Strain Fitness in Marinobacter adhaerens HP15 around HP15_3254

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3252 and HP15_3253 are separated by 157 nucleotidesHP15_3253 and HP15_3254 are separated by 244 nucleotidesHP15_3254 and HP15_3255 are separated by 99 nucleotides HP15_3252: HP15_3252 - alkaline phosphatase-like protein, at 3,406,395 to 3,408,119 _3252 HP15_3253: HP15_3253 - ferritin-like DNA-binding protein, at 3,408,277 to 3,408,750 _3253 HP15_3254: HP15_3254 - hypothetical protein, at 3,408,995 to 3,409,174 _3254 HP15_3255: HP15_3255 - mercuric ion reductase, at 3,409,274 to 3,410,716 _3255 Position (kb) 3408 3409 3410Strain fitness (log2 ratio) -1 0 1at 3407.999 kb on + strandat 3408.066 kb on + strandat 3408.099 kb on - strandat 3408.103 kb on + strandat 3408.301 kb on + strandat 3408.337 kb on - strand, within HP15_3253at 3408.348 kb on - strand, within HP15_3253at 3408.371 kb on + strand, within HP15_3253at 3409.006 kb on + strandat 3409.101 kb on + strand, within HP15_3254at 3409.101 kb on + strand, within HP15_3254at 3409.109 kb on - strand, within HP15_3254at 3409.254 kb on - strandat 3409.257 kb on - strandat 3409.296 kb on + strandat 3409.301 kb on + strandat 3409.304 kb on - strandat 3409.366 kb on - strandat 3409.480 kb on + strand, within HP15_3255at 3409.521 kb on + strand, within HP15_3255at 3409.562 kb on + strand, within HP15_3255at 3409.570 kb on + strand, within HP15_3255at 3409.623 kb on - strand, within HP15_3255at 3409.725 kb on - strand, within HP15_3255at 3409.778 kb on + strand, within HP15_3255at 3409.816 kb on - strand, within HP15_3255at 3409.820 kb on + strand, within HP15_3255at 3409.820 kb on + strand, within HP15_3255at 3409.825 kb on + strand, within HP15_3255at 3409.828 kb on - strand, within HP15_3255at 3409.828 kb on - strand, within HP15_3255at 3409.833 kb on - strand, within HP15_3255at 3409.976 kb on + strand, within HP15_3255at 3409.999 kb on - strand, within HP15_3255at 3410.089 kb on + strand, within HP15_3255at 3410.089 kb on + strand, within HP15_3255at 3410.097 kb on - strand, within HP15_3255at 3410.144 kb on + strand, within HP15_3255at 3410.169 kb on - strand, within HP15_3255

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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3,407,999 + +0.0
3,408,066 + +0.1
3,408,099 - -0.2
3,408,103 + -0.7
3,408,301 + +0.6
3,408,337 - HP15_3253 0.13 +1.5
3,408,348 - HP15_3253 0.15 -1.1
3,408,371 + HP15_3253 0.20 -1.1
3,409,006 + +1.1
3,409,101 + HP15_3254 0.59 -0.6
3,409,101 + HP15_3254 0.59 -1.1
3,409,109 - HP15_3254 0.63 -0.4
3,409,254 - +0.3
3,409,257 - -0.2
3,409,296 + +0.1
3,409,301 + +0.3
3,409,304 - -0.1
3,409,366 - -0.7
3,409,480 + HP15_3255 0.14 +0.5
3,409,521 + HP15_3255 0.17 -0.3
3,409,562 + HP15_3255 0.20 +1.4
3,409,570 + HP15_3255 0.21 +0.4
3,409,623 - HP15_3255 0.24 -1.6
3,409,725 - HP15_3255 0.31 +0.5
3,409,778 + HP15_3255 0.35 +0.9
3,409,816 - HP15_3255 0.38 +1.7
3,409,820 + HP15_3255 0.38 +0.3
3,409,820 + HP15_3255 0.38 -0.5
3,409,825 + HP15_3255 0.38 -0.1
3,409,828 - HP15_3255 0.38 +0.3
3,409,828 - HP15_3255 0.38 -0.1
3,409,833 - HP15_3255 0.39 -0.0
3,409,976 + HP15_3255 0.49 -0.2
3,409,999 - HP15_3255 0.50 +1.0
3,410,089 + HP15_3255 0.56 -0.5
3,410,089 + HP15_3255 0.56 +0.9
3,410,097 - HP15_3255 0.57 +0.4
3,410,144 + HP15_3255 0.60 +0.3
3,410,169 - HP15_3255 0.62 +0.4

Or see this region's nucleotide sequence