Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3336 and HP15_3337 are separated by 157 nucleotides HP15_3337 and HP15_3338 are separated by 272 nucleotides HP15_3338 and HP15_3339 are separated by 2 nucleotides
HP15_3336: HP15_3336 - lipase chaperone, at 3,498,158 to 3,499,180
_3336
HP15_3337: HP15_3337 - delta-aminolevulinic acid dehydratase, at 3,499,338 to 3,499,559
_3337
HP15_3338: HP15_3338 - transcriptional regulator, TetR family, at 3,499,832 to 3,500,464
_3338
HP15_3339: HP15_3339 - acyl-CoA dehydrogenase domain protein, at 3,500,467 to 3,502,167
_3339
Position (kb)
3499
3500
3501 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3498.926 kb on - strand, within HP15_3336 at 3498.976 kb on - strand, within HP15_3336 at 3499.032 kb on + strand, within HP15_3336 at 3499.112 kb on - strand at 3499.142 kb on - strand at 3499.277 kb on + strand at 3499.327 kb on + strand at 3499.404 kb on - strand, within HP15_3337 at 3499.470 kb on - strand, within HP15_3337 at 3499.512 kb on + strand, within HP15_3337 at 3499.529 kb on + strand, within HP15_3337 at 3499.529 kb on + strand, within HP15_3337 at 3499.529 kb on + strand, within HP15_3337 at 3499.537 kb on - strand at 3499.537 kb on - strand at 3499.638 kb on - strand at 3499.899 kb on + strand, within HP15_3338 at 3500.001 kb on + strand, within HP15_3338 at 3500.007 kb on + strand, within HP15_3338 at 3500.072 kb on + strand, within HP15_3338 at 3500.080 kb on - strand, within HP15_3338 at 3500.086 kb on - strand, within HP15_3338 at 3500.229 kb on + strand, within HP15_3338 at 3500.297 kb on + strand, within HP15_3338 at 3500.305 kb on - strand, within HP15_3338 at 3500.560 kb on + strand at 3500.568 kb on - strand at 3500.589 kb on + strand at 3500.597 kb on - strand at 3500.638 kb on + strand, within HP15_3339 at 3500.654 kb on - strand, within HP15_3339 at 3500.654 kb on - strand, within HP15_3339 at 3500.654 kb on - strand, within HP15_3339 at 3500.667 kb on + strand, within HP15_3339 at 3500.684 kb on + strand, within HP15_3339 at 3500.764 kb on + strand, within HP15_3339 at 3500.783 kb on + strand, within HP15_3339 at 3500.783 kb on + strand, within HP15_3339 at 3500.791 kb on - strand, within HP15_3339 at 3500.791 kb on - strand, within HP15_3339 at 3500.791 kb on - strand, within HP15_3339 at 3500.791 kb on - strand, within HP15_3339 at 3500.803 kb on + strand, within HP15_3339 at 3500.818 kb on + strand, within HP15_3339 at 3500.823 kb on - strand, within HP15_3339 at 3500.830 kb on + strand, within HP15_3339 at 3500.840 kb on + strand, within HP15_3339 at 3500.872 kb on + strand, within HP15_3339 at 3500.872 kb on + strand, within HP15_3339 at 3500.872 kb on + strand, within HP15_3339 at 3500.872 kb on + strand, within HP15_3339 at 3500.872 kb on + strand, within HP15_3339 at 3500.880 kb on - strand, within HP15_3339 at 3500.880 kb on - strand, within HP15_3339 at 3500.889 kb on + strand, within HP15_3339 at 3500.897 kb on - strand, within HP15_3339 at 3500.903 kb on - strand, within HP15_3339 at 3500.913 kb on - strand, within HP15_3339 at 3500.923 kb on + strand, within HP15_3339 at 3500.923 kb on + strand, within HP15_3339 at 3500.931 kb on - strand, within HP15_3339 at 3500.931 kb on - strand, within HP15_3339 at 3500.961 kb on + strand, within HP15_3339 at 3500.986 kb on + strand, within HP15_3339 at 3501.228 kb on - strand, within HP15_3339 at 3501.357 kb on + strand, within HP15_3339 at 3501.365 kb on - strand, within HP15_3339
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 3,498,926 - HP15_3336 0.75 -0.0 3,498,976 - HP15_3336 0.80 +1.4 3,499,032 + HP15_3336 0.85 +0.8 3,499,112 - -0.2 3,499,142 - +0.8 3,499,277 + +1.1 3,499,327 + +0.9 3,499,404 - HP15_3337 0.30 -1.9 3,499,470 - HP15_3337 0.59 +0.1 3,499,512 + HP15_3337 0.78 +0.6 3,499,529 + HP15_3337 0.86 +0.2 3,499,529 + HP15_3337 0.86 +1.1 3,499,529 + HP15_3337 0.86 +1.7 3,499,537 - +0.3 3,499,537 - -1.1 3,499,638 - -0.2 3,499,899 + HP15_3338 0.11 -2.7 3,500,001 + HP15_3338 0.27 -2.2 3,500,007 + HP15_3338 0.28 -2.9 3,500,072 + HP15_3338 0.38 -2.5 3,500,080 - HP15_3338 0.39 -1.6 3,500,086 - HP15_3338 0.40 -1.9 3,500,229 + HP15_3338 0.63 -1.4 3,500,297 + HP15_3338 0.73 +0.1 3,500,305 - HP15_3338 0.75 -3.5 3,500,560 + -3.2 3,500,568 - -0.8 3,500,589 + +0.0 3,500,597 - +0.5 3,500,638 + HP15_3339 0.10 -0.1 3,500,654 - HP15_3339 0.11 -0.3 3,500,654 - HP15_3339 0.11 -0.2 3,500,654 - HP15_3339 0.11 -0.5 3,500,667 + HP15_3339 0.12 -0.1 3,500,684 + HP15_3339 0.13 +0.9 3,500,764 + HP15_3339 0.17 +1.5 3,500,783 + HP15_3339 0.19 -1.0 3,500,783 + HP15_3339 0.19 -0.3 3,500,791 - HP15_3339 0.19 -0.3 3,500,791 - HP15_3339 0.19 -1.6 3,500,791 - HP15_3339 0.19 -0.4 3,500,791 - HP15_3339 0.19 -0.5 3,500,803 + HP15_3339 0.20 +0.2 3,500,818 + HP15_3339 0.21 +0.4 3,500,823 - HP15_3339 0.21 +1.8 3,500,830 + HP15_3339 0.21 +0.5 3,500,840 + HP15_3339 0.22 +0.0 3,500,872 + HP15_3339 0.24 -0.3 3,500,872 + HP15_3339 0.24 -0.4 3,500,872 + HP15_3339 0.24 +0.2 3,500,872 + HP15_3339 0.24 +0.1 3,500,872 + HP15_3339 0.24 +0.3 3,500,880 - HP15_3339 0.24 -1.5 3,500,880 - HP15_3339 0.24 +0.2 3,500,889 + HP15_3339 0.25 +0.1 3,500,897 - HP15_3339 0.25 -0.0 3,500,903 - HP15_3339 0.26 -1.0 3,500,913 - HP15_3339 0.26 -0.4 3,500,923 + HP15_3339 0.27 -2.4 3,500,923 + HP15_3339 0.27 +0.2 3,500,931 - HP15_3339 0.27 -1.4 3,500,931 - HP15_3339 0.27 -0.1 3,500,961 + HP15_3339 0.29 +0.4 3,500,986 + HP15_3339 0.31 -0.2 3,501,228 - HP15_3339 0.45 -0.4 3,501,357 + HP15_3339 0.52 +0.5 3,501,365 - HP15_3339 0.53 +0.0
Or see this region's nucleotide sequence