 4140.138 kb on + strand at 4140.146 kb on - strand at 4140.164 kb on + strand at 4140.164 kb on + strand at 4140.172 kb on - strand at 4140.225 kb on + strand at 4140.225 kb on + strand at 4140.233 kb on - strand at 4140.243 kb on - strand at 4140.253 kb on - strand at 4140.299 kb on + strand at 4140.514 kb on + strand at 4140.558 kb on - strand at 4140.610 kb on - strand, within HP15_3912 at 4140.657 kb on + strand, within HP15_3912 at 4140.662 kb on + strand, within HP15_3912 at 4140.665 kb on - strand, within HP15_3912 at 4140.670 kb on - strand, within HP15_3912 at 4140.670 kb on - strand, within HP15_3912 at 4140.675 kb on - strand, within HP15_3912 at 4140.773 kb on - strand, within HP15_3912 at 4140.778 kb on - strand, within HP15_3912 at 4140.788 kb on - strand, within HP15_3912 at 4140.901 kb on - strand, within HP15_3912 at 4141.085 kb on + strand, within HP15_3912 at 4141.140 kb on - strand, within HP15_3912 at 4141.212 kb on + strand, within HP15_3912 at 4141.212 kb on + strand, within HP15_3912 at 4141.220 kb on - strand, within HP15_3912 at 4141.220 kb on - strand, within HP15_3912 at 4141.313 kb on + strand, within HP15_3912 at 4141.373 kb on - strand, within HP15_3912 at 4141.435 kb on - strand at 4141.448 kb on + strand at 4141.475 kb on + strand at 4141.567 kb on + strand at 4141.567 kb on + strand at 4141.636 kb on + strand, within HP15_3913 at 4141.643 kb on + strand, within HP15_3913 at 4141.648 kb on + strand, within HP15_3913 at 4141.648 kb on + strand, within HP15_3913 at 4141.649 kb on - strand, within HP15_3913 at 4141.649 kb on - strand, within HP15_3913 at 4141.780 kb on + strand, within HP15_3913 at 4141.788 kb on - strand, within HP15_3913 at 4141.796 kb on + strand, within HP15_3913 at 4141.806 kb on + strand, within HP15_3913 at 4141.822 kb on + strand, within HP15_3913 at 4141.828 kb on - strand, within HP15_3913 at 4141.830 kb on - strand, within HP15_3913 at 4142.364 kb on - strand, within HP15_3913 at 4142.387 kb on - strand, within HP15_3913 at 4142.478 kb on - strand, within HP15_3913 at 4142.489 kb on + strand, within HP15_3913 at 4142.497 kb on - strand, within HP15_3913 at 4142.503 kb on - strand, within HP15_3913
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 4,139,517 + HP15_3910 0.37 -1.7 4,139,526 - HP15_3910 0.38 +0.3 4,139,648 + HP15_3910 0.49 -1.4 4,139,675 + HP15_3910 0.51 +0.2 4,139,675 + HP15_3910 0.51 +1.0 4,139,683 - HP15_3910 0.52 +0.1 4,139,838 - HP15_3910 0.66 +0.9 4,139,843 + HP15_3910 0.66 -0.1 4,139,865 + HP15_3910 0.68 -0.3 4,139,865 + HP15_3910 0.68 -0.2 4,139,880 + HP15_3910 0.69 +0.3 4,139,893 - HP15_3910 0.70 -1.3 4,139,977 - HP15_3910 0.78 -0.4 4,139,988 + HP15_3910 0.79 +0.0 4,139,991 - HP15_3910 0.79 -1.5 4,140,138 + -5.2 4,140,146 - -1.6 4,140,164 + +0.0 4,140,164 + -1.5 4,140,172 - -1.2 4,140,225 + -1.0 4,140,225 + -1.0 4,140,233 - -0.1 4,140,243 - +0.5 4,140,253 - -0.6 4,140,299 + -0.5 4,140,514 + -1.6 4,140,558 - +0.4 4,140,610 - HP15_3912 0.11 +0.3 4,140,657 + HP15_3912 0.15 -0.3 4,140,662 + HP15_3912 0.16 +0.8 4,140,665 - HP15_3912 0.16 +1.0 4,140,670 - HP15_3912 0.17 +0.6 4,140,670 - HP15_3912 0.17 -0.7 4,140,675 - HP15_3912 0.17 +0.2 4,140,773 - HP15_3912 0.27 +0.5 4,140,778 - HP15_3912 0.27 +0.4 4,140,788 - HP15_3912 0.28 +1.6 4,140,901 - HP15_3912 0.39 +0.1 4,141,085 + HP15_3912 0.58 +0.3 4,141,140 - HP15_3912 0.63 +0.0 4,141,212 + HP15_3912 0.70 +0.1 4,141,212 + HP15_3912 0.70 +0.3 4,141,220 - HP15_3912 0.71 +0.3 4,141,220 - HP15_3912 0.71 +0.8 4,141,313 + HP15_3912 0.80 -0.2 4,141,373 - HP15_3912 0.86 +1.0 4,141,435 - +1.6 4,141,448 + -0.2 4,141,475 + -0.8 4,141,567 + -1.0 4,141,567 + +0.4 4,141,636 + HP15_3913 0.11 +0.2 4,141,643 + HP15_3913 0.12 -0.8 4,141,648 + HP15_3913 0.12 +0.1 4,141,648 + HP15_3913 0.12 -1.0 4,141,649 - HP15_3913 0.12 +0.1 4,141,649 - HP15_3913 0.12 +0.4 4,141,780 + HP15_3913 0.21 -0.8 4,141,788 - HP15_3913 0.22 +0.7 4,141,796 + HP15_3913 0.22 +0.6 4,141,806 + HP15_3913 0.23 +0.6 4,141,822 + HP15_3913 0.24 +0.4 4,141,828 - HP15_3913 0.25 +0.6 4,141,830 - HP15_3913 0.25 +0.5 4,142,364 - HP15_3913 0.62 +1.1 4,142,387 - HP15_3913 0.64 -0.2 4,142,478 - HP15_3913 0.70 +0.8 4,142,489 + HP15_3913 0.71 +0.4 4,142,497 - HP15_3913 0.72 +0.2 4,142,503 - HP15_3913 0.72 -0.1
Or see this region's nucleotide sequence