Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3901 and HP15_3902 are separated by 133 nucleotides HP15_3902 and HP15_3903 are separated by 9 nucleotides HP15_3903 and HP15_3904 overlap by 1 nucleotides
HP15_3901: HP15_3901 - signal transduction protein, at 4,131,108 to 4,132,529
_3901
HP15_3902: HP15_3902 - hypothetical protein, at 4,132,663 to 4,132,806
_3902
HP15_3903: HP15_3903 - methionine import ATP-binding protein MetN 2, at 4,132,816 to 4,133,748
_3903
HP15_3904: HP15_3904 - binding-protein-dependent transport systems inner membrane component, at 4,133,748 to 4,134,413
_3904
Position (kb) 4132
4133 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4131.697 kb on + strand, within HP15_3901 at 4131.704 kb on + strand, within HP15_3901 at 4131.726 kb on - strand, within HP15_3901 at 4131.782 kb on - strand, within HP15_3901 at 4131.802 kb on + strand, within HP15_3901 at 4131.802 kb on + strand, within HP15_3901 at 4131.810 kb on - strand, within HP15_3901 at 4131.812 kb on + strand, within HP15_3901 at 4131.860 kb on - strand, within HP15_3901 at 4131.923 kb on + strand, within HP15_3901 at 4131.965 kb on - strand, within HP15_3901 at 4132.036 kb on - strand, within HP15_3901 at 4132.178 kb on - strand, within HP15_3901 at 4132.203 kb on - strand, within HP15_3901 at 4132.262 kb on + strand, within HP15_3901 at 4132.262 kb on + strand, within HP15_3901 at 4132.270 kb on - strand, within HP15_3901 at 4132.270 kb on - strand, within HP15_3901 at 4132.282 kb on + strand, within HP15_3901 at 4132.318 kb on + strand, within HP15_3901 at 4132.318 kb on + strand, within HP15_3901 at 4132.318 kb on + strand, within HP15_3901 at 4132.318 kb on + strand, within HP15_3901 at 4132.318 kb on + strand, within HP15_3901 at 4132.326 kb on - strand, within HP15_3901 at 4132.345 kb on - strand, within HP15_3901 at 4132.350 kb on - strand, within HP15_3901 at 4132.372 kb on - strand, within HP15_3901 at 4132.425 kb on + strand at 4132.532 kb on - strand at 4132.539 kb on + strand at 4132.614 kb on - strand at 4132.716 kb on + strand, within HP15_3902 at 4132.719 kb on - strand, within HP15_3902 at 4132.919 kb on + strand, within HP15_3903 at 4132.963 kb on + strand, within HP15_3903 at 4133.010 kb on + strand, within HP15_3903 at 4133.017 kb on - strand, within HP15_3903 at 4133.400 kb on + strand, within HP15_3903 at 4133.409 kb on - strand, within HP15_3903 at 4133.480 kb on + strand, within HP15_3903 at 4133.514 kb on - strand, within HP15_3903 at 4133.544 kb on - strand, within HP15_3903 at 4133.569 kb on - strand, within HP15_3903 at 4133.637 kb on + strand, within HP15_3903 at 4133.687 kb on + strand at 4133.717 kb on - strand at 4133.737 kb on + strand at 4133.745 kb on - strand at 4133.757 kb on + strand at 4133.800 kb on + strand at 4133.805 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 4,131,697 + HP15_3901 0.41 +0.2 4,131,704 + HP15_3901 0.42 +2.4 4,131,726 - HP15_3901 0.43 -0.7 4,131,782 - HP15_3901 0.47 -0.7 4,131,802 + HP15_3901 0.49 +0.4 4,131,802 + HP15_3901 0.49 +1.5 4,131,810 - HP15_3901 0.49 -0.4 4,131,812 + HP15_3901 0.50 +1.0 4,131,860 - HP15_3901 0.53 +0.3 4,131,923 + HP15_3901 0.57 +0.7 4,131,965 - HP15_3901 0.60 -0.2 4,132,036 - HP15_3901 0.65 +0.9 4,132,178 - HP15_3901 0.75 -1.2 4,132,203 - HP15_3901 0.77 -2.2 4,132,262 + HP15_3901 0.81 -0.5 4,132,262 + HP15_3901 0.81 +0.2 4,132,270 - HP15_3901 0.82 +0.0 4,132,270 - HP15_3901 0.82 +0.7 4,132,282 + HP15_3901 0.83 -3.4 4,132,318 + HP15_3901 0.85 -0.0 4,132,318 + HP15_3901 0.85 +0.1 4,132,318 + HP15_3901 0.85 +0.3 4,132,318 + HP15_3901 0.85 +1.0 4,132,318 + HP15_3901 0.85 -3.2 4,132,326 - HP15_3901 0.86 -0.7 4,132,345 - HP15_3901 0.87 -2.3 4,132,350 - HP15_3901 0.87 +0.0 4,132,372 - HP15_3901 0.89 -2.1 4,132,425 + +0.6 4,132,532 - +1.1 4,132,539 + -0.4 4,132,614 - -0.8 4,132,716 + HP15_3902 0.37 -1.8 4,132,719 - HP15_3902 0.39 -1.5 4,132,919 + HP15_3903 0.11 -1.5 4,132,963 + HP15_3903 0.16 -1.8 4,133,010 + HP15_3903 0.21 -1.2 4,133,017 - HP15_3903 0.22 -3.1 4,133,400 + HP15_3903 0.63 -3.0 4,133,409 - HP15_3903 0.64 -2.9 4,133,480 + HP15_3903 0.71 +0.1 4,133,514 - HP15_3903 0.75 -1.5 4,133,544 - HP15_3903 0.78 -3.8 4,133,569 - HP15_3903 0.81 -1.4 4,133,637 + HP15_3903 0.88 -2.1 4,133,687 + -1.5 4,133,717 - -1.4 4,133,737 + -0.1 4,133,745 - -1.2 4,133,757 + -0.8 4,133,800 + -1.5 4,133,805 + -0.7
Or see this region's nucleotide sequence