Strain Fitness in Marinobacter adhaerens HP15 around HP15_3343

Experiment: m.b. Cholin acetate 153.15 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3342 and HP15_3343 are separated by 173 nucleotidesHP15_3343 and HP15_3344 are separated by 89 nucleotides HP15_3342: HP15_3342 - pyridoxal-dependent decarboxylase, at 3,502,851 to 3,504,527 _3342 HP15_3343: HP15_3343 - conserved hypothetical protein, at 3,504,701 to 3,504,967 _3343 HP15_3344: HP15_3344 - phosphate transporter family protein, at 3,505,057 to 3,506,616 _3344 Position (kb) 3504 3505Strain fitness (log2 ratio) -1 0 1 2 3at 3504.523 kb on + strandat 3504.530 kb on - strandat 3504.645 kb on + strandat 3504.696 kb on - strandat 3504.894 kb on + strand, within HP15_3343at 3504.989 kb on + strandat 3504.989 kb on + strandat 3505.121 kb on - strandat 3505.208 kb on + strandat 3505.208 kb on + strandat 3505.216 kb on - strand, within HP15_3344at 3505.216 kb on - strand, within HP15_3344at 3505.216 kb on - strand, within HP15_3344at 3505.343 kb on + strand, within HP15_3344at 3505.432 kb on + strand, within HP15_3344at 3505.457 kb on + strand, within HP15_3344at 3505.490 kb on + strand, within HP15_3344at 3505.504 kb on + strand, within HP15_3344at 3505.507 kb on - strand, within HP15_3344at 3505.507 kb on - strand, within HP15_3344at 3505.548 kb on + strand, within HP15_3344at 3505.575 kb on + strand, within HP15_3344at 3505.589 kb on - strand, within HP15_3344at 3505.674 kb on + strand, within HP15_3344at 3505.712 kb on + strand, within HP15_3344at 3505.747 kb on + strand, within HP15_3344at 3505.817 kb on - strand, within HP15_3344at 3505.898 kb on + strand, within HP15_3344

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
remove
3,504,523 + +1.2
3,504,530 - -0.6
3,504,645 + +0.0
3,504,696 - -0.3
3,504,894 + HP15_3343 0.72 +0.3
3,504,989 + +0.5
3,504,989 + +0.7
3,505,121 - +2.2
3,505,208 + +2.2
3,505,208 + +1.6
3,505,216 - HP15_3344 0.10 +1.2
3,505,216 - HP15_3344 0.10 +1.5
3,505,216 - HP15_3344 0.10 +2.1
3,505,343 + HP15_3344 0.18 +1.7
3,505,432 + HP15_3344 0.24 +1.4
3,505,457 + HP15_3344 0.26 +2.3
3,505,490 + HP15_3344 0.28 +2.5
3,505,504 + HP15_3344 0.29 +1.5
3,505,507 - HP15_3344 0.29 +2.5
3,505,507 - HP15_3344 0.29 +2.2
3,505,548 + HP15_3344 0.31 +1.2
3,505,575 + HP15_3344 0.33 +2.4
3,505,589 - HP15_3344 0.34 +2.8
3,505,674 + HP15_3344 0.40 +2.4
3,505,712 + HP15_3344 0.42 +2.9
3,505,747 + HP15_3344 0.44 +2.0
3,505,817 - HP15_3344 0.49 +1.7
3,505,898 + HP15_3344 0.54 +2.7

Or see this region's nucleotide sequence