Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3463 and HP15_3464 are separated by 32 nucleotides HP15_3464 and HP15_3465 are separated by 16 nucleotides HP15_3465 and HP15_3466 are separated by 11 nucleotides
HP15_3463: HP15_3463 - type VI secretion protein IcmF, at 3,646,015 to 3,649,608
_3463
HP15_3464: HP15_3464 - ImpA domain protein, at 3,649,641 to 3,651,095
_3464
HP15_3465: HP15_3465 - type VI secretion system-associated, VCA0118, at 3,651,112 to 3,651,744
_3465
HP15_3466: HP15_3466 - two component, sigma54 specific, transcriptional regulator, Fis family, at 3,651,756 to 3,653,327
_3466
Position (kb)
3649
3650
3651
3652 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3648.687 kb on + strand, within HP15_3463 at 3648.715 kb on + strand, within HP15_3463 at 3648.722 kb on - strand, within HP15_3463 at 3648.729 kb on - strand, within HP15_3463 at 3648.783 kb on - strand, within HP15_3463 at 3648.783 kb on - strand, within HP15_3463 at 3648.821 kb on + strand, within HP15_3463 at 3648.874 kb on - strand, within HP15_3463 at 3648.919 kb on + strand, within HP15_3463 at 3648.919 kb on + strand, within HP15_3463 at 3648.940 kb on - strand, within HP15_3463 at 3649.065 kb on - strand, within HP15_3463 at 3649.070 kb on - strand, within HP15_3463 at 3649.120 kb on - strand, within HP15_3463 at 3649.130 kb on + strand, within HP15_3463 at 3649.138 kb on - strand, within HP15_3463 at 3649.182 kb on - strand, within HP15_3463 at 3649.393 kb on - strand at 3649.402 kb on + strand at 3649.415 kb on - strand at 3649.421 kb on - strand at 3649.429 kb on + strand at 3649.464 kb on - strand at 3649.478 kb on - strand at 3649.485 kb on + strand at 3649.488 kb on + strand at 3649.507 kb on - strand at 3649.532 kb on - strand at 3649.639 kb on - strand at 3649.644 kb on + strand at 3649.673 kb on - strand at 3649.673 kb on - strand at 3649.673 kb on - strand at 3649.720 kb on + strand at 3649.901 kb on + strand, within HP15_3464 at 3649.956 kb on - strand, within HP15_3464 at 3649.967 kb on - strand, within HP15_3464 at 3650.026 kb on - strand, within HP15_3464 at 3650.068 kb on - strand, within HP15_3464 at 3650.106 kb on + strand, within HP15_3464 at 3650.116 kb on - strand, within HP15_3464 at 3650.169 kb on + strand, within HP15_3464 at 3650.248 kb on + strand, within HP15_3464 at 3650.262 kb on + strand, within HP15_3464 at 3650.378 kb on - strand, within HP15_3464 at 3650.396 kb on + strand, within HP15_3464 at 3650.404 kb on - strand, within HP15_3464 at 3650.404 kb on - strand, within HP15_3464 at 3650.404 kb on - strand, within HP15_3464 at 3650.444 kb on + strand, within HP15_3464 at 3650.452 kb on - strand, within HP15_3464 at 3650.518 kb on + strand, within HP15_3464 at 3650.576 kb on - strand, within HP15_3464 at 3650.626 kb on - strand, within HP15_3464 at 3650.626 kb on - strand, within HP15_3464 at 3650.626 kb on - strand, within HP15_3464 at 3650.638 kb on - strand, within HP15_3464 at 3650.650 kb on - strand, within HP15_3464 at 3650.678 kb on - strand, within HP15_3464 at 3650.733 kb on - strand, within HP15_3464 at 3650.762 kb on - strand, within HP15_3464 at 3650.792 kb on + strand, within HP15_3464 at 3650.792 kb on + strand, within HP15_3464 at 3650.905 kb on + strand, within HP15_3464 at 3650.936 kb on + strand, within HP15_3464 at 3650.936 kb on + strand, within HP15_3464 at 3650.991 kb on + strand at 3651.057 kb on - strand at 3651.062 kb on + strand at 3651.146 kb on + strand at 3651.164 kb on + strand at 3651.266 