Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3297 and HP15_3298 are separated by 11 nucleotides HP15_3298 and HP15_3299 are separated by 82 nucleotides HP15_3299 and HP15_3300 overlap by 25 nucleotides
HP15_3297: HP15_3297 - binding-protein-dependent transport systems inner membrane component, at 3,454,957 to 3,455,991
_3297
HP15_3298: HP15_3298 - glycine betaine/L-proline ABC transporter, ATPase subunit, at 3,456,003 to 3,457,061
_3298
HP15_3299: HP15_3299 - ABC transporter, periplasmic domain protein, at 3,457,144 to 3,457,986
_3299
HP15_3300: HP15_3300 - protein of unknown function, Meta and HslJ, at 3,457,962 to 3,458,915
_3300
Position (kb)
3456
3457
3458 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3455.042 kb on - strand at 3455.170 kb on + strand, within HP15_3297 at 3455.171 kb on + strand, within HP15_3297 at 3455.194 kb on + strand, within HP15_3297 at 3455.212 kb on - strand, within HP15_3297 at 3455.374 kb on - strand, within HP15_3297 at 3455.385 kb on - strand, within HP15_3297 at 3455.448 kb on - strand, within HP15_3297 at 3455.450 kb on + strand, within HP15_3297 at 3455.467 kb on + strand, within HP15_3297 at 3455.529 kb on - strand, within HP15_3297 at 3455.588 kb on - strand, within HP15_3297 at 3455.705 kb on + strand, within HP15_3297 at 3455.728 kb on + strand, within HP15_3297 at 3455.748 kb on - strand, within HP15_3297 at 3455.760 kb on + strand, within HP15_3297 at 3455.766 kb on + strand, within HP15_3297 at 3455.768 kb on - strand, within HP15_3297 at 3455.777 kb on + strand, within HP15_3297 at 3455.851 kb on + strand, within HP15_3297 at 3455.851 kb on - strand, within HP15_3297 at 3455.907 kb on + strand at 3455.974 kb on - strand at 3456.000 kb on - strand at 3456.058 kb on + strand at 3456.058 kb on + strand at 3456.138 kb on - strand, within HP15_3298 at 3456.184 kb on + strand, within HP15_3298 at 3456.217 kb on - strand, within HP15_3298 at 3456.226 kb on - strand, within HP15_3298 at 3456.383 kb on - strand, within HP15_3298 at 3456.610 kb on - strand, within HP15_3298 at 3456.648 kb on - strand, within HP15_3298 at 3456.718 kb on + strand, within HP15_3298 at 3456.840 kb on - strand, within HP15_3298 at 3456.840 kb on - strand, within HP15_3298 at 3456.851 kb on - strand, within HP15_3298 at 3456.851 kb on - strand, within HP15_3298 at 3456.853 kb on + strand, within HP15_3298 at 3456.861 kb on - strand, within HP15_3298 at 3456.920 kb on + strand, within HP15_3298 at 3456.928 kb on - strand, within HP15_3298 at 3456.977 kb on + strand at 3457.197 kb on + strand at 3457.414 kb on + strand, within HP15_3299 at 3457.438 kb on + strand, within HP15_3299 at 3457.488 kb on - strand, within HP15_3299 at 3457.579 kb on + strand, within HP15_3299 at 3457.579 kb on + strand, within HP15_3299 at 3457.623 kb on - strand, within HP15_3299 at 3457.634 kb on - strand, within HP15_3299 at 3457.670 kb on - strand, within HP15_3299 at 3457.691 kb on - strand, within HP15_3299 at 3457.716 kb on - strand, within HP15_3299 at 3457.753 kb on - strand, within HP15_3299 at 3457.775 kb on - strand, within HP15_3299 at 3457.939 kb on - strand at 3457.945 kb on + strand at 3457.948 kb on - strand at 3457.979 kb on - strand at 3457.979 kb on - strand at 3457.989 kb on + strand at 3458.014 kb on + strand at 3458.053 kb on + strand at 3458.053 kb on + strand at 3458.053 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 3,455,042 - +0.0 3,455,170 + HP15_3297 0.21 -0.5 3,455,171 + HP15_3297 0.21 -1.1 3,455,194 + HP15_3297 0.23 +1.5 3,455,212 - HP15_3297 0.25 +0.8 3,455,374 - HP15_3297 0.40 +0.2 3,455,385 - HP15_3297 0.41 +0.5 3,455,448 - HP15_3297 0.47 +0.0 3,455,450 + HP15_3297 0.48 +1.3 3,455,467 + HP15_3297 0.49 -1.9 3,455,529 - HP15_3297 0.55 +0.4 3,455,588 - HP15_3297 0.61 +0.6 3,455,705 + HP15_3297 0.72 +0.8 3,455,728 + HP15_3297 0.74 +0.9 3,455,748 - HP15_3297 0.76 +0.7 3,455,760 + HP15_3297 0.78 +0.4 3,455,766 + HP15_3297 0.78 +1.1 3,455,768 - HP15_3297 0.78 -0.1 3,455,777 + HP15_3297 0.79 +0.4 3,455,851 + HP15_3297 0.86 +0.1 3,455,851 - HP15_3297 0.86 +2.4 3,455,907 + -0.3 3,455,974 - +0.7 3,456,000 - -1.0 3,456,058 + +0.3 3,456,058 + -0.4 3,456,138 - HP15_3298 0.13 +1.4 3,456,184 + HP15_3298 0.17 +0.6 3,456,217 - HP15_3298 0.20 +1.3 3,456,226 - HP15_3298 0.21 +0.7 3,456,383 - HP15_3298 0.36 +0.0 3,456,610 - HP15_3298 0.57 +0.3 3,456,648 - HP15_3298 0.61 +0.0 3,456,718 + HP15_3298 0.68 -0.9 3,456,840 - HP15_3298 0.79 -1.2 3,456,840 - HP15_3298 0.79 +0.4 3,456,851 - HP15_3298 0.80 +0.0 3,456,851 - HP15_3298 0.80 +1.3 3,456,853 + HP15_3298 0.80 +0.9 3,456,861 - HP15_3298 0.81 -0.1 3,456,920 + HP15_3298 0.87 +0.3 3,456,928 - HP15_3298 0.87 -1.5 3,456,977 + +1.0 3,457,197 + -0.4 3,457,414 + HP15_3299 0.32 +0.2 3,457,438 + HP15_3299 0.35 -0.4 3,457,488 - HP15_3299 0.41 +0.4 3,457,579 + HP15_3299 0.52 +0.9 3,457,579 + HP15_3299 0.52 -0.3 3,457,623 - HP15_3299 0.57 +0.7 3,457,634 - HP15_3299 0.58 +0.0 3,457,670 - HP15_3299 0.62 +0.4 3,457,691 - HP15_3299 0.65 -1.3 3,457,716 - HP15_3299 0.68 +0.8 3,457,753 - HP15_3299 0.72 +0.4 3,457,775 - HP15_3299 0.75 -2.0 3,457,939 - +0.0 3,457,945 + +0.9 3,457,948 - -1.5 3,457,979 - -0.6 3,457,979 - -0.1 3,457,989 + +0.0 3,458,014 + -0.2 3,458,053 + +0.3 3,458,053 + +0.1 3,458,053 + +0.5
Or see this region's nucleotide sequence