Strain Fitness in Marinobacter adhaerens HP15 around HP15_3464

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3463 and HP15_3464 are separated by 32 nucleotidesHP15_3464 and HP15_3465 are separated by 16 nucleotidesHP15_3465 and HP15_3466 are separated by 11 nucleotides HP15_3463: HP15_3463 - type VI secretion protein IcmF, at 3,646,015 to 3,649,608 _3463 HP15_3464: HP15_3464 - ImpA domain protein, at 3,649,641 to 3,651,095 _3464 HP15_3465: HP15_3465 - type VI secretion system-associated, VCA0118, at 3,651,112 to 3,651,744 _3465 HP15_3466: HP15_3466 - two component, sigma54 specific, transcriptional regulator, Fis family, at 3,651,756 to 3,653,327 _3466 Position (kb) 3649 3650 3651 3652Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3648.687 kb on + strand, within HP15_3463at 3648.715 kb on + strand, within HP15_3463at 3648.722 kb on - strand, within HP15_3463at 3648.729 kb on - strand, within HP15_3463at 3648.783 kb on - strand, within HP15_3463at 3648.783 kb on - strand, within HP15_3463at 3648.821 kb on + strand, within HP15_3463at 3648.874 kb on - strand, within HP15_3463at 3648.919 kb on + strand, within HP15_3463at 3648.919 kb on + strand, within HP15_3463at 3648.940 kb on - strand, within HP15_3463at 3649.065 kb on - strand, within HP15_3463at 3649.070 kb on - strand, within HP15_3463at 3649.120 kb on - strand, within HP15_3463at 3649.130 kb on + strand, within HP15_3463at 3649.138 kb on - strand, within HP15_3463at 3649.182 kb on - strand, within HP15_3463at 3649.393 kb on - strandat 3649.402 kb on + strandat 3649.415 kb on - strandat 3649.421 kb on - strandat 3649.429 kb on + strandat 3649.464 kb on - strandat 3649.478 kb on - strandat 3649.485 kb on + strandat 3649.488 kb on + strandat 3649.507 kb on - strandat 3649.532 kb on - strandat 3649.639 kb on - strandat 3649.644 kb on + strandat 3649.673 kb on - strandat 3649.673 kb on - strandat 3649.673 kb on - strandat 3649.720 kb on + strandat 3649.901 kb on + strand, within HP15_3464at 3649.956 kb on - strand, within HP15_3464at 3649.967 kb on - strand, within HP15_3464at 3650.026 kb on - strand, within HP15_3464at 3650.068 kb on - strand, within HP15_3464at 3650.106 kb on + strand, within HP15_3464at 3650.116 kb on - strand, within HP15_3464at 3650.169 kb on + strand, within HP15_3464at 3650.248 kb on + strand, within HP15_3464at 3650.262 kb on + strand, within HP15_3464at 3650.378 kb on - strand, within HP15_3464at 3650.396 kb on + strand, within HP15_3464at 3650.404 kb on - strand, within HP15_3464at 3650.404 kb on - strand, within HP15_3464at 3650.404 kb on - strand, within HP15_3464at 3650.444 kb on + strand, within HP15_3464at 3650.452 kb on - strand, within HP15_3464at 3650.518 kb on + strand, within HP15_3464at 3650.576 kb on - strand, within HP15_3464at 3650.626 kb on - strand, within HP15_3464at 3650.626 kb on - strand, within HP15_3464at 3650.626 kb on - strand, within HP15_3464at 3650.638 kb on - strand, within HP15_3464at 3650.650 kb on - strand, within HP15_3464at 3650.678 kb on - strand, within HP15_3464at 3650.733 kb on - strand, within HP15_3464at 3650.762 kb on - strand, within HP15_3464at 3650.792 kb on + strand, within HP15_3464at 3650.792 kb on + strand, within HP15_3464at 3650.905 kb on + strand, within HP15_3464at 3650.936 kb on + strand, within HP15_3464at 3650.936 kb on + strand, within HP15_3464at 3650.991 kb on + strandat 3651.057 kb on - strandat 3651.062 kb on + strandat 3651.146 kb on + strandat 3651.164 kb on + strandat 3651.266 kb on - strand, within HP15_3465at 3651.292 kb on - strand, within HP15_3465at 3651.316 kb on - strand, within HP15_3465at 3651.353 kb on + strand, within HP15_3465at 3651.385 kb on + strand, within HP15_3465at 3651.431 kb on - strand, within HP15_3465at 3651.521 kb on + strand, within HP15_3465at 3651.528 kb on - strand, within HP15_3465at 3651.529 kb on - strand, within HP15_3465at 3651.598 kb on + strand, within HP15_3465at 3651.609 kb on + strand, within HP15_3465at 3651.645 kb on + strand, within HP15_3465at 3651.645 kb on + strand, within HP15_3465at 3651.655 kb on - strand, within HP15_3465at 3651.673 kb on - strand, within HP15_3465at 3651.675 kb on + strand, within HP15_3465at 3651.675 kb on + strand, within HP15_3465at 3651.698 kb on + strandat 3651.812 kb on + strandat 3651.839 kb on + strandat 3651.842 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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3,648,687 + HP15_3463 0.74 -3.8
3,648,715 + HP15_3463 0.75 -0.2
3,648,722 - HP15_3463 0.75 -0.2
3,648,729 - HP15_3463 0.76 -1.3
3,648,783 - HP15_3463 0.77 +0.4
3,648,783 - HP15_3463 0.77 +0.0
3,648,821 + HP15_3463 0.78 -0.0
3,648,874 - HP15_3463 0.80 -0.1
3,648,919 + HP15_3463 0.81 -1.0
3,648,919 + HP15_3463 0.81 +0.8
3,648,940 - HP15_3463 0.81 -4.0
3,649,065 - HP15_3463 0.85 -2.0
3,649,070 - HP15_3463 0.85 +0.4
3,649,120 - HP15_3463 0.86 -0.6
3,649,130 + HP15_3463 0.87 -1.6
3,649,138 - HP15_3463 0.87 +0.9
3,649,182 - HP15_3463 0.88 +0.4
3,649,393 - -0.1
3,649,402 + -1.1
3,649,415 - -2.4
3,649,421 - +0.8
3,649,429 + +0.5
3,649,464 - +0.5
3,649,478 - -0.1
3,649,485 + +0.7
3,649,488 + +0.4
3,649,507 - +0.6
3,649,532 - -0.2
3,649,639 - +0.6
3,649,644 + +1.3
3,649,673 - +1.3
3,649,673 - +0.8
3,649,673 - -0.6
3,649,720 + +0.3
3,649,901 + HP15_3464 0.18 -0.1
3,649,956 - HP15_3464 0.22 -1.2
3,649,967 - HP15_3464 0.22 +0.7
3,650,026 - HP15_3464 0.26 +0.5
3,650,068 - HP15_3464 0.29 +0.2
3,650,106 + HP15_3464 0.32 -0.2
3,650,116 - HP15_3464 0.33 -0.3
3,650,169 + HP15_3464 0.36 +0.8
3,650,248 + HP15_3464 0.42 -1.2
3,650,262 + HP15_3464 0.43 -0.9
3,650,378 - HP15_3464 0.51 -0.9
3,650,396 + HP15_3464 0.52 +1.5
3,650,404 - HP15_3464 0.52 -1.2
3,650,404 - HP15_3464 0.52 +0.1
3,650,404 - HP15_3464 0.52 -0.7
3,650,444 + HP15_3464 0.55 +0.0
3,650,452 - HP15_3464 0.56 +0.7
3,650,518 + HP15_3464 0.60 -0.2
3,650,576 - HP15_3464 0.64 -0.5
3,650,626 - HP15_3464 0.68 -1.5
3,650,626 - HP15_3464 0.68 +0.5
3,650,626 - HP15_3464 0.68 +0.1
3,650,638 - HP15_3464 0.69 +0.4
3,650,650 - HP15_3464 0.69 -0.8
3,650,678 - HP15_3464 0.71 +0.8
3,650,733 - HP15_3464 0.75 -0.4
3,650,762 - HP15_3464 0.77 -0.5
3,650,792 + HP15_3464 0.79 -2.2
3,650,792 + HP15_3464 0.79 -0.9
3,650,905 + HP15_3464 0.87 +0.5
3,650,936 + HP15_3464 0.89 -0.8
3,650,936 + HP15_3464 0.89 -0.1
3,650,991 + -0.2
3,651,057 - +0.7
3,651,062 + +0.2
3,651,146 + -0.5
3,651,164 + +0.7
3,651,266 - HP15_3465 0.24 -0.3
3,651,292 - HP15_3465 0.28 -1.0
3,651,316 - HP15_3465 0.32 -1.8
3,651,353 + HP15_3465 0.38 +0.8
3,651,385 + HP15_3465 0.43 -2.1
3,651,431 - HP15_3465 0.50 +0.2
3,651,521 + HP15_3465 0.65 -1.9
3,651,528 - HP15_3465 0.66 -0.6
3,651,529 - HP15_3465 0.66 -0.4
3,651,598 + HP15_3465 0.77 +0.4
3,651,609 + HP15_3465 0.79 +0.6
3,651,645 + HP15_3465 0.84 +0.4
3,651,645 + HP15_3465 0.84 -0.2
3,651,655 - HP15_3465 0.86 -3.3
3,651,673 - HP15_3465 0.89 -1.3
3,651,675 + HP15_3465 0.89 -0.5
3,651,675 + HP15_3465 0.89 +1.0
3,651,698 + -0.5
3,651,812 + +0.3
3,651,839 + +0.4
3,651,842 - +0.5

Or see this region's nucleotide sequence