Strain Fitness in Marinobacter adhaerens HP15 around HP15_3298

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3297 and HP15_3298 are separated by 11 nucleotidesHP15_3298 and HP15_3299 are separated by 82 nucleotidesHP15_3299 and HP15_3300 overlap by 25 nucleotides HP15_3297: HP15_3297 - binding-protein-dependent transport systems inner membrane component, at 3,454,957 to 3,455,991 _3297 HP15_3298: HP15_3298 - glycine betaine/L-proline ABC transporter, ATPase subunit, at 3,456,003 to 3,457,061 _3298 HP15_3299: HP15_3299 - ABC transporter, periplasmic domain protein, at 3,457,144 to 3,457,986 _3299 HP15_3300: HP15_3300 - protein of unknown function, Meta and HslJ, at 3,457,962 to 3,458,915 _3300 Position (kb) 3456 3457 3458Strain fitness (log2 ratio) -2 -1 0 1 2at 3455.042 kb on - strandat 3455.170 kb on + strand, within HP15_3297at 3455.171 kb on + strand, within HP15_3297at 3455.194 kb on + strand, within HP15_3297at 3455.212 kb on - strand, within HP15_3297at 3455.374 kb on - strand, within HP15_3297at 3455.385 kb on - strand, within HP15_3297at 3455.448 kb on - strand, within HP15_3297at 3455.450 kb on + strand, within HP15_3297at 3455.467 kb on + strand, within HP15_3297at 3455.529 kb on - strand, within HP15_3297at 3455.588 kb on - strand, within HP15_3297at 3455.705 kb on + strand, within HP15_3297at 3455.728 kb on + strand, within HP15_3297at 3455.748 kb on - strand, within HP15_3297at 3455.760 kb on + strand, within HP15_3297at 3455.766 kb on + strand, within HP15_3297at 3455.768 kb on - strand, within HP15_3297at 3455.777 kb on + strand, within HP15_3297at 3455.851 kb on + strand, within HP15_3297at 3455.851 kb on - strand, within HP15_3297at 3455.907 kb on + strandat 3455.974 kb on - strandat 3456.000 kb on - strandat 3456.058 kb on + strandat 3456.058 kb on + strandat 3456.138 kb on - strand, within HP15_3298at 3456.184 kb on + strand, within HP15_3298at 3456.217 kb on - strand, within HP15_3298at 3456.226 kb on - strand, within HP15_3298at 3456.383 kb on - strand, within HP15_3298at 3456.610 kb on - strand, within HP15_3298at 3456.648 kb on - strand, within HP15_3298at 3456.718 kb on + strand, within HP15_3298at 3456.840 kb on - strand, within HP15_3298at 3456.840 kb on - strand, within HP15_3298at 3456.851 kb on - strand, within HP15_3298at 3456.851 kb on - strand, within HP15_3298at 3456.853 kb on + strand, within HP15_3298at 3456.861 kb on - strand, within HP15_3298at 3456.920 kb on + strand, within HP15_3298at 3456.928 kb on - strand, within HP15_3298at 3456.977 kb on + strandat 3457.197 kb on + strandat 3457.414 kb on + strand, within HP15_3299at 3457.438 kb on + strand, within HP15_3299at 3457.488 kb on - strand, within HP15_3299at 3457.579 kb on + strand, within HP15_3299at 3457.579 kb on + strand, within HP15_3299at 3457.623 kb on - strand, within HP15_3299at 3457.634 kb on - strand, within HP15_3299at 3457.670 kb on - strand, within HP15_3299at 3457.691 kb on - strand, within HP15_3299at 3457.716 kb on - strand, within HP15_3299at 3457.753 kb on - strand, within HP15_3299at 3457.775 kb on - strand, within HP15_3299at 3457.939 kb on - strandat 3457.945 kb on + strandat 3457.948 kb on - strandat 3457.979 kb on - strandat 3457.979 kb on - strandat 3457.989 kb on + strandat 3458.014 kb on + strandat 3458.053 kb on + strandat 3458.053 kb on + strandat 3458.053 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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3,455,042 - +0.0
3,455,170 + HP15_3297 0.21 -0.5
3,455,171 + HP15_3297 0.21 -1.1
3,455,194 + HP15_3297 0.23 +1.5
3,455,212 - HP15_3297 0.25 +0.8
3,455,374 - HP15_3297 0.40 +0.2
3,455,385 - HP15_3297 0.41 +0.5
3,455,448 - HP15_3297 0.47 +0.0
3,455,450 + HP15_3297 0.48 +1.3
3,455,467 + HP15_3297 0.49 -1.9
3,455,529 - HP15_3297 0.55 +0.4
3,455,588 - HP15_3297 0.61 +0.6
3,455,705 + HP15_3297 0.72 +0.8
3,455,728 + HP15_3297 0.74 +0.9
3,455,748 - HP15_3297 0.76 +0.7
3,455,760 + HP15_3297 0.78 +0.4
3,455,766 + HP15_3297 0.78 +1.1
3,455,768 - HP15_3297 0.78 -0.1
3,455,777 + HP15_3297 0.79 +0.4
3,455,851 + HP15_3297 0.86 +0.1
3,455,851 - HP15_3297 0.86 +2.4
3,455,907 + -0.3
3,455,974 - +0.7
3,456,000 - -1.0
3,456,058 + +0.3
3,456,058 + -0.4
3,456,138 - HP15_3298 0.13 +1.4
3,456,184 + HP15_3298 0.17 +0.6
3,456,217 - HP15_3298 0.20 +1.3
3,456,226 - HP15_3298 0.21 +0.7
3,456,383 - HP15_3298 0.36 +0.0
3,456,610 - HP15_3298 0.57 +0.3
3,456,648 - HP15_3298 0.61 +0.0
3,456,718 + HP15_3298 0.68 -0.9
3,456,840 - HP15_3298 0.79 -1.2
3,456,840 - HP15_3298 0.79 +0.4
3,456,851 - HP15_3298 0.80 +0.0
3,456,851 - HP15_3298 0.80 +1.3
3,456,853 + HP15_3298 0.80 +0.9
3,456,861 - HP15_3298 0.81 -0.1
3,456,920 + HP15_3298 0.87 +0.3
3,456,928 - HP15_3298 0.87 -1.5
3,456,977 + +1.0
3,457,197 + -0.4
3,457,414 + HP15_3299 0.32 +0.2
3,457,438 + HP15_3299 0.35 -0.4
3,457,488 - HP15_3299 0.41 +0.4
3,457,579 + HP15_3299 0.52 +0.9
3,457,579 + HP15_3299 0.52 -0.3
3,457,623 - HP15_3299 0.57 +0.7
3,457,634 - HP15_3299 0.58 +0.0
3,457,670 - HP15_3299 0.62 +0.4
3,457,691 - HP15_3299 0.65 -1.3
3,457,716 - HP15_3299 0.68 +0.8
3,457,753 - HP15_3299 0.72 +0.4
3,457,775 - HP15_3299 0.75 -2.0
3,457,939 - +0.0
3,457,945 + +0.9
3,457,948 - -1.5
3,457,979 - -0.6
3,457,979 - -0.1
3,457,989 + +0.0
3,458,014 + -0.2
3,458,053 + +0.3
3,458,053 + +0.1
3,458,053 + +0.5

Or see this region's nucleotide sequence