Strain Fitness in Marinobacter adhaerens HP15 around HP15_3248

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3247 and HP15_3248 are separated by 102 nucleotidesHP15_3248 and HP15_3249 overlap by 4 nucleotides HP15_3247: HP15_3247 - twin-arginine translocation pathway signal, at 3,400,653 to 3,401,729 _3247 HP15_3248: HP15_3248 - tripartite ATP-independent periplasmic transporter, DctQ component, at 3,401,832 to 3,402,377 _3248 HP15_3249: HP15_3249 - TRAP-type mannitol/chloroaromatic compound transport system, large permease component, at 3,402,374 to 3,403,669 _3249 Position (kb) 3401 3402 3403Strain fitness (log2 ratio) -3 -2 -1 0 1at 3400.898 kb on + strand, within HP15_3247at 3400.906 kb on - strand, within HP15_3247at 3400.911 kb on - strand, within HP15_3247at 3400.921 kb on - strand, within HP15_3247at 3400.935 kb on + strand, within HP15_3247at 3401.114 kb on - strand, within HP15_3247at 3401.114 kb on - strand, within HP15_3247at 3401.243 kb on + strand, within HP15_3247at 3401.243 kb on + strand, within HP15_3247at 3401.251 kb on - strand, within HP15_3247at 3401.253 kb on + strand, within HP15_3247at 3401.277 kb on - strand, within HP15_3247at 3401.293 kb on + strand, within HP15_3247at 3401.293 kb on + strand, within HP15_3247at 3401.354 kb on + strand, within HP15_3247at 3401.510 kb on + strand, within HP15_3247at 3401.518 kb on - strand, within HP15_3247at 3401.605 kb on - strand, within HP15_3247at 3401.656 kb on + strandat 3401.702 kb on + strandat 3401.722 kb on - strandat 3401.745 kb on - strandat 3401.783 kb on - strandat 3401.882 kb on - strandat 3402.107 kb on + strand, within HP15_3248at 3402.214 kb on - strand, within HP15_3248at 3402.268 kb on + strand, within HP15_3248at 3402.313 kb on - strand, within HP15_3248at 3402.340 kb on - strandat 3402.341 kb on + strandat 3402.341 kb on + strandat 3402.349 kb on - strandat 3402.442 kb on - strandat 3402.668 kb on + strand, within HP15_3249at 3402.678 kb on + strand, within HP15_3249at 3402.702 kb on + strand, within HP15_3249at 3402.907 kb on - strand, within HP15_3249at 3402.917 kb on - strand, within HP15_3249at 3403.033 kb on + strand, within HP15_3249at 3403.070 kb on + strand, within HP15_3249at 3403.118 kb on + strand, within HP15_3249at 3403.231 kb on - strand, within HP15_3249at 3403.240 kb on - strand, within HP15_3249at 3403.242 kb on + strand, within HP15_3249at 3403.265 kb on - strand, within HP15_3249at 3403.275 kb on - strand, within HP15_3249at 3403.348 kb on - strand, within HP15_3249

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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3,400,898 + HP15_3247 0.23 -0.4
3,400,906 - HP15_3247 0.23 +0.3
3,400,911 - HP15_3247 0.24 -0.7
3,400,921 - HP15_3247 0.25 -0.1
3,400,935 + HP15_3247 0.26 -0.1
3,401,114 - HP15_3247 0.43 -1.6
3,401,114 - HP15_3247 0.43 +0.3
3,401,243 + HP15_3247 0.55 +0.2
3,401,243 + HP15_3247 0.55 -0.8
3,401,251 - HP15_3247 0.56 -0.6
3,401,253 + HP15_3247 0.56 -1.0
3,401,277 - HP15_3247 0.58 -0.3
3,401,293 + HP15_3247 0.59 +0.1
3,401,293 + HP15_3247 0.59 -0.2
3,401,354 + HP15_3247 0.65 -0.1
3,401,510 + HP15_3247 0.80 -0.1
3,401,518 - HP15_3247 0.80 -1.9
3,401,605 - HP15_3247 0.88 -1.8
3,401,656 + +0.6
3,401,702 + +0.0
3,401,722 - -0.6
3,401,745 - +0.2
3,401,783 - -1.8
3,401,882 - -0.8
3,402,107 + HP15_3248 0.50 -0.4
3,402,214 - HP15_3248 0.70 -2.1
3,402,268 + HP15_3248 0.80 +0.4
3,402,313 - HP15_3248 0.88 -1.2
3,402,340 - -3.2
3,402,341 + -0.4
3,402,341 + -1.0
3,402,349 - +0.1
3,402,442 - -0.6
3,402,668 + HP15_3249 0.23 -1.1
3,402,678 + HP15_3249 0.23 +0.0
3,402,702 + HP15_3249 0.25 +1.7
3,402,907 - HP15_3249 0.41 +0.1
3,402,917 - HP15_3249 0.42 -1.1
3,403,033 + HP15_3249 0.51 +0.1
3,403,070 + HP15_3249 0.54 -0.5
3,403,118 + HP15_3249 0.57 -1.8
3,403,231 - HP15_3249 0.66 +0.1
3,403,240 - HP15_3249 0.67 -0.2
3,403,242 + HP15_3249 0.67 -0.5
3,403,265 - HP15_3249 0.69 +0.3
3,403,275 - HP15_3249 0.70 -0.7
3,403,348 - HP15_3249 0.75 -1.7

Or see this region's nucleotide sequence