Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3295 and HP15_3296 are separated by 299 nucleotides HP15_3296 and HP15_3297 are separated by 96 nucleotides
HP15_3295: HP15_3295 - zinc carboxypeptidase-related protein, at 3,452,495 to 3,453,595
_3295
HP15_3296: HP15_3296 - glycine betaine/proline ABC transporter, periplasmic glycine betaine/proline-binding protein, at 3,453,895 to 3,454,860
_3296
HP15_3297: HP15_3297 - binding-protein-dependent transport systems inner membrane component, at 3,454,957 to 3,455,991
_3297
Position (kb)
3453
3454
3455 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3452.915 kb on - strand, within HP15_3295 at 3452.982 kb on - strand, within HP15_3295 at 3453.052 kb on + strand, within HP15_3295 at 3453.052 kb on + strand, within HP15_3295 at 3453.060 kb on - strand, within HP15_3295 at 3453.060 kb on - strand, within HP15_3295 at 3453.060 kb on - strand, within HP15_3295 at 3453.060 kb on - strand, within HP15_3295 at 3453.060 kb on - strand, within HP15_3295 at 3453.060 kb on - strand, within HP15_3295 at 3453.060 kb on - strand, within HP15_3295 at 3453.060 kb on - strand, within HP15_3295 at 3453.154 kb on + strand, within HP15_3295 at 3453.154 kb on + strand, within HP15_3295 at 3453.154 kb on + strand, within HP15_3295 at 3453.202 kb on + strand, within HP15_3295 at 3453.202 kb on + strand, within HP15_3295 at 3453.210 kb on - strand, within HP15_3295 at 3453.210 kb on - strand, within HP15_3295 at 3453.393 kb on + strand, within HP15_3295 at 3453.439 kb on + strand, within HP15_3295 at 3453.515 kb on - strand at 3453.528 kb on + strand at 3453.586 kb on + strand at 3453.591 kb on + strand at 3453.594 kb on - strand at 3453.599 kb on - strand at 3453.749 kb on + strand at 3453.802 kb on + strand at 3453.874 kb on + strand at 3453.919 kb on - strand at 3453.929 kb on - strand at 3453.933 kb on + strand at 3454.124 kb on - strand, within HP15_3296 at 3454.161 kb on - strand, within HP15_3296 at 3454.182 kb on + strand, within HP15_3296 at 3454.190 kb on - strand, within HP15_3296 at 3454.301 kb on + strand, within HP15_3296 at 3454.301 kb on + strand, within HP15_3296 at 3454.382 kb on + strand, within HP15_3296 at 3454.390 kb on - strand, within HP15_3296 at 3454.470 kb on - strand, within HP15_3296 at 3454.498 kb on + strand, within HP15_3296 at 3454.529 kb on - strand, within HP15_3296 at 3454.535 kb on + strand, within HP15_3296 at 3454.535 kb on + strand, within HP15_3296 at 3454.630 kb on + strand, within HP15_3296 at 3454.709 kb on - strand, within HP15_3296 at 3454.751 kb on - strand, within HP15_3296 at 3454.849 kb on + strand at 3454.884 kb on + strand at 3454.902 kb on - strand at 3454.925 kb on + strand at 3454.925 kb on + strand at 3454.999 kb on - strand at 3455.042 kb on - strand at 3455.170 kb on + strand, within HP15_3297 at 3455.171 kb on + strand, within HP15_3297 at 3455.194 kb on + strand, within HP15_3297 at 3455.212 kb on - strand, within HP15_3297 