Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3614 and HP15_3615 are separated by 1 nucleotides HP15_3615 and HP15_3616 are separated by 156 nucleotides HP15_3616 and HP15_3617 are separated by 116 nucleotides HP15_3617 and HP15_3618 are separated by 24 nucleotides
HP15_3614: HP15_3614 - histone deacetylase superfamily, at 3,810,676 to 3,811,710
_3614
HP15_3615: HP15_3615 - ribosomal RNA large subunit methyltransferase J, at 3,811,712 to 3,812,332
_3615
HP15_3616: HP15_3616 - tRNA/rRNA methyltransferase (SpoU), at 3,812,489 to 3,813,217
_3616
HP15_3617: HP15_3617 - protein containing transglutaminase-like domain, at 3,813,334 to 3,814,002
_3617
HP15_3618: HP15_3618 - periplasmic sugar-binding domain protein, at 3,814,027 to 3,815,181
_3618
Position (kb)
3812
3813
3814 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3811.681 kb on + strand at 3811.689 kb on - strand at 3811.705 kb on + strand at 3811.783 kb on + strand, within HP15_3615 at 3811.793 kb on + strand, within HP15_3615 at 3811.825 kb on + strand, within HP15_3615 at 3811.923 kb on + strand, within HP15_3615 at 3811.931 kb on - strand, within HP15_3615 at 3811.946 kb on - strand, within HP15_3615 at 3812.005 kb on + strand, within HP15_3615 at 3812.013 kb on - strand, within HP15_3615 at 3812.017 kb on - strand, within HP15_3615 at 3812.093 kb on + strand, within HP15_3615 at 3812.100 kb on - strand, within HP15_3615 at 3812.166 kb on - strand, within HP15_3615 at 3812.190 kb on + strand, within HP15_3615 at 3812.227 kb on + strand, within HP15_3615 at 3812.261 kb on - strand, within HP15_3615 at 3812.304 kb on - strand at 3812.378 kb on + strand at 3812.574 kb on + strand, within HP15_3616 at 3812.665 kb on + strand, within HP15_3616 at 3812.673 kb on - strand, within HP15_3616 at 3812.750 kb on + strand, within HP15_3616 at 3812.807 kb on + strand, within HP15_3616 at 3812.815 kb on - strand, within HP15_3616 at 3812.815 kb on - strand, within HP15_3616 at 3812.826 kb on - strand, within HP15_3616 at 3812.852 kb on - strand, within HP15_3616 at 3812.862 kb on - strand, within HP15_3616 at 3812.887 kb on - strand, within HP15_3616 at 3812.889 kb on + strand, within HP15_3616 at 3812.897 kb on - strand, within HP15_3616 at 3812.897 kb on - strand, within HP15_3616 at 3812.897 kb on - strand, within HP15_3616 at 3812.914 kb on + strand, within HP15_3616 at 3813.058 kb on - strand, within HP15_3616 at 3813.063 kb on - strand, within HP15_3616 at 3813.065 kb on - strand, within HP15_3616 at 3813.124 kb on + strand, within HP15_3616 at 3813.130 kb on - strand, within HP15_3616 at 3813.159 kb on + strand at 3813.159 kb on - strand at 3813.211 kb on + strand at 3813.219 kb on - strand at 3813.335 kb on - strand at 3813.354 kb on - strand at 3813.401 kb on + strand, within HP15_3617 at 3813.401 kb on + strand, within HP15_3617 at 3813.401 kb on + strand, within HP15_3617 at 3813.409 kb on - strand, within HP15_3617 at 3813.730 kb on - strand, within HP15_3617 at 3813.822 kb on + strand, within HP15_3617 at 3813.937 kb on - strand at 3813.964 kb on + strand at 3813.982 kb on - strand at 3813.998 kb on + strand at 3814.006 kb on - strand at 3814.032 kb on - strand at 3814.047 kb on + strand at 3814.047 kb on + strand at 3814.052 kb on + strand at 3814.055 kb on - strand at 3814.055 kb on - strand at 3814.129 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 3,811,681 + +0.6 3,811,689 - +1.6 3,811,705 + +0.0 3,811,783 + HP15_3615 0.11 -1.6 3,811,793 + HP15_3615 0.13 +1.3 3,811,825 + HP15_3615 0.18 +0.6 3,811,923 + HP15_3615 0.34 +0.5 3,811,931 - HP15_3615 0.35 -0.9 3,811,946 - HP15_3615 0.38 +0.2 3,812,005 + HP15_3615 0.47 +0.1 3,812,013 - HP15_3615 0.48 +0.6 3,812,017 - HP15_3615 0.49 +1.0 3,812,093 + HP15_3615 0.61 -1.1 3,812,100 - HP15_3615 0.62 -0.8 3,812,166 - HP15_3615 0.73 -0.8 3,812,190 + HP15_3615 0.77 -1.7 3,812,227 + HP15_3615 0.83 -0.7 3,812,261 - HP15_3615 0.88 +0.6 3,812,304 - -0.0 3,812,378 + +0.4 3,812,574 + HP15_3616 0.12 -0.9 3,812,665 + HP15_3616 0.24 -0.5 3,812,673 - HP15_3616 0.25 -0.2 3,812,750 + HP15_3616 0.36 +0.1 3,812,807 + HP15_3616 0.44 -0.8 3,812,815 - HP15_3616 0.45 -2.8 3,812,815 - HP15_3616 0.45 -0.8 3,812,826 - HP15_3616 0.46 -0.4 3,812,852 - HP15_3616 0.50 -0.3 3,812,862 - HP15_3616 0.51 -1.1 3,812,887 - HP15_3616 0.55 -0.6 3,812,889 + HP15_3616 0.55 -2.6 3,812,897 - HP15_3616 0.56 -0.3 3,812,897 - HP15_3616 0.56 -0.5 3,812,897 - HP15_3616 0.56 -0.2 3,812,914 + HP15_3616 0.58 -0.3 3,813,058 - HP15_3616 0.78 -2.2 3,813,063 - HP15_3616 0.79 +0.3 3,813,065 - HP15_3616 0.79 -1.1 3,813,124 + HP15_3616 0.87 -1.8 3,813,130 - HP15_3616 0.88 -1.1 3,813,159 + -2.0 3,813,159 - +0.3 3,813,211 + +0.7 3,813,219 - +0.2 3,813,335 - +0.2 3,813,354 - -1.1 3,813,401 + HP15_3617 0.10 -0.2 3,813,401 + HP15_3617 0.10 -2.0 3,813,401 + HP15_3617 0.10 -0.1 3,813,409 - HP15_3617 0.11 +1.3 3,813,730 - HP15_3617 0.59 +0.7 3,813,822 + HP15_3617 0.73 +0.1 3,813,937 - -0.1 3,813,964 + -1.5 3,813,982 - -1.5 3,813,998 + +0.9 3,814,006 - +0.5 3,814,032 - -0.9 3,814,047 + -0.6 3,814,047 + -0.8 3,814,052 + -0.6 3,814,055 - -0.8 3,814,055 - -0.0 3,814,129 - +0.6
Or see this region's nucleotide sequence