Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3296 and HP15_3297 are separated by 96 nucleotides HP15_3297 and HP15_3298 are separated by 11 nucleotides
HP15_3296: HP15_3296 - glycine betaine/proline ABC transporter, periplasmic glycine betaine/proline-binding protein, at 3,453,895 to 3,454,860
_3296
HP15_3297: HP15_3297 - binding-protein-dependent transport systems inner membrane component, at 3,454,957 to 3,455,991
_3297
HP15_3298: HP15_3298 - glycine betaine/L-proline ABC transporter, ATPase subunit, at 3,456,003 to 3,457,061
_3298
Position (kb)
3454
3455
3456 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3454.124 kb on - strand, within HP15_3296 at 3454.161 kb on - strand, within HP15_3296 at 3454.182 kb on + strand, within HP15_3296 at 3454.190 kb on - strand, within HP15_3296 at 3454.301 kb on + strand, within HP15_3296 at 3454.301 kb on + strand, within HP15_3296 at 3454.382 kb on + strand, within HP15_3296 at 3454.390 kb on - strand, within HP15_3296 at 3454.470 kb on - strand, within HP15_3296 at 3454.498 kb on + strand, within HP15_3296 at 3454.529 kb on - strand, within HP15_3296 at 3454.535 kb on + strand, within HP15_3296 at 3454.535 kb on + strand, within HP15_3296 at 3454.630 kb on + strand, within HP15_3296 at 3454.709 kb on - strand, within HP15_3296 at 3454.751 kb on - strand, within HP15_3296 at 3454.849 kb on + strand at 3454.884 kb on + strand at 3454.902 kb on - strand at 3454.925 kb on + strand at 3454.925 kb on + strand at 3454.999 kb on - strand at 3455.042 kb on - strand at 3455.170 kb on + strand, within HP15_3297 at 3455.171 kb on + strand, within HP15_3297 at 3455.194 kb on + strand, within HP15_3297 at 3455.212 kb on - strand, within HP15_3297 at 3455.374 kb on - strand, within HP15_3297 at 3455.385 kb on - strand, within HP15_3297 at 3455.448 kb on - strand, within HP15_3297 at 3455.450 kb on + strand, within HP15_3297 at 3455.467 kb on + strand, within HP15_3297 at 3455.529 kb on - strand, within HP15_3297 at 3455.588 kb on - strand, within HP15_3297 at 3455.705 kb on + strand, within HP15_3297 at 3455.728 kb on + strand, within HP15_3297 at 3455.748 kb on - strand, within HP15_3297 at 3455.760 kb on + strand, within HP15_3297 at 3455.766 kb on + strand, within HP15_3297 at 3455.768 kb on - strand, within HP15_3297 at 3455.777 kb on + strand, within HP15_3297 at 3455.851 kb on + strand, within HP15_3297 at 3455.851 kb on - strand, within HP15_3297 at 3455.907 kb on + strand at 3455.974 kb on - strand at 3456.000 kb on - strand at 3456.058 kb on + strand at 3456.058 kb on + strand at 3456.138 kb on - strand, within HP15_3298 at 3456.184 kb on + strand, within HP15_3298 at 3456.217 kb on - strand, within HP15_3298 at 3456.226 kb on - strand, within HP15_3298 at 3456.383 kb on - strand, within HP15_3298 at 3456.610 kb on - strand, within HP15_3298 at 3456.648 kb on - strand, within HP15_3298 at 3456.718 kb on + strand, within HP15_3298 at 3456.840 kb on - strand, within HP15_3298 at 3456.840 kb on - strand, within HP15_3298 at 3456.851 kb on - strand, within HP15_3298 at 3456.851 kb on - strand, within HP15_3298 at 3456.853 kb on + strand, within HP15_3298 at 3456.861 kb on - strand, within HP15_3298 at 3456.920 kb on + strand, within HP15_3298 at 3456.928 kb on - strand, within HP15_3298 at 3456.977 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 3,454,124 - HP15_3296 0.24 +0.2 3,454,161 - HP15_3296 0.28 +0.2 3,454,182 + HP15_3296 0.30 +0.7 3,454,190 - HP15_3296 0.31 -0.3 3,454,301 + HP15_3296 0.42 +0.6 3,454,301 + HP15_3296 0.42 -0.8 3,454,382 + HP15_3296 0.50 -0.7 3,454,390 - HP15_3296 0.51 +0.6 3,454,470 - HP15_3296 0.60 -0.4 3,454,498 + HP15_3296 0.62 +0.3 3,454,529 - HP15_3296 0.66 +0.4 3,454,535 + HP15_3296 0.66 +0.6 3,454,535 + HP15_3296 0.66 +0.4 3,454,630 + HP15_3296 0.76 -0.0 3,454,709 - HP15_3296 0.84 -0.7 3,454,751 - HP15_3296 0.89 +0.6 3,454,849 + +0.1 3,454,884 + -1.4 3,454,902 - +0.1 3,454,925 + -0.4 3,454,925 + +0.2 3,454,999 - +0.2 3,455,042 - +0.0 3,455,170 + HP15_3297 0.21 -0.5 3,455,171 + HP15_3297 0.21 -1.1 3,455,194 + HP15_3297 0.23 +1.5 3,455,212 - HP15_3297 0.25 +0.8 3,455,374 - HP15_3297 0.40 +0.2 3,455,385 - HP15_3297 0.41 +0.5 3,455,448 - HP15_3297 0.47 +0.0 3,455,450 + HP15_3297 0.48 +1.3 3,455,467 + HP15_3297 0.49 -1.9 3,455,529 - HP15_3297 0.55 +0.4 3,455,588 - HP15_3297 0.61 +0.6 3,455,705 + HP15_3297 0.72 +0.8 3,455,728 + HP15_3297 0.74 +0.9 3,455,748 - HP15_3297 0.76 +0.7 3,455,760 + HP15_3297 0.78 +0.4 3,455,766 + HP15_3297 0.78 +1.1 3,455,768 - HP15_3297 0.78 -0.1 3,455,777 + HP15_3297 0.79 +0.4 3,455,851 + HP15_3297 0.86 +0.1 3,455,851 - HP15_3297 0.86 +2.4 3,455,907 + -0.3 3,455,974 - +0.7 3,456,000 - -1.0 3,456,058 + +0.3 3,456,058 + -0.4 3,456,138 - HP15_3298 0.13 +1.4 3,456,184 + HP15_3298 0.17 +0.6 3,456,217 - HP15_3298 0.20 +1.3 3,456,226 - HP15_3298 0.21 +0.7 3,456,383 - HP15_3298 0.36 +0.0 3,456,610 - HP15_3298 0.57 +0.3 3,456,648 - HP15_3298 0.61 +0.0 3,456,718 + HP15_3298 0.68 -0.9 3,456,840 - HP15_3298 0.79 -1.2 3,456,840 - HP15_3298 0.79 +0.4 3,456,851 - HP15_3298 0.80 +0.0 3,456,851 - HP15_3298 0.80 +1.3 3,456,853 + HP15_3298 0.80 +0.9 3,456,861 - HP15_3298 0.81 -0.1 3,456,920 + HP15_3298 0.87 +0.3 3,456,928 - HP15_3298 0.87 -1.5 3,456,977 + +1.0
Or see this region's nucleotide sequence