at 3455.374 kb on - strand, within HP15_3297 at 3455.385 kb on - strand, within HP15_3297 at 3455.448 kb on - strand, within HP15_3297 at 3455.450 kb on + strand, within HP15_3297 at 3455.467 kb on + strand, within HP15_3297 at 3455.529 kb on - strand, within HP15_3297 at 3455.588 kb on - strand, within HP15_3297 at 3455.705 kb on + strand, within HP15_3297 at 3455.728 kb on + strand, within HP15_3297 at 3455.748 kb on - strand, within HP15_3297 at 3455.760 kb on + strand, within HP15_3297 at 3455.766 kb on + strand, within HP15_3297 at 3455.768 kb on - strand, within HP15_3297 at 3455.777 kb on + strand, within HP15_3297 at 3455.851 kb on + strand, within HP15_3297 at 3455.851 kb on - strand, within HP15_3297
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 3,452,915 - HP15_3295 0.38 -0.4 3,452,982 - HP15_3295 0.44 +0.1 3,453,052 + HP15_3295 0.51 +1.7 3,453,052 + HP15_3295 0.51 +0.1 3,453,060 - HP15_3295 0.51 +1.4 3,453,060 - HP15_3295 0.51 +0.4 3,453,060 - HP15_3295 0.51 +0.9 3,453,060 - HP15_3295 0.51 -0.3 3,453,060 - HP15_3295 0.51 -0.6 3,453,060 - HP15_3295 0.51 -0.6 3,453,060 - HP15_3295 0.51 +0.0 3,453,060 - HP15_3295 0.51 +0.9 3,453,154 + HP15_3295 0.60 -0.9 3,453,154 + HP15_3295 0.60 -1.8 3,453,154 + HP15_3295 0.60 -0.8 3,453,202 + HP15_3295 0.64 +0.2 3,453,202 + HP15_3295 0.64 +0.8 3,453,210 - HP15_3295 0.65 +0.1 3,453,210 - HP15_3295 0.65 +1.0 3,453,393 + HP15_3295 0.82 -0.2 3,453,439 + HP15_3295 0.86 +1.1 3,453,515 - +0.7 3,453,528 + -0.2 3,453,586 + -1.7 3,453,591 + -2.6 3,453,594 - -0.2 3,453,599 - -0.0 3,453,749 + -0.0 3,453,802 + +0.6 3,453,874 + +0.6 3,453,919 - +0.7 3,453,929 - +1.0 3,453,933 + +1.1 3,454,124 - HP15_3296 0.24 +0.2 3,454,161 - HP15_3296 0.28 +0.2 3,454,182 + HP15_3296 0.30 +0.7 3,454,190 - HP15_3296 0.31 -0.3 3,454,301 + HP15_3296 0.42 +0.6 3,454,301 + HP15_3296 0.42 -0.8 3,454,382 + HP15_3296 0.50 -0.7 3,454,390 - HP15_3296 0.51 +0.6 3,454,470 - HP15_3296 0.60 -0.4 3,454,498 + HP15_3296 0.62 +0.3 3,454,529 - HP15_3296 0.66 +0.4 3,454,535 + HP15_3296 0.66 +0.6 3,454,535 + HP15_3296 0.66 +0.4 3,454,630 + HP15_3296 0.76 -0.0 3,454,709 - HP15_3296 0.84 -0.7 3,454,751 - HP15_3296 0.89 +0.6 3,454,849 + +0.1 3,454,884 + -1.4 3,454,902 - +0.1 3,454,925 + -0.4 3,454,925 + +0.2 3,454,999 - +0.2 3,455,042 - +0.0 3,455,170 + HP15_3297 0.21 -0.5 3,455,171 + HP15_3297 0.21 -1.1 3,455,194 + HP15_3297 0.23 +1.5 3,455,212 - HP15_3297 0.25 +0.8 3,455,374 - HP15_3297 0.40 +0.2 3,455,385 - HP15_3297 0.41 +0.5 3,455,448 - HP15_3297 0.47 +0.0 3,455,450 + HP15_3297 0.48 +1.3 3,455,467 + HP15_3297 0.49 -1.9 3,455,529 - HP15_3297 0.55 +0.4 3,455,588 - HP15_3297 0.61 +0.6 3,455,705 + HP15_3297 0.72 +0.8 3,455,728 + HP15_3297 0.74 +0.9 3,455,748 - HP15_3297 0.76 +0.7 3,455,760 + HP15_3297 0.78 +0.4 3,455,766 + HP15_3297 0.78 +1.1 3,455,768 - HP15_3297 0.78 -0.1 3,455,777 + HP15_3297 0.79 +0.4 3,455,851 + HP15_3297 0.86 +0.1 3,455,851 - HP15_3297 0.86 +2.4
Or see this region's nucleotide sequence