Strain Fitness in Marinobacter adhaerens HP15 around HP15_3616

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3614 and HP15_3615 are separated by 1 nucleotidesHP15_3615 and HP15_3616 are separated by 156 nucleotidesHP15_3616 and HP15_3617 are separated by 116 nucleotidesHP15_3617 and HP15_3618 are separated by 24 nucleotides HP15_3614: HP15_3614 - histone deacetylase superfamily, at 3,810,676 to 3,811,710 _3614 HP15_3615: HP15_3615 - ribosomal RNA large subunit methyltransferase J, at 3,811,712 to 3,812,332 _3615 HP15_3616: HP15_3616 - tRNA/rRNA methyltransferase (SpoU), at 3,812,489 to 3,813,217 _3616 HP15_3617: HP15_3617 - protein containing transglutaminase-like domain, at 3,813,334 to 3,814,002 _3617 HP15_3618: HP15_3618 - periplasmic sugar-binding domain protein, at 3,814,027 to 3,815,181 _3618 Position (kb) 3812 3813 3814Strain fitness (log2 ratio) -3 -2 -1 0 1at 3811.681 kb on + strandat 3811.689 kb on - strandat 3811.705 kb on + strandat 3811.783 kb on + strand, within HP15_3615at 3811.793 kb on + strand, within HP15_3615at 3811.825 kb on + strand, within HP15_3615at 3811.923 kb on + strand, within HP15_3615at 3811.931 kb on - strand, within HP15_3615at 3811.946 kb on - strand, within HP15_3615at 3812.005 kb on + strand, within HP15_3615at 3812.013 kb on - strand, within HP15_3615at 3812.017 kb on - strand, within HP15_3615at 3812.093 kb on + strand, within HP15_3615at 3812.100 kb on - strand, within HP15_3615at 3812.166 kb on - strand, within HP15_3615at 3812.190 kb on + strand, within HP15_3615at 3812.227 kb on + strand, within HP15_3615at 3812.261 kb on - strand, within HP15_3615at 3812.304 kb on - strandat 3812.378 kb on + strandat 3812.574 kb on + strand, within HP15_3616at 3812.665 kb on + strand, within HP15_3616at 3812.673 kb on - strand, within HP15_3616at 3812.750 kb on + strand, within HP15_3616at 3812.807 kb on + strand, within HP15_3616at 3812.815 kb on - strand, within HP15_3616at 3812.815 kb on - strand, within HP15_3616at 3812.826 kb on - strand, within HP15_3616at 3812.852 kb on - strand, within HP15_3616at 3812.862 kb on - strand, within HP15_3616at 3812.887 kb on - strand, within HP15_3616at 3812.889 kb on + strand, within HP15_3616at 3812.897 kb on - strand, within HP15_3616at 3812.897 kb on - strand, within HP15_3616at 3812.897 kb on - strand, within HP15_3616at 3812.914 kb on + strand, within HP15_3616at 3813.058 kb on - strand, within HP15_3616at 3813.063 kb on - strand, within HP15_3616at 3813.065 kb on - strand, within HP15_3616at 3813.124 kb on + strand, within HP15_3616at 3813.130 kb on - strand, within HP15_3616at 3813.159 kb on + strandat 3813.159 kb on - strandat 3813.211 kb on + strandat 3813.219 kb on - strandat 3813.335 kb on - strandat 3813.354 kb on - strandat 3813.401 kb on + strand, within HP15_3617at 3813.401 kb on + strand, within HP15_3617at 3813.401 kb on + strand, within HP15_3617at 3813.409 kb on - strand, within HP15_3617at 3813.730 kb on - strand, within HP15_3617at 3813.822 kb on + strand, within HP15_3617at 3813.937 kb on - strandat 3813.964 kb on + strandat 3813.982 kb on - strandat 3813.998 kb on + strandat 3814.006 kb on - strandat 3814.032 kb on - strandat 3814.047 kb on + strandat 3814.047 kb on + strandat 3814.052 kb on + strandat 3814.055 kb on - strandat 3814.055 kb on - strandat 3814.129 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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3,811,681 + +0.6
3,811,689 - +1.6
3,811,705 + +0.0
3,811,783 + HP15_3615 0.11 -1.6
3,811,793 + HP15_3615 0.13 +1.3
3,811,825 + HP15_3615 0.18 +0.6
3,811,923 + HP15_3615 0.34 +0.5
3,811,931 - HP15_3615 0.35 -0.9
3,811,946 - HP15_3615 0.38 +0.2
3,812,005 + HP15_3615 0.47 +0.1
3,812,013 - HP15_3615 0.48 +0.6
3,812,017 - HP15_3615 0.49 +1.0
3,812,093 + HP15_3615 0.61 -1.1
3,812,100 - HP15_3615 0.62 -0.8
3,812,166 - HP15_3615 0.73 -0.8
3,812,190 + HP15_3615 0.77 -1.7
3,812,227 + HP15_3615 0.83 -0.7
3,812,261 - HP15_3615 0.88 +0.6
3,812,304 - -0.0
3,812,378 + +0.4
3,812,574 + HP15_3616 0.12 -0.9
3,812,665 + HP15_3616 0.24 -0.5
3,812,673 - HP15_3616 0.25 -0.2
3,812,750 + HP15_3616 0.36 +0.1
3,812,807 + HP15_3616 0.44 -0.8
3,812,815 - HP15_3616 0.45 -2.8
3,812,815 - HP15_3616 0.45 -0.8
3,812,826 - HP15_3616 0.46 -0.4
3,812,852 - HP15_3616 0.50 -0.3
3,812,862 - HP15_3616 0.51 -1.1
3,812,887 - HP15_3616 0.55 -0.6
3,812,889 + HP15_3616 0.55 -2.6
3,812,897 - HP15_3616 0.56 -0.3
3,812,897 - HP15_3616 0.56 -0.5
3,812,897 - HP15_3616 0.56 -0.2
3,812,914 + HP15_3616 0.58 -0.3
3,813,058 - HP15_3616 0.78 -2.2
3,813,063 - HP15_3616 0.79 +0.3
3,813,065 - HP15_3616 0.79 -1.1
3,813,124 + HP15_3616 0.87 -1.8
3,813,130 - HP15_3616 0.88 -1.1
3,813,159 + -2.0
3,813,159 - +0.3
3,813,211 + +0.7
3,813,219 - +0.2
3,813,335 - +0.2
3,813,354 - -1.1
3,813,401 + HP15_3617 0.10 -0.2
3,813,401 + HP15_3617 0.10 -2.0
3,813,401 + HP15_3617 0.10 -0.1
3,813,409 - HP15_3617 0.11 +1.3
3,813,730 - HP15_3617 0.59 +0.7
3,813,822 + HP15_3617 0.73 +0.1
3,813,937 - -0.1
3,813,964 + -1.5
3,813,982 - -1.5
3,813,998 + +0.9
3,814,006 - +0.5
3,814,032 - -0.9
3,814,047 + -0.6
3,814,047 + -0.8
3,814,052 + -0.6
3,814,055 - -0.8
3,814,055 - -0.0
3,814,129 - +0.6

Or see this region's nucleotide sequence