Strain Fitness in Marinobacter adhaerens HP15 around HP15_3819

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3818 and HP15_3819 are separated by 9 nucleotidesHP15_3819 and HP15_3820 are separated by 232 nucleotides HP15_3818: HP15_3818 - extracellular nuclease, at 4,043,181 to 4,044,941 _3818 HP15_3819: HP15_3819 - transcriptional regulator, DeoR, predicted, at 4,044,951 to 4,045,892 _3819 HP15_3820: HP15_3820 - major facilitator superfamily MFS_1, at 4,046,125 to 4,047,408 _3820 Position (kb) 4044 4045 4046Strain fitness (log2 ratio) -1 0 1 2 3at 4043.958 kb on + strand, within HP15_3818at 4043.966 kb on - strand, within HP15_3818at 4044.082 kb on + strand, within HP15_3818at 4044.158 kb on + strand, within HP15_3818at 4044.158 kb on + strand, within HP15_3818at 4044.273 kb on - strand, within HP15_3818at 4044.289 kb on + strand, within HP15_3818at 4044.297 kb on - strand, within HP15_3818at 4044.392 kb on + strand, within HP15_3818at 4044.480 kb on - strand, within HP15_3818at 4044.550 kb on - strand, within HP15_3818at 4044.564 kb on + strand, within HP15_3818at 4044.572 kb on - strand, within HP15_3818at 4044.801 kb on + strandat 4044.815 kb on - strandat 4044.941 kb on + strandat 4044.970 kb on + strandat 4045.131 kb on + strand, within HP15_3819at 4045.382 kb on - strand, within HP15_3819at 4045.606 kb on + strand, within HP15_3819at 4045.774 kb on + strand, within HP15_3819at 4045.917 kb on - strandat 4046.009 kb on + strandat 4046.029 kb on + strandat 4046.037 kb on - strandat 4046.056 kb on + strandat 4046.056 kb on + strandat 4046.117 kb on - strandat 4046.117 kb on - strandat 4046.141 kb on + strandat 4046.178 kb on + strandat 4046.186 kb on - strandat 4046.213 kb on + strandat 4046.268 kb on + strand, within HP15_3820at 4046.299 kb on - strand, within HP15_3820at 4046.306 kb on - strand, within HP15_3820at 4046.350 kb on + strand, within HP15_3820at 4046.382 kb on + strand, within HP15_3820at 4046.670 kb on + strand, within HP15_3820at 4046.688 kb on - strand, within HP15_3820at 4046.748 kb on + strand, within HP15_3820at 4046.803 kb on - strand, within HP15_3820at 4046.803 kb on - strand, within HP15_3820at 4046.816 kb on + strand, within HP15_3820

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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4,043,958 + HP15_3818 0.44 +0.1
4,043,966 - HP15_3818 0.45 +0.6
4,044,082 + HP15_3818 0.51 +0.8
4,044,158 + HP15_3818 0.55 -0.2
4,044,158 + HP15_3818 0.55 +0.9
4,044,273 - HP15_3818 0.62 -0.2
4,044,289 + HP15_3818 0.63 +0.4
4,044,297 - HP15_3818 0.63 +0.1
4,044,392 + HP15_3818 0.69 +0.2
4,044,480 - HP15_3818 0.74 -0.2
4,044,550 - HP15_3818 0.78 +0.5
4,044,564 + HP15_3818 0.79 -0.7
4,044,572 - HP15_3818 0.79 -0.5
4,044,801 + +0.3
4,044,815 - -0.0
4,044,941 + -0.2
4,044,970 + -0.3
4,045,131 + HP15_3819 0.19 -1.4
4,045,382 - HP15_3819 0.46 +0.4
4,045,606 + HP15_3819 0.70 -1.5
4,045,774 + HP15_3819 0.87 -0.8
4,045,917 - +0.1
4,046,009 + +0.3
4,046,029 + -0.4
4,046,037 - +1.4
4,046,056 + +0.4
4,046,056 + -0.2
4,046,117 - +2.2
4,046,117 - +2.5
4,046,141 + +2.9
4,046,178 + +2.3
4,046,186 - +2.6
4,046,213 + +1.8
4,046,268 + HP15_3820 0.11 +2.9
4,046,299 - HP15_3820 0.14 +2.7
4,046,306 - HP15_3820 0.14 +2.7
4,046,350 + HP15_3820 0.18 +2.7
4,046,382 + HP15_3820 0.20 +3.4
4,046,670 + HP15_3820 0.42 +3.0
4,046,688 - HP15_3820 0.44 +3.0
4,046,748 + HP15_3820 0.49 +3.6
4,046,803 - HP15_3820 0.53 +2.9
4,046,803 - HP15_3820 0.53 +3.2
4,046,816 + HP15_3820 0.54 +2.7

Or see this region's nucleotide sequence