Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3818 and HP15_3819 are separated by 9 nucleotides HP15_3819 and HP15_3820 are separated by 232 nucleotides
HP15_3818: HP15_3818 - extracellular nuclease, at 4,043,181 to 4,044,941
_3818
HP15_3819: HP15_3819 - transcriptional regulator, DeoR, predicted, at 4,044,951 to 4,045,892
_3819
HP15_3820: HP15_3820 - major facilitator superfamily MFS_1, at 4,046,125 to 4,047,408
_3820
Position (kb)
4044
4045
4046 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4043.958 kb on + strand, within HP15_3818 at 4043.966 kb on - strand, within HP15_3818 at 4044.082 kb on + strand, within HP15_3818 at 4044.158 kb on + strand, within HP15_3818 at 4044.158 kb on + strand, within HP15_3818 at 4044.273 kb on - strand, within HP15_3818 at 4044.289 kb on + strand, within HP15_3818 at 4044.297 kb on - strand, within HP15_3818 at 4044.392 kb on + strand, within HP15_3818 at 4044.480 kb on - strand, within HP15_3818 at 4044.550 kb on - strand, within HP15_3818 at 4044.564 kb on + strand, within HP15_3818 at 4044.572 kb on - strand, within HP15_3818 at 4044.801 kb on + strand at 4044.815 kb on - strand at 4044.941 kb on + strand at 4044.970 kb on + strand at 4045.131 kb on + strand, within HP15_3819 at 4045.382 kb on - strand, within HP15_3819 at 4045.606 kb on + strand, within HP15_3819 at 4045.774 kb on + strand, within HP15_3819 at 4045.917 kb on - strand at 4046.009 kb on + strand at 4046.029 kb on + strand at 4046.037 kb on - strand at 4046.056 kb on + strand at 4046.056 kb on + strand at 4046.117 kb on - strand at 4046.117 kb on - strand at 4046.141 kb on + strand at 4046.178 kb on + strand at 4046.186 kb on - strand at 4046.213 kb on + strand at 4046.268 kb on + strand, within HP15_3820 at 4046.299 kb on - strand, within HP15_3820 at 4046.306 kb on - strand, within HP15_3820 at 4046.350 kb on + strand, within HP15_3820 at 4046.382 kb on + strand, within HP15_3820 at 4046.670 kb on + strand, within HP15_3820 at 4046.688 kb on - strand, within HP15_3820 at 4046.748 kb on + strand, within HP15_3820 at 4046.803 kb on - strand, within HP15_3820 at 4046.803 kb on - strand, within HP15_3820 at 4046.816 kb on + strand, within HP15_3820
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 4,043,958 + HP15_3818 0.44 +0.1 4,043,966 - HP15_3818 0.45 +0.6 4,044,082 + HP15_3818 0.51 +0.8 4,044,158 + HP15_3818 0.55 -0.2 4,044,158 + HP15_3818 0.55 +0.9 4,044,273 - HP15_3818 0.62 -0.2 4,044,289 + HP15_3818 0.63 +0.4 4,044,297 - HP15_3818 0.63 +0.1 4,044,392 + HP15_3818 0.69 +0.2 4,044,480 - HP15_3818 0.74 -0.2 4,044,550 - HP15_3818 0.78 +0.5 4,044,564 + HP15_3818 0.79 -0.7 4,044,572 - HP15_3818 0.79 -0.5 4,044,801 + +0.3 4,044,815 - -0.0 4,044,941 + -0.2 4,044,970 + -0.3 4,045,131 + HP15_3819 0.19 -1.4 4,045,382 - HP15_3819 0.46 +0.4 4,045,606 + HP15_3819 0.70 -1.5 4,045,774 + HP15_3819 0.87 -0.8 4,045,917 - +0.1 4,046,009 + +0.3 4,046,029 + -0.4 4,046,037 - +1.4 4,046,056 + +0.4 4,046,056 + -0.2 4,046,117 - +2.2 4,046,117 - +2.5 4,046,141 + +2.9 4,046,178 + +2.3 4,046,186 - +2.6 4,046,213 + +1.8 4,046,268 + HP15_3820 0.11 +2.9 4,046,299 - HP15_3820 0.14 +2.7 4,046,306 - HP15_3820 0.14 +2.7 4,046,350 + HP15_3820 0.18 +2.7 4,046,382 + HP15_3820 0.20 +3.4 4,046,670 + HP15_3820 0.42 +3.0 4,046,688 - HP15_3820 0.44 +3.0 4,046,748 + HP15_3820 0.49 +3.6 4,046,803 - HP15_3820 0.53 +2.9 4,046,803 - HP15_3820 0.53 +3.2 4,046,816 + HP15_3820 0.54 +2.7
Or see this region's nucleotide sequence