Strain Fitness in Marinobacter adhaerens HP15 around HP15_3338

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3336 and HP15_3337 are separated by 157 nucleotidesHP15_3337 and HP15_3338 are separated by 272 nucleotidesHP15_3338 and HP15_3339 are separated by 2 nucleotides HP15_3336: HP15_3336 - lipase chaperone, at 3,498,158 to 3,499,180 _3336 HP15_3337: HP15_3337 - delta-aminolevulinic acid dehydratase, at 3,499,338 to 3,499,559 _3337 HP15_3338: HP15_3338 - transcriptional regulator, TetR family, at 3,499,832 to 3,500,464 _3338 HP15_3339: HP15_3339 - acyl-CoA dehydrogenase domain protein, at 3,500,467 to 3,502,167 _3339 Position (kb) 3499 3500 3501Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3498.926 kb on - strand, within HP15_3336at 3498.976 kb on - strand, within HP15_3336at 3499.032 kb on + strand, within HP15_3336at 3499.112 kb on - strandat 3499.142 kb on - strandat 3499.277 kb on + strandat 3499.327 kb on + strandat 3499.404 kb on - strand, within HP15_3337at 3499.470 kb on - strand, within HP15_3337at 3499.512 kb on + strand, within HP15_3337at 3499.529 kb on + strand, within HP15_3337at 3499.529 kb on + strand, within HP15_3337at 3499.529 kb on + strand, within HP15_3337at 3499.537 kb on - strandat 3499.537 kb on - strandat 3499.638 kb on - strandat 3499.899 kb on + strand, within HP15_3338at 3500.001 kb on + strand, within HP15_3338at 3500.007 kb on + strand, within HP15_3338at 3500.072 kb on + strand, within HP15_3338at 3500.080 kb on - strand, within HP15_3338at 3500.086 kb on - strand, within HP15_3338at 3500.229 kb on + strand, within HP15_3338at 3500.297 kb on + strand, within HP15_3338at 3500.305 kb on - strand, within HP15_3338at 3500.560 kb on + strandat 3500.568 kb on - strandat 3500.589 kb on + strandat 3500.597 kb on - strandat 3500.638 kb on + strand, within HP15_3339at 3500.654 kb on - strand, within HP15_3339at 3500.654 kb on - strand, within HP15_3339at 3500.654 kb on - strand, within HP15_3339at 3500.667 kb on + strand, within HP15_3339at 3500.684 kb on + strand, within HP15_3339at 3500.764 kb on + strand, within HP15_3339at 3500.783 kb on + strand, within HP15_3339at 3500.783 kb on + strand, within HP15_3339at 3500.791 kb on - strand, within HP15_3339at 3500.791 kb on - strand, within HP15_3339at 3500.791 kb on - strand, within HP15_3339at 3500.791 kb on - strand, within HP15_3339at 3500.803 kb on + strand, within HP15_3339at 3500.818 kb on + strand, within HP15_3339at 3500.823 kb on - strand, within HP15_3339at 3500.830 kb on + strand, within HP15_3339at 3500.840 kb on + strand, within HP15_3339at 3500.872 kb on + strand, within HP15_3339at 3500.872 kb on + strand, within HP15_3339at 3500.872 kb on + strand, within HP15_3339at 3500.872 kb on + strand, within HP15_3339at 3500.872 kb on + strand, within HP15_3339at 3500.880 kb on - strand, within HP15_3339at 3500.880 kb on - strand, within HP15_3339at 3500.889 kb on + strand, within HP15_3339at 3500.897 kb on - strand, within HP15_3339at 3500.903 kb on - strand, within HP15_3339at 3500.913 kb on - strand, within HP15_3339at 3500.923 kb on + strand, within HP15_3339at 3500.923 kb on + strand, within HP15_3339at 3500.931 kb on - strand, within HP15_3339at 3500.931 kb on - strand, within HP15_3339at 3500.961 kb on + strand, within HP15_3339at 3500.986 kb on + strand, within HP15_3339at 3501.228 kb on - strand, within HP15_3339at 3501.357 kb on + strand, within HP15_3339at 3501.365 kb on - strand, within HP15_3339

