Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3602 and HP15_3603 are separated by 89 nucleotides HP15_3603 and HP15_3604 are separated by 161 nucleotides
HP15_3602: HP15_3602 - NADH-dependent flavin oxidoreductase, Oye family protein, at 3,797,436 to 3,798,548
_3602
HP15_3603: HP15_3603 - transcriptional regulator, HxlR family, at 3,798,638 to 3,799,108
_3603
HP15_3604: HP15_3604 - outer membrane protein OmpW, at 3,799,270 to 3,799,998
_3604
Position (kb)
3798
3799
3800 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3797.665 kb on - strand, within HP15_3602 at 3797.697 kb on + strand, within HP15_3602 at 3797.697 kb on + strand, within HP15_3602 at 3797.704 kb on - strand, within HP15_3602 at 3797.718 kb on + strand, within HP15_3602 at 3797.718 kb on + strand, within HP15_3602 at 3797.718 kb on + strand, within HP15_3602 at 3797.726 kb on - strand, within HP15_3602 at 3797.726 kb on - strand, within HP15_3602 at 3797.830 kb on - strand, within HP15_3602 at 3797.895 kb on + strand, within HP15_3602 at 3797.895 kb on + strand, within HP15_3602 at 3797.903 kb on - strand, within HP15_3602 at 3797.907 kb on - strand, within HP15_3602 at 3797.962 kb on - strand, within HP15_3602 at 3797.965 kb on + strand, within HP15_3602 at 3797.967 kb on + strand, within HP15_3602 at 3797.987 kb on + strand, within HP15_3602 at 3797.995 kb on - strand, within HP15_3602 at 3798.162 kb on + strand, within HP15_3602 at 3798.182 kb on + strand, within HP15_3602 at 3798.237 kb on - strand, within HP15_3602 at 3798.494 kb on + strand at 3798.494 kb on - strand at 3798.562 kb on - strand at 3798.770 kb on + strand, within HP15_3603 at 3798.825 kb on + strand, within HP15_3603 at 3798.835 kb on + strand, within HP15_3603 at 3798.840 kb on + strand, within HP15_3603 at 3798.842 kb on + strand, within HP15_3603 at 3798.843 kb on - strand, within HP15_3603 at 3798.951 kb on - strand, within HP15_3603 at 3799.034 kb on + strand, within HP15_3603 at 3799.035 kb on + strand, within HP15_3603 at 3799.039 kb on + strand, within HP15_3603 at 3799.045 kb on + strand, within HP15_3603 at 3799.171 kb on + strand at 3799.179 kb on - strand at 3799.267 kb on - strand at 3799.268 kb on - strand at 3799.336 kb on + strand at 3799.336 kb on + strand at 3799.342 kb on - strand at 3799.493 kb on + strand, within HP15_3604 at 3799.493 kb on + strand, within HP15_3604 at 3799.501 kb on - strand, within HP15_3604 at 3799.532 kb on + strand, within HP15_3604 at 3799.573 kb on + strand, within HP15_3604 at 3799.573 kb on + strand, within HP15_3604 at 3799.573 kb on + strand, within HP15_3604 at 3799.578 kb on + strand, within HP15_3604 at 3799.581 kb on - strand, within HP15_3604 at 3799.581 kb on - strand, within HP15_3604 at 3799.581 kb on - strand, within HP15_3604 at 3799.581 kb on - strand, within HP15_3604 at 3799.620 kb on + strand, within HP15_3604 at 3799.630 kb on + strand, within HP15_3604 at 3799.638 kb on - strand, within HP15_3604 at 3799.692 kb on - strand, within HP15_3604 at 3799.737 kb on + strand, within HP15_3604 at 3799.769 kb on - strand, within HP15_3604 at 3799.807 kb on - strand, within HP15_3604 at 3799.887 kb on - strand, within HP15_3604 at 3799.966 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 3,797,665 - HP15_3602 0.21 +0.5 3,797,697 + HP15_3602 0.23 +1.1 3,797,697 + HP15_3602 0.23 +0.2 3,797,704 - HP15_3602 0.24 +0.1 3,797,718 + HP15_3602 0.25 +1.9 3,797,718 + HP15_3602 0.25 +0.3 3,797,718 + HP15_3602 0.25 +1.2 3,797,726 - HP15_3602 0.26 +0.6 3,797,726 - HP15_3602 0.26 -0.2 3,797,830 - HP15_3602 0.35 +0.2 3,797,895 + HP15_3602 0.41 -0.3 3,797,895 + HP15_3602 0.41 -0.6 3,797,903 - HP15_3602 0.42 +0.9 3,797,907 - HP15_3602 0.42 +2.0 3,797,962 - HP15_3602 0.47 +0.7 3,797,965 + HP15_3602 0.48 -0.0 3,797,967 + HP15_3602 0.48 +0.2 3,797,987 + HP15_3602 0.50 -0.1 3,797,995 - HP15_3602 0.50 +0.7 3,798,162 + HP15_3602 0.65 -1.6 3,798,182 + HP15_3602 0.67 -1.2 3,798,237 - HP15_3602 0.72 +0.8 3,798,494 + +0.7 3,798,494 - +0.6 3,798,562 - +0.8 3,798,770 + HP15_3603 0.28 +1.2 3,798,825 + HP15_3603 0.40 +1.8 3,798,835 + HP15_3603 0.42 +1.7 3,798,840 + HP15_3603 0.43 +2.2 3,798,842 + HP15_3603 0.43 +1.6 3,798,843 - HP15_3603 0.44 +1.4 3,798,951 - HP15_3603 0.66 +1.6 3,799,034 + HP15_3603 0.84 +1.5 3,799,035 + HP15_3603 0.84 +1.1 3,799,039 + HP15_3603 0.85 +1.7 3,799,045 + HP15_3603 0.86 +1.9 3,799,171 + +0.4 3,799,179 - -0.5 3,799,267 - +0.1 3,799,268 - -0.1 3,799,336 + -1.6 3,799,336 + +0.1 3,799,342 - +0.9 3,799,493 + HP15_3604 0.31 +0.8 3,799,493 + HP15_3604 0.31 -2.0 3,799,501 - HP15_3604 0.32 +0.4 3,799,532 + HP15_3604 0.36 +0.0 3,799,573 + HP15_3604 0.42 -0.8 3,799,573 + HP15_3604 0.42 +0.1 3,799,573 + HP15_3604 0.42 -0.8 3,799,578 + HP15_3604 0.42 -0.6 3,799,581 - HP15_3604 0.43 +0.5 3,799,581 - HP15_3604 0.43 +0.9 3,799,581 - HP15_3604 0.43 -1.2 3,799,581 - HP15_3604 0.43 -0.3 3,799,620 + HP15_3604 0.48 -1.0 3,799,630 + HP15_3604 0.49 +0.5 3,799,638 - HP15_3604 0.50 -0.0 3,799,692 - HP15_3604 0.58 +0.4 3,799,737 + HP15_3604 0.64 -0.5 3,799,769 - HP15_3604 0.68 +0.3 3,799,807 - HP15_3604 0.74 +0.4 3,799,887 - HP15_3604 0.85 -0.6 3,799,966 - +0.4
Or see this region's nucleotide sequence