kb on - strand, within HP15_3465 at 3651.292 kb on - strand, within HP15_3465 at 3651.316 kb on - strand, within HP15_3465 at 3651.353 kb on + strand, within HP15_3465 at 3651.385 kb on + strand, within HP15_3465 at 3651.431 kb on - strand, within HP15_3465 at 3651.521 kb on + strand, within HP15_3465 at 3651.528 kb on - strand, within HP15_3465 at 3651.529 kb on - strand, within HP15_3465 at 3651.598 kb on + strand, within HP15_3465 at 3651.609 kb on + strand, within HP15_3465 at 3651.645 kb on + strand, within HP15_3465 at 3651.645 kb on + strand, within HP15_3465 at 3651.655 kb on - strand, within HP15_3465 at 3651.673 kb on - strand, within HP15_3465 at 3651.675 kb on + strand, within HP15_3465 at 3651.675 kb on + strand, within HP15_3465 at 3651.698 kb on + strand at 3651.812 kb on + strand at 3651.839 kb on + strand at 3651.842 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 3,648,687 + HP15_3463 0.74 -3.8 3,648,715 + HP15_3463 0.75 -0.2 3,648,722 - HP15_3463 0.75 -0.2 3,648,729 - HP15_3463 0.76 -1.3 3,648,783 - HP15_3463 0.77 +0.4 3,648,783 - HP15_3463 0.77 +0.0 3,648,821 + HP15_3463 0.78 -0.0 3,648,874 - HP15_3463 0.80 -0.1 3,648,919 + HP15_3463 0.81 -1.0 3,648,919 + HP15_3463 0.81 +0.8 3,648,940 - HP15_3463 0.81 -4.0 3,649,065 - HP15_3463 0.85 -2.0 3,649,070 - HP15_3463 0.85 +0.4 3,649,120 - HP15_3463 0.86 -0.6 3,649,130 + HP15_3463 0.87 -1.6 3,649,138 - HP15_3463 0.87 +0.9 3,649,182 - HP15_3463 0.88 +0.4 3,649,393 - -0.1 3,649,402 + -1.1 3,649,415 - -2.4 3,649,421 - +0.8 3,649,429 + +0.5 3,649,464 - +0.5 3,649,478 - -0.1 3,649,485 + +0.7 3,649,488 + +0.4 3,649,507 - +0.6 3,649,532 - -0.2 3,649,639 - +0.6 3,649,644 + +1.3 3,649,673 - +1.3 3,649,673 - +0.8 3,649,673 - -0.6 3,649,720 + +0.3 3,649,901 + HP15_3464 0.18 -0.1 3,649,956 - HP15_3464 0.22 -1.2 3,649,967 - HP15_3464 0.22 +0.7 3,650,026 - HP15_3464 0.26 +0.5 3,650,068 - HP15_3464 0.29 +0.2 3,650,106 + HP15_3464 0.32 -0.2 3,650,116 - HP15_3464 0.33 -0.3 3,650,169 + HP15_3464 0.36 +0.8 3,650,248 + HP15_3464 0.42 -1.2 3,650,262 + HP15_3464 0.43 -0.9 3,650,378 - HP15_3464 0.51 -0.9 3,650,396 + HP15_3464 0.52 +1.5 3,650,404 - HP15_3464 0.52 -1.2 3,650,404 - HP15_3464 0.52 +0.1 3,650,404 - HP15_3464 0.52 -0.7 3,650,444 + HP15_3464 0.55 +0.0 3,650,452 - HP15_3464 0.56 +0.7 3,650,518 + HP15_3464 0.60 -0.2 3,650,576 - HP15_3464 0.64 -0.5 3,650,626 - HP15_3464 0.68 -1.5 3,650,626 - HP15_3464 0.68 +0.5 3,650,626 - HP15_3464 0.68 +0.1 3,650,638 - HP15_3464 0.69 +0.4 3,650,650 - HP15_3464 0.69 -0.8 3,650,678 - HP15_3464 0.71 +0.8 3,650,733 - HP15_3464 0.75 -0.4 3,650,762 - HP15_3464 0.77 -0.5 3,650,792 + HP15_3464 0.79 -2.2 3,650,792 + HP15_3464 0.79 -0.9 3,650,905 + HP15_3464 0.87 +0.5 3,650,936 + HP15_3464 0.89 -0.8 3,650,936 + HP15_3464 0.89 -0.1 3,650,991 + -0.2 3,651,057 - +0.7 3,651,062 + +0.2 3,651,146 + -0.5 3,651,164 + +0.7 3,651,266 - HP15_3465 0.24 -0.3 3,651,292 - HP15_3465 0.28 -1.0 3,651,316 - HP15_3465 0.32 -1.8 3,651,353 + HP15_3465 0.38 +0.8 3,651,385 + HP15_3465 0.43 -2.1 3,651,431 - HP15_3465 0.50 +0.2 3,651,521 + HP15_3465 0.65 -1.9 3,651,528 - HP15_3465 0.66 -0.6 3,651,529 - HP15_3465 0.66 -0.4 3,651,598 + HP15_3465 0.77 +0.4 3,651,609 + HP15_3465 0.79 +0.6 3,651,645 + HP15_3465 0.84 +0.4 3,651,645 + HP15_3465 0.84 -0.2 3,651,655 - HP15_3465 0.86 -3.3 3,651,673 - HP15_3465 0.89 -1.3 3,651,675 + HP15_3465 0.89 -0.5 3,651,675 + HP15_3465 0.89 +1.0 3,651,698 + -0.5 3,651,812 + +0.3 3,651,839 + +0.4 3,651,842 - +0.5
Or see this region's nucleotide sequence