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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3,498,926 - HP15_3336 0.75 -0.0
3,498,976 - HP15_3336 0.80 +1.4
3,499,032 + HP15_3336 0.85 +0.8
3,499,112 - -0.2
3,499,142 - +0.8
3,499,277 + +1.1
3,499,327 + +0.9
3,499,404 - HP15_3337 0.30 -1.9
3,499,470 - HP15_3337 0.59 +0.1
3,499,512 + HP15_3337 0.78 +0.6
3,499,529 + HP15_3337 0.86 +0.2
3,499,529 + HP15_3337 0.86 +1.1
3,499,529 + HP15_3337 0.86 +1.7
3,499,537 - +0.3
3,499,537 - -1.1
3,499,638 - -0.2
3,499,899 + HP15_3338 0.11 -2.7
3,500,001 + HP15_3338 0.27 -2.2
3,500,007 + HP15_3338 0.28 -2.9
3,500,072 + HP15_3338 0.38 -2.5
3,500,080 - HP15_3338 0.39 -1.6
3,500,086 - HP15_3338 0.40 -1.9
3,500,229 + HP15_3338 0.63 -1.4
3,500,297 + HP15_3338 0.73 +0.1
3,500,305 - HP15_3338 0.75 -3.5
3,500,560 + -3.2
3,500,568 - -0.8
3,500,589 + +0.0
3,500,597 - +0.5
3,500,638 + HP15_3339 0.10 -0.1
3,500,654 - HP15_3339 0.11 -0.3
3,500,654 - HP15_3339 0.11 -0.2
3,500,654 - HP15_3339 0.11 -0.5
3,500,667 + HP15_3339 0.12 -0.1
3,500,684 + HP15_3339 0.13 +0.9
3,500,764 + HP15_3339 0.17 +1.5
3,500,783 + HP15_3339 0.19 -1.0
3,500,783 + HP15_3339 0.19 -0.3
3,500,791 - HP15_3339 0.19 -0.3
3,500,791 - HP15_3339 0.19 -1.6
3,500,791 - HP15_3339 0.19 -0.4
3,500,791 - HP15_3339 0.19 -0.5
3,500,803 + HP15_3339 0.20 +0.2
3,500,818 + HP15_3339 0.21 +0.4
3,500,823 - HP15_3339 0.21 +1.8
3,500,830 + HP15_3339 0.21 +0.5
3,500,840 + HP15_3339 0.22 +0.0
3,500,872 + HP15_3339 0.24 -0.3
3,500,872 + HP15_3339 0.24 -0.4
3,500,872 + HP15_3339 0.24 +0.2
3,500,872 + HP15_3339 0.24 +0.1
3,500,872 + HP15_3339 0.24 +0.3
3,500,880 - HP15_3339 0.24 -1.5
3,500,880 - HP15_3339 0.24 +0.2
3,500,889 + HP15_3339 0.25 +0.1
3,500,897 - HP15_3339 0.25 -0.0
3,500,903 - HP15_3339 0.26 -1.0
3,500,913 - HP15_3339 0.26 -0.4
3,500,923 + HP15_3339 0.27 -2.4
3,500,923 + HP15_3339 0.27 +0.2
3,500,931 - HP15_3339 0.27 -1.4
3,500,931 - HP15_3339 0.27 -0.1
3,500,961 + HP15_3339 0.29 +0.4
3,500,986 + HP15_3339 0.31 -0.2
3,501,228 - HP15_3339 0.45 -0.4
3,501,357 + HP15_3339 0.52 +0.5
3,501,365 - HP15_3339 0.53 +0.0

Or see this region's nucleotide sequence