Strain Fitness in Marinobacter adhaerens HP15 around HP15_3602

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3600 and HP15_3601 are separated by 30 nucleotidesHP15_3601 and HP15_3602 are separated by 157 nucleotidesHP15_3602 and HP15_3603 are separated by 89 nucleotidesHP15_3603 and HP15_3604 are separated by 161 nucleotides HP15_3600: HP15_3600 - NAD(P) transhydrogenase subunit beta, at 3,796,058 to 3,796,942 _3600 HP15_3601: HP15_3601 - conserved hypothetical protein, secreted, at 3,796,973 to 3,797,278 _3601 HP15_3602: HP15_3602 - NADH-dependent flavin oxidoreductase, Oye family protein, at 3,797,436 to 3,798,548 _3602 HP15_3603: HP15_3603 - transcriptional regulator, HxlR family, at 3,798,638 to 3,799,108 _3603 HP15_3604: HP15_3604 - outer membrane protein OmpW, at 3,799,270 to 3,799,998 _3604 Position (kb) 3797 3798 3799Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3796.439 kb on - strand, within HP15_3600at 3796.446 kb on + strand, within HP15_3600at 3796.446 kb on + strand, within HP15_3600at 3796.454 kb on - strand, within HP15_3600at 3796.565 kb on - strand, within HP15_3600at 3796.605 kb on + strand, within HP15_3600at 3796.725 kb on + strand, within HP15_3600at 3796.796 kb on + strand, within HP15_3600at 3796.802 kb on - strand, within HP15_3600at 3796.843 kb on - strand, within HP15_3600at 3796.888 kb on - strandat 3796.906 kb on - strandat 3796.938 kb on + strandat 3796.938 kb on + strandat 3796.943 kb on + strandat 3796.946 kb on - strandat 3796.983 kb on - strandat 3796.993 kb on - strandat 3797.015 kb on - strand, within HP15_3601at 3797.054 kb on + strand, within HP15_3601at 3797.077 kb on - strand, within HP15_3601at 3797.093 kb on - strand, within HP15_3601at 3797.135 kb on + strand, within HP15_3601at 3797.222 kb on + strand, within HP15_3601at 3797.222 kb on + strand, within HP15_3601at 3797.320 kb on + strandat 3797.394 kb on - strandat 3797.396 kb on - strandat 3797.437 kb on - strandat 3797.476 kb on + strandat 3797.523 kb on + strandat 3797.523 kb on + strandat 3797.560 kb on - strand, within HP15_3602at 3797.560 kb on - strand, within HP15_3602at 3797.665 kb on - strand, within HP15_3602at 3797.697 kb on + strand, within HP15_3602at 3797.697 kb on + strand, within HP15_3602at 3797.704 kb on - strand, within HP15_3602at 3797.718 kb on + strand, within HP15_3602at 3797.718 kb on + strand, within HP15_3602at 3797.718 kb on + strand, within HP15_3602at 3797.726 kb on - strand, within HP15_3602at 3797.726 kb on - strand, within HP15_3602at 3797.830 kb on - strand, within HP15_3602at 3797.895 kb on + strand, within HP15_3602at 3797.895 kb on + strand, within HP15_3602at 3797.903 kb on - strand, within HP15_3602at 3797.907 kb on - strand, within HP15_3602at 3797.962 kb on - strand, within HP15_3602at 3797.965 kb on + strand, within HP15_3602at 3797.967 kb on + strand, within HP15_3602at 3797.987 kb on + strand, within HP15_3602at 3797.995 kb on - strand, within HP15_3602at 3798.162 kb on + strand, within HP15_3602at 3798.182 kb on + strand, within HP15_3602at 3798.237 kb on - strand, within HP15_3602at 3798.494 kb on + strandat 3798.494 kb on - strandat 3798.562 kb on - strandat 3798.770 kb on + strand, within HP15_3603at 3798.825 kb on + strand, within HP15_3603at 3798.835 kb on + strand, within HP15_3603at 3798.840 kb on + strand, within HP15_3603at 3798.842 kb on + strand, within HP15_3603at 3798.843 kb on - strand, within HP15_3603at 3798.951 kb on - strand, within HP15_3603at 3799.034 kb on + strand, within HP15_3603at 3799.035 kb on + strand, within HP15_3603at 3799.039 kb on + strand, within HP15_3603at 3799.045 kb on + strand, within HP15_3603at 3799.171 kb on + strandat 3799.179 kb on - strandat 3799.267 kb on - strandat 3799.268 kb on - strandat 3799.336 kb on + strandat 3799.336 kb on + strandat 3799.342 kb on - strandat 3799.493 kb on + strand, within HP15_3604at 3799.493 kb on + strand, within HP15_3604at 3799.501 kb on - strand, within HP15_3604at 3799.532 kb on + strand, within HP15_3604

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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3,796,439 - HP15_3600 0.43 +0.2
3,796,446 + HP15_3600 0.44 -0.8
3,796,446 + HP15_3600 0.44 -0.4
3,796,454 - HP15_3600 0.45 +0.4
3,796,565 - HP15_3600 0.57 -0.6
3,796,605 + HP15_3600 0.62 -0.2
3,796,725 + HP15_3600 0.75 +0.9
3,796,796 + HP15_3600 0.83 +0.2
3,796,802 - HP15_3600 0.84 -1.4
3,796,843 - HP15_3600 0.89 -0.8
3,796,888 - -0.0
3,796,906 - +1.2
3,796,938 + -0.4
3,796,938 + -2.4
3,796,943 + +0.4
3,796,946 - +1.8
3,796,983 - +0.3
3,796,993 - -0.0
3,797,015 - HP15_3601 0.14 +0.2
3,797,054 + HP15_3601 0.26 +2.8
3,797,077 - HP15_3601 0.34 -0.7
3,797,093 - HP15_3601 0.39 +1.3
3,797,135 + HP15_3601 0.53 -0.2
3,797,222 + HP15_3601 0.81 +1.0
3,797,222 + HP15_3601 0.81 +0.6
3,797,320 + +0.0
3,797,394 - +0.3
3,797,396 - -0.4
3,797,437 - -0.3
3,797,476 + +0.7
3,797,523 + -0.1
3,797,523 + +0.5
3,797,560 - HP15_3602 0.11 -0.9
3,797,560 - HP15_3602 0.11 +0.9
3,797,665 - HP15_3602 0.21 +0.5
3,797,697 + HP15_3602 0.23 +1.1
3,797,697 + HP15_3602 0.23 +0.2
3,797,704 - HP15_3602 0.24 +0.1
3,797,718 + HP15_3602 0.25 +1.9
3,797,718 + HP15_3602 0.25 +0.3
3,797,718 + HP15_3602 0.25 +1.2
3,797,726 - HP15_3602 0.26 +0.6
3,797,726 - HP15_3602 0.26 -0.2
3,797,830 - HP15_3602 0.35 +0.2
3,797,895 + HP15_3602 0.41 -0.3
3,797,895 + HP15_3602 0.41 -0.6
3,797,903 - HP15_3602 0.42 +0.9
3,797,907 - HP15_3602 0.42 +2.0
3,797,962 - HP15_3602 0.47 +0.7
3,797,965 + HP15_3602 0.48 -0.0
3,797,967 + HP15_3602 0.48 +0.2
3,797,987 + HP15_3602 0.50 -0.1
3,797,995 - HP15_3602 0.50 +0.7
3,798,162 + HP15_3602 0.65 -1.6
3,798,182 + HP15_3602 0.67 -1.2
3,798,237 - HP15_3602 0.72 +0.8
3,798,494 + +0.7
3,798,494 - +0.6
3,798,562 - +0.8
3,798,770 + HP15_3603 0.28 +1.2
3,798,825 + HP15_3603 0.40 +1.8
3,798,835 + HP15_3603 0.42 +1.7
3,798,840 + HP15_3603 0.43 +2.2
3,798,842 + HP15_3603 0.43 +1.6
3,798,843 - HP15_3603 0.44 +1.4
3,798,951 - HP15_3603 0.66 +1.6
3,799,034 + HP15_3603 0.84 +1.5
3,799,035 + HP15_3603 0.84 +1.1
3,799,039 + HP15_3603 0.85 +1.7
3,799,045 + HP15_3603 0.86 +1.9
3,799,171 + +0.4
3,799,179 - -0.5
3,799,267 - +0.1
3,799,268 - -0.1
3,799,336 + -1.6
3,799,336 + +0.1
3,799,342 - +0.9
3,799,493 + HP15_3604 0.31 +0.8
3,799,493 + HP15_3604 0.31 -2.0
3,799,501 - HP15_3604 0.32 +0.4
3,799,532 + HP15_3604 0.36 +0.0

Or see this region's nucleotide sequence