Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3252 and HP15_3253 are separated by 157 nucleotides HP15_3253 and HP15_3254 are separated by 244 nucleotides HP15_3254 and HP15_3255 are separated by 99 nucleotides
HP15_3252: HP15_3252 - alkaline phosphatase-like protein, at 3,406,395 to 3,408,119
_3252
HP15_3253: HP15_3253 - ferritin-like DNA-binding protein, at 3,408,277 to 3,408,750
_3253
HP15_3254: HP15_3254 - hypothetical protein, at 3,408,995 to 3,409,174
_3254
HP15_3255: HP15_3255 - mercuric ion reductase, at 3,409,274 to 3,410,716
_3255
Position (kb)
3408
3409
3410 Strain fitness (log2 ratio)
-1
0
1 at 3407.999 kb on + strand at 3408.066 kb on + strand at 3408.099 kb on - strand at 3408.103 kb on + strand at 3408.301 kb on + strand at 3408.337 kb on - strand, within HP15_3253 at 3408.348 kb on - strand, within HP15_3253 at 3408.371 kb on + strand, within HP15_3253 at 3409.006 kb on + strand at 3409.101 kb on + strand, within HP15_3254 at 3409.101 kb on + strand, within HP15_3254 at 3409.109 kb on - strand, within HP15_3254 at 3409.254 kb on - strand at 3409.257 kb on - strand at 3409.296 kb on + strand at 3409.301 kb on + strand at 3409.304 kb on - strand at 3409.366 kb on - strand at 3409.480 kb on + strand, within HP15_3255 at 3409.521 kb on + strand, within HP15_3255 at 3409.562 kb on + strand, within HP15_3255 at 3409.570 kb on + strand, within HP15_3255 at 3409.623 kb on - strand, within HP15_3255 at 3409.725 kb on - strand, within HP15_3255 at 3409.778 kb on + strand, within HP15_3255 at 3409.816 kb on - strand, within HP15_3255 at 3409.820 kb on + strand, within HP15_3255 at 3409.820 kb on + strand, within HP15_3255 at 3409.825 kb on + strand, within HP15_3255 at 3409.828 kb on - strand, within HP15_3255 at 3409.828 kb on - strand, within HP15_3255 at 3409.833 kb on - strand, within HP15_3255 at 3409.976 kb on + strand, within HP15_3255 at 3409.999 kb on - strand, within HP15_3255 at 3410.089 kb on + strand, within HP15_3255 at 3410.089 kb on + strand, within HP15_3255 at 3410.097 kb on - strand, within HP15_3255 at 3410.144 kb on + strand, within HP15_3255 at 3410.169 kb on - strand, within HP15_3255
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 3,407,999 + +0.0 3,408,066 + +0.1 3,408,099 - -0.2 3,408,103 + -0.7 3,408,301 + +0.6 3,408,337 - HP15_3253 0.13 +1.5 3,408,348 - HP15_3253 0.15 -1.1 3,408,371 + HP15_3253 0.20 -1.1 3,409,006 + +1.1 3,409,101 + HP15_3254 0.59 -0.6 3,409,101 + HP15_3254 0.59 -1.1 3,409,109 - HP15_3254 0.63 -0.4 3,409,254 - +0.3 3,409,257 - -0.2 3,409,296 + +0.1 3,409,301 + +0.3 3,409,304 - -0.1 3,409,366 - -0.7 3,409,480 + HP15_3255 0.14 +0.5 3,409,521 + HP15_3255 0.17 -0.3 3,409,562 + HP15_3255 0.20 +1.4 3,409,570 + HP15_3255 0.21 +0.4 3,409,623 - HP15_3255 0.24 -1.6 3,409,725 - HP15_3255 0.31 +0.5 3,409,778 + HP15_3255 0.35 +0.9 3,409,816 - HP15_3255 0.38 +1.7 3,409,820 + HP15_3255 0.38 +0.3 3,409,820 + HP15_3255 0.38 -0.5 3,409,825 + HP15_3255 0.38 -0.1 3,409,828 - HP15_3255 0.38 +0.3 3,409,828 - HP15_3255 0.38 -0.1 3,409,833 - HP15_3255 0.39 -0.0 3,409,976 + HP15_3255 0.49 -0.2 3,409,999 - HP15_3255 0.50 +1.0 3,410,089 + HP15_3255 0.56 -0.5 3,410,089 + HP15_3255 0.56 +0.9 3,410,097 - HP15_3255 0.57 +0.4 3,410,144 + HP15_3255 0.60 +0.3 3,410,169 - HP15_3255 0.62 +0.4
Or see this region's nucleotide sequence