Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3273 and Psest_3274 overlap by 4 nucleotides Psest_3274 and Psest_3275 are separated by 48 nucleotides Psest_3275 and Psest_3276 are separated by 14 nucleotides Psest_3276 and Psest_3277 are separated by 88 nucleotides
Psest_3273: Psest_3273 - Phosphoheptose isomerase, at 3,442,523 to 3,443,116
_3273
Psest_3274: Psest_3274 - Predicted periplasmic or secreted lipoprotein, at 3,443,113 to 3,443,688
_3274
Psest_3275: Psest_3275 - Stringent starvation protein B, at 3,443,737 to 3,444,141
_3275
Psest_3276: Psest_3276 - Glutathione S-transferase, at 3,444,156 to 3,444,773
_3276
Psest_3277: Psest_3277 - Cytochrome c1, at 3,444,862 to 3,445,641
_3277
Position (kb)
3443
3444
3445 Strain fitness (log2 ratio)
-1
0
1 at 3443.739 kb on - strand at 3443.739 kb on - strand at 3443.739 kb on - strand at 3443.853 kb on + strand, within Psest_3275 at 3443.876 kb on + strand, within Psest_3275 at 3443.876 kb on + strand, within Psest_3275 at 3443.876 kb on + strand, within Psest_3275 at 3443.876 kb on + strand, within Psest_3275 at 3443.877 kb on - strand, within Psest_3275 at 3443.877 kb on - strand, within Psest_3275 at 3443.946 kb on + strand, within Psest_3275 at 3443.946 kb on + strand, within Psest_3275 at 3443.947 kb on - strand, within Psest_3275 at 3443.947 kb on - strand, within Psest_3275 at 3443.949 kb on + strand, within Psest_3275 at 3443.950 kb on - strand, within Psest_3275 at 3444.005 kb on - strand, within Psest_3275 at 3444.005 kb on - strand, within Psest_3275 at 3444.005 kb on - strand, within Psest_3275 at 3444.005 kb on - strand, within Psest_3275 at 3444.122 kb on + strand at 3444.768 kb on - strand at 3444.774 kb on - strand at 3444.793 kb on + strand at 3444.839 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 3,443,739 - +0.5 3,443,739 - -0.2 3,443,739 - +1.0 3,443,853 + Psest_3275 0.29 -1.0 3,443,876 + Psest_3275 0.34 -0.5 3,443,876 + Psest_3275 0.34 +0.0 3,443,876 + Psest_3275 0.34 +0.5 3,443,876 + Psest_3275 0.34 -1.6 3,443,877 - Psest_3275 0.35 +0.0 3,443,877 - Psest_3275 0.35 +0.5 3,443,946 + Psest_3275 0.52 -0.9 3,443,946 + Psest_3275 0.52 +0.3 3,443,947 - Psest_3275 0.52 -1.1 3,443,947 - Psest_3275 0.52 -0.5 3,443,949 + Psest_3275 0.52 +0.3 3,443,950 - Psest_3275 0.53 -0.7 3,444,005 - Psest_3275 0.66 -0.1 3,444,005 - Psest_3275 0.66 -1.0 3,444,005 - Psest_3275 0.66 -1.5 3,444,005 - Psest_3275 0.66 +1.4 3,444,122 + +0.5 3,444,768 - +0.0 3,444,774 - -0.5 3,444,793 + -0.7 3,444,839 + -1.7
Or see this region's nucleotide sequence