Strain Fitness in Marinobacter adhