Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3600 and HP15_3601 are separated by 30 nucleotides HP15_3601 and HP15_3602 are separated by 157 nucleotides HP15_3602 and HP15_3603 are separated by 89 nucleotides HP15_3603 and HP15_3604 are separated by 161 nucleotides
HP15_3600: HP15_3600 - NAD(P) transhydrogenase subunit beta, at 3,796,058 to 3,796,942
_3600
HP15_3601: HP15_3601 - conserved hypothetical protein, secreted, at 3,796,973 to 3,797,278
_3601
HP15_3602: HP15_3602 - NADH-dependent flavin oxidoreductase, Oye family protein, at 3,797,436 to 3,798,548
_3602
HP15_3603: HP15_3603 - transcriptional regulator, HxlR family, at 3,798,638 to 3,799,108
_3603
HP15_3604: HP15_3604 - outer membrane protein OmpW, at 3,799,270 to 3,799,998
_3604
Position (kb)
3797
3798
3799 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3796.439 kb on - strand, within HP15_3600 at 3796.446 kb on + strand, within HP15_3600 at 3796.446 kb on + strand, within HP15_3600 at 3796.454 kb on - strand, within HP15_3600 at 3796.565 kb on - strand, within HP15_3600 at 3796.605 kb on + strand, within HP15_3600 at 3796.725 kb on + strand, within HP15_3600 at 3796.796 kb on + strand, within HP15_3600 at 3796.802 kb on - strand, within HP15_3600 at 3796.843 kb on - strand, within HP15_3600 at 3796.888 kb on - strand at 3796.906 kb on - strand at 3796.938 kb on + strand at 3796.938 kb on + strand at 3796.943 kb on + strand at 3796.946 kb on - strand at 3796.983 kb on - strand at 3796.993 kb on - strand at 3797.015 kb on - strand, within HP15_3601 at 3797.054 kb on + strand, within HP15_3601 at 3797.077 kb on - strand, within HP15_3601 at 3797.093 kb on - strand, within HP15_3601 at 3797.135 kb on + strand, within HP15_3601 at 3797.222 kb on + strand, within HP15_3601 at 3797.222 kb on + strand, within HP15_3601 at 3797.320 kb on + strand at 3797.394 kb on - strand at 3797.396 kb on - strand at 3797.437 kb on - strand at 3797.476 kb on + strand at 3797.523 kb on + strand at 3797.523 kb on + strand at 3797.560 kb on - strand, within HP15_3602 at 3797.560 kb on - strand, within HP15_3602 at 3797.665 kb on - strand, within HP15_3602 at 3797.697 kb on + strand, within HP15_3602 at 3797.697 kb on + strand, within HP15_3602 at 3797.704 kb on - strand, within HP15_3602 at 3797.718 kb on + strand, within HP15_3602 at 3797.718 kb on + strand, within HP15_3602 at 3797.718 kb on + strand, within HP15_3602 at 3797.726 kb on - strand, within HP15_3602 at 3797.726 kb on - strand, within HP15_3602 at 3797.830 kb on - strand, within HP15_3602 at 3797.895 kb on + strand, within HP15_3602 at 3797.895 kb on + strand, within HP15_3602 at 3797.903 kb on - strand, within HP15_3602 at 3797.907 kb on - strand, within HP15_3602 at 3797.962 kb on - strand, within HP15_3602 at 3797.965 kb on + strand, within HP15_3602 at 3797.967 kb on + strand, within HP15_3602 at 3797.987 kb on + strand, within HP15_3602 at 3797.995 kb on - strand, within HP15_3602 at 3798.162 kb on + strand, within HP15_3602 at 3798.182 kb on + strand, within HP15_3602 at 3798.237 kb on - strand, within HP15_3602 at 3798.494 kb on + strand at 3798.494 kb on - strand at 3798.562 kb on - strand at 3798.770 kb on + strand, within HP15_3603 at 3798.825 kb on + strand, within HP15_3603 at 3798.835 kb on + strand, within HP15_3603 at 3798.840 kb on + strand, within HP15_3603 at 3798.842 kb on + strand, within HP15_3603 at 3798.843 kb on - strand, within HP15_3603 at 3798.951 kb on - strand, within HP15_3603 at 3799.034 kb on + strand, within HP15_3603 at 3799.035 kb on + strand, within HP15_3603 at 3799.039 kb on + strand, within HP15_3603 at 3799.045 kb on + strand, within HP15_3603 at 3799.171 kb on + strand at 3799.179 kb on - strand at 3799.267 kb on - strand at 3799.268 kb on - strand at 3799.336 kb on + strand at 3799.336 kb on + strand at 3799.342 kb on - strand at 3799.493 kb on + strand, within HP15_3604 at 3799.493 kb on + strand, within HP15_3604 at 3799.501 kb on - strand, within HP15_3604 at 3799.532 kb on + strand, within HP15_3604
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 3,796,439 - HP15_3600 0.43 +0.2 3,796,446 + HP15_3600 0.44 -0.8 3,796,446 + HP15_3600 0.44 -0.4 3,796,454 - HP15_3600 0.45 +0.4 3,796,565 - HP15_3600 0.57 -0.6 3,796,605 + HP15_3600 0.62 -0.2 3,796,725 + HP15_3600 0.75 +0.9 3,796,796 + HP15_3600 0.83 +0.2 3,796,802 - HP15_3600 0.84 -1.4 3,796,843 - HP15_3600 0.89 -0.8 3,796,888 - -0.0 3,796,906 - +1.2 3,796,938 + -0.4 3,796,938 + -2.4 3,796,943 + +0.4 3,796,946 - +1.8 3,796,983 - +0.3 3,796,993 - -0.0 3,797,015 - HP15_3601 0.14 +0.2 3,797,054 + HP15_3601 0.26 +2.8 3,797,077 - HP15_3601 0.34 -0.7 3,797,093 - HP15_3601 0.39 +1.3 3,797,135 + HP15_3601 0.53 -0.2 3,797,222 + HP15_3601 0.81 +1.0 3,797,222 + HP15_3601 0.81 +0.6 3,797,320 + +0.0 3,797,394 - +0.3 3,797,396 - -0.4 3,797,437 - -0.3 3,797,476 + +0.7 3,797,523 + -0.1 3,797,523 + +0.5 3,797,560 - HP15_3602 0.11 -0.9 3,797,560 - HP15_3602 0.11 +0.9 3,797,665 - HP15_3602 0.21 +0.5 3,797,697 + HP15_3602 0.23 +1.1 3,797,697 + HP15_3602 0.23 +0.2 3,797,704 - HP15_3602 0.24 +0.1 3,797,718 + HP15_3602 0.25 +1.9 3,797,718 + HP15_3602 0.25 +0.3 3,797,718 + HP15_3602 0.25 +1.2 3,797,726 - HP15_3602 0.26 +0.6 3,797,726 - HP15_3602 0.26 -0.2 3,797,830 - HP15_3602 0.35 +0.2 3,797,895 + HP15_3602 0.41 -0.3 3,797,895 + HP15_3602 0.41 -0.6 3,797,903 - HP15_3602 0.42 +0.9 3,797,907 - HP15_3602 0.42 +2.0 3,797,962 - HP15_3602 0.47 +0.7 3,797,965 + HP15_3602 0.48 -0.0 3,797,967 + HP15_3602 0.48 +0.2 3,797,987 + HP15_3602 0.50 -0.1 3,797,995 - HP15_3602 0.50 +0.7 3,798,162 + HP15_3602 0.65 -1.6 3,798,182 + HP15_3602 0.67 -1.2 3,798,237 - HP15_3602 0.72 +0.8 3,798,494 + +0.7 3,798,494 - +0.6 3,798,562 - +0.8 3,798,770 + HP15_3603 0.28 +1.2 3,798,825 + HP15_3603 0.40 +1.8 3,798,835 + HP15_3603 0.42 +1.7 3,798,840 + HP15_3603 0.43 +2.2 3,798,842 + HP15_3603 0.43 +1.6 3,798,843 - HP15_3603 0.44 +1.4 3,798,951 - HP15_3603 0.66 +1.6 3,799,034 + HP15_3603 0.84 +1.5 3,799,035 + HP15_3603 0.84 +1.1 3,799,039 + HP15_3603 0.85 +1.7 3,799,045 + HP15_3603 0.86 +1.9 3,799,171 + +0.4 3,799,179 - -0.5 3,799,267 - +0.1 3,799,268 - -0.1 3,799,336 + -1.6 3,799,336 + +0.1 3,799,342 - +0.9 3,799,493 + HP15_3604 0.31 +0.8 3,799,493 + HP15_3604 0.31 -2.0 3,799,501 - HP15_3604 0.32 +0.4 3,799,532 + HP15_3604 0.36 +0.0
Or see this region's nucleotide sequence