Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3339 and HP15_3340 are separated by 151 nucleotides HP15_3340 and HP15_3341 are separated by 67 nucleotides HP15_3341 and HP15_3342 are separated by 15 nucleotides HP15_3342 and HP15_3343 are separated by 173 nucleotides HP15_3343 and HP15_3344 are separated by 89 nucleotides
HP15_3339: HP15_3339 - acyl-CoA dehydrogenase domain protein, at 3,500,467 to 3,502,167
_3339
HP15_3340: HP15_3340 - protein containing DUF503, at 3,502,319 to 3,502,663
_3340
HP15_3341: HP15_3341 - hypothetical protein, at 3,502,731 to 3,502,835
_3341
HP15_3342: HP15_3342 - pyridoxal-dependent decarboxylase, at 3,502,851 to 3,504,527
_3342
HP15_3343: HP15_3343 - conserved hypothetical protein, at 3,504,701 to 3,504,967
_3343
HP15_3344: HP15_3344 - phosphate transporter family protein, at 3,505,057 to 3,506,616
_3344
Position (kb)
3502
3503
3504
3505 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3502.000 kb on + strand at 3502.008 kb on - strand at 3502.008 kb on - strand at 3502.008 kb on - strand at 3502.016 kb on + strand at 3502.024 kb on - strand at 3502.024 kb on - strand at 3502.176 kb on - strand at 3502.250 kb on - strand at 3502.361 kb on + strand, within HP15_3340 at 3502.367 kb on - strand, within HP15_3340 at 3502.432 kb on + strand, within HP15_3340 at 3502.433 kb on - strand, within HP15_3340 at 3502.523 kb on + strand, within HP15_3340 at 3502.523 kb on + strand, within HP15_3340 at 3502.531 kb on - strand, within HP15_3340 at 3502.538 kb on + strand, within HP15_3340 at 3502.553 kb on + strand, within HP15_3340 at 3502.561 kb on - strand, within HP15_3340 at 3502.563 kb on + strand, within HP15_3340 at 3502.575 kb on + strand, within HP15_3340 at 3502.666 kb on + strand at 3502.666 kb on + strand at 3502.674 kb on - strand at 3502.675 kb on + strand at 3502.707 kb on + strand at 3502.848 kb on + strand at 3504.523 kb on + strand at 3504.530 kb on - strand at 3504.645 kb on + strand at 3504.696 kb on - strand at 3504.894 kb on + strand, within HP15_3343 at 3504.989 kb on + strand at 3504.989 kb on + strand at 3505.121 kb on - strand at 3505.208 kb on + strand at 3505.208 kb on + strand at 3505.216 kb on - strand, within HP15_3344 at 3505.216 kb on - strand, within HP15_3344 at 3505.216 kb on - strand, within HP15_3344 at 3505.343 kb on + strand, within HP15_3344 at 3505.432 kb on + strand, within HP15_3344 at 3505.457 kb on + strand, within HP15_3344 at 3505.490 kb on + strand, within HP15_3344 at 3505.504 kb on + strand, within HP15_3344 at 3505.507 kb on - strand, within HP15_3344 at 3505.507 kb on - strand, within HP15_3344
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 3,502,000 + +0.2 3,502,008 - -0.3 3,502,008 - +0.4 3,502,008 - -1.3 3,502,016 + -0.4 3,502,024 - -0.8 3,502,024 - +0.1 3,502,176 - -2.0 3,502,250 - +0.1 3,502,361 + HP15_3340 0.12 -0.0 3,502,367 - HP15_3340 0.14 -0.3 3,502,432 + HP15_3340 0.33 -0.3 3,502,433 - HP15_3340 0.33 -0.5 3,502,523 + HP15_3340 0.59 -0.1 3,502,523 + HP15_3340 0.59 -1.0 3,502,531 - HP15_3340 0.61 +1.1 3,502,538 + HP15_3340 0.63 -0.3 3,502,553 + HP15_3340 0.68 +0.4 3,502,561 - HP15_3340 0.70 -0.1 3,502,563 + HP15_3340 0.71 +0.2 3,502,575 + HP15_3340 0.74 -0.3 3,502,666 + +1.0 3,502,666 + +0.4 3,502,674 - +0.4 3,502,675 + -0.2 3,502,707 + +0.5 3,502,848 + +0.3 3,504,523 + +1.2 3,504,530 - -0.6 3,504,645 + +0.0 3,504,696 - -0.3 3,504,894 + HP15_3343 0.72 +0.3 3,504,989 + +0.5 3,504,989 + +0.7 3,505,121 - +2.2 3,505,208 + +2.2 3,505,208 + +1.6 3,505,216 - HP15_3344 0.10 +1.2 3,505,216 - HP15_3344 0.10 +1.5 3,505,216 - HP15_3344 0.10 +2.1 3,505,343 + HP15_3344 0.18 +1.7 3,505,432 + HP15_3344 0.24 +1.4 3,505,457 + HP15_3344 0.26 +2.3 3,505,490 + HP15_3344 0.28 +2.5 3,505,504 + HP15_3344 0.29 +1.5 3,505,507 - HP15_3344 0.29 +2.5 3,505,507 - HP15_3344 0.29 +2.2
Or see this region's nucleotide sequence