Strain Fitness in Marinobacter adhaerens HP15 around HP15_3297

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3296 and HP15_3297 are separated by 96 nucleotidesHP15_3297 and HP15_3298 are separated by 11 nucleotides HP15_3296: HP15_3296 - glycine betaine/proline ABC transporter, periplasmic glycine betaine/proline-binding protein, at 3,453,895 to 3,454,860 _3296 HP15_3297: HP15_3297 - binding-protein-dependent transport systems inner membrane component, at 3,454,957 to 3,455,991 _3297 HP15_3298: HP15_3298 - glycine betaine/L-proline ABC transporter, ATPase subunit, at 3,456,003 to 3,457,061 _3298 Position (kb) 3454 3455 3456Strain fitness (log2 ratio) -2 -1 0 1 2at 3454.124 kb on - strand, within HP15_3296at 3454.161 kb on - strand, within HP15_3296at 3454.182 kb on + strand, within HP15_3296at 3454.190 kb on - strand, within HP15_3296at 3454.301 kb on + strand, within HP15_3296at 3454.301 kb on + strand, within HP15_3296at 3454.382 kb on + strand, within HP15_3296at 3454.390 kb on - strand, within HP15_3296at 3454.470 kb on - strand, within HP15_3296at 3454.498 kb on + strand, within HP15_3296at 3454.529 kb on - strand, within HP15_3296at 3454.535 kb on + strand, within HP15_3296at 3454.535 kb on + strand, within HP15_3296at 3454.630 kb on + strand, within HP15_3296at 3454.709 kb on - strand, within HP15_3296at 3454.751 kb on - strand, within HP15_3296at 3454.849 kb on + strandat 3454.884 kb on + strandat 3454.902 kb on - strandat 3454.925 kb on + strandat 3454.925 kb on + strandat 3454.999 kb on - strandat 3455.042 kb on - strandat 3455.170 kb on + strand, within HP15_3297at 3455.171 kb on + strand, within HP15_3297at 3455.194 kb on + strand, within HP15_3297at 3455.212 kb on - strand, within HP15_3297at 3455.374 kb on - strand, within HP15_3297at 3455.385 kb on - strand, within HP15_3297at 3455.448 kb on - strand, within HP15_3297at 3455.450 kb on + strand, within HP15_3297at 3455.467 kb on + strand, within HP15_3297at 3455.529 kb on - strand, within HP15_3297at 3455.588 kb on - strand, within HP15_3297at 3455.705 kb on + strand, within HP15_3297at 3455.728 kb on + strand, within HP15_3297at 3455.748 kb on - strand, within HP15_3297at 3455.760 kb on + strand, within HP15_3297at 3455.766 kb on + strand, within HP15_3297at 3455.768 kb on - strand, within HP15_3297at 3455.777 kb on + strand, within HP15_3297at 3455.851 kb on + strand, within HP15_3297at 3455.851 kb on - strand, within HP15_3297at 3455.907 kb on + strandat 3455.974 kb on - strandat 3456.000 kb on - strandat 3456.058 kb on + strandat 3456.058 kb on + strandat 3456.138 kb on - strand, within HP15_3298at 3456.184 kb on + strand, within HP15_3298at 3456.217 kb on - strand, within HP15_3298at 3456.226 kb on - strand, within HP15_3298at 3456.383 kb on - strand, within HP15_3298at 3456.610 kb on - strand, within HP15_3298at 3456.648 kb on - strand, within HP15_3298at 3456.718 kb on + strand, within HP15_3298at 3456.840 kb on - strand, within HP15_3298at 3456.840 kb on - strand, within HP15_3298at 3456.851 kb on - strand, within HP15_3298at 3456.851 kb on - strand, within HP15_3298at 3456.853 kb on + strand, within HP15_3298at 3456.861 kb on - strand, within HP15_3298at 3456.920 kb on + strand, within HP15_3298at 3456.928 kb on - strand, within HP15_3298at 3456.977 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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3,454,124 - HP15_3296 0.24 +0.2
3,454,161 - HP15_3296 0.28 +0.2
3,454,182 + HP15_3296 0.30 +0.7
3,454,190 - HP15_3296 0.31 -0.3
3,454,301 + HP15_3296 0.42 +0.6
3,454,301 + HP15_3296 0.42 -0.8
3,454,382 + HP15_3296 0.50 -0.7
3,454,390 - HP15_3296 0.51 +0.6
3,454,470 - HP15_3296 0.60 -0.4
3,454,498 + HP15_3296 0.62 +0.3
3,454,529 - HP15_3296 0.66 +0.4
3,454,535 + HP15_3296 0.66 +0.6
3,454,535 + HP15_3296 0.66 +0.4
3,454,630 + HP15_3296 0.76 -0.0
3,454,709 - HP15_3296 0.84 -0.7
3,454,751 - HP15_3296 0.89 +0.6
3,454,849 + +0.1
3,454,884 + -1.4
3,454,902 - +0.1
3,454,925 + -0.4
3,454,925 + +0.2
3,454,999 - +0.2
3,455,042 - +0.0
3,455,170 + HP15_3297 0.21 -0.5
3,455,171 + HP15_3297 0.21 -1.1
3,455,194 + HP15_3297 0.23 +1.5
3,455,212 - HP15_3297 0.25 +0.8
3,455,374 - HP15_3297 0.40 +0.2
3,455,385 - HP15_3297 0.41 +0.5
3,455,448 - HP15_3297 0.47 +0.0
3,455,450 + HP15_3297 0.48 +1.3
3,455,467 + HP15_3297 0.49 -1.9
3,455,529 - HP15_3297 0.55 +0.4
3,455,588 - HP15_3297 0.61 +0.6
3,455,705 + HP15_3297 0.72 +0.8
3,455,728 + HP15_3297 0.74 +0.9
3,455,748 - HP15_3297 0.76 +0.7
3,455,760 + HP15_3297 0.78 +0.4
3,455,766 + HP15_3297 0.78 +1.1
3,455,768 - HP15_3297 0.78 -0.1
3,455,777 + HP15_3297 0.79 +0.4
3,455,851 + HP15_3297 0.86 +0.1
3,455,851 - HP15_3297 0.86 +2.4
3,455,907 + -0.3
3,455,974 - +0.7
3,456,000 - -1.0
3,456,058 + +0.3
3,456,058 + -0.4
3,456,138 - HP15_3298 0.13 +1.4
3,456,184 + HP15_3298 0.17 +0.6
3,456,217 - HP15_3298 0.20 +1.3
3,456,226 - HP15_3298 0.21 +0.7
3,456,383 - HP15_3298 0.36 +0.0
3,456,610 - HP15_3298 0.57 +0.3
3,456,648 - HP15_3298 0.61 +0.0
3,456,718 + HP15_3298 0.68 -0.9
3,456,840 - HP15_3298 0.79 -1.2
3,456,840 - HP15_3298 0.79 +0.4
3,456,851 - HP15_3298 0.80 +0.0
3,456,851 - HP15_3298 0.80 +1.3
3,456,853 + HP15_3298 0.80 +0.9
3,456,861 - HP15_3298 0.81 -0.1
3,456,920 + HP15_3298 0.87 +0.3
3,456,928 - HP15_3298 0.87 -1.5
3,456,977 + +1.0

Or see this region's nucleotide sequence