Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3275

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3273 and Psest_3274 overlap by 4 nucleotidesPsest_3274 and Psest_3275 are separated by 48 nucleotidesPsest_3275 and Psest_3276 are separated by 14 nucleotidesPsest_3276 and Psest_3277 are separated by 88 nucleotides Psest_3273: Psest_3273 - Phosphoheptose isomerase, at 3,442,523 to 3,443,116 _3273 Psest_3274: Psest_3274 - Predicted periplasmic or secreted lipoprotein, at 3,443,113 to 3,443,688 _3274 Psest_3275: Psest_3275 - Stringent starvation protein B, at 3,443,737 to 3,444,141 _3275 Psest_3276: Psest_3276 - Glutathione S-transferase, at 3,444,156 to 3,444,773 _3276 Psest_3277: Psest_3277 - Cytochrome c1, at 3,444,862 to 3,445,641 _3277 Position (kb) 3443 3444 3445Strain fitness (log2 ratio) -1 0 1at 3443.739 kb on - strandat 3443.739 kb on - strandat 3443.739 kb on - strandat 3443.853 kb on + strand, within Psest_3275at 3443.876 kb on + strand, within Psest_3275at 3443.876 kb on + strand, within Psest_3275at 3443.876 kb on + strand, within Psest_3275at 3443.876 kb on + strand, within Psest_3275at 3443.877 kb on - strand, within Psest_3275at 3443.877 kb on - strand, within Psest_3275at 3443.946 kb on + strand, within Psest_3275at 3443.946 kb on + strand, within Psest_3275at 3443.947 kb on - strand, within Psest_3275at 3443.947 kb on - strand, within Psest_3275at 3443.949 kb on + strand, within Psest_3275at 3443.950 kb on - strand, within Psest_3275at 3444.005 kb on - strand, within Psest_3275at 3444.005 kb on - strand, within Psest_3275at 3444.005 kb on - strand, within Psest_3275at 3444.005 kb on - strand, within Psest_3275at 3444.122 kb on + strandat 3444.768 kb on - strandat 3444.774 kb on - strandat 3444.793 kb on + strandat 3444.839 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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3,443,739 - +0.5
3,443,739 - -0.2
3,443,739 - +1.0
3,443,853 + Psest_3275 0.29 -1.0
3,443,876 + Psest_3275 0.34 -0.5
3,443,876 + Psest_3275 0.34 +0.0
3,443,876 + Psest_3275 0.34 +0.5
3,443,876 + Psest_3275 0.34 -1.6
3,443,877 - Psest_3275 0.35 +0.0
3,443,877 - Psest_3275 0.35 +0.5
3,443,946 + Psest_3275 0.52 -0.9
3,443,946 + Psest_3275 0.52 +0.3
3,443,947 - Psest_3275 0.52 -1.1
3,443,947 - Psest_3275 0.52 -0.5
3,443,949 + Psest_3275 0.52 +0.3
3,443,950 - Psest_3275 0.53 -0.7
3,444,005 - Psest_3275 0.66 -0.1
3,444,005 - Psest_3275 0.66 -1.0
3,444,005 - Psest_3275 0.66 -1.5
3,444,005 - Psest_3275 0.66 +1.4
3,444,122 + +0.5
3,444,768 - +0.0
3,444,774 - -0.5
3,444,793 + -0.7
3,444,839 + -1.7

Or see this region's nucleotide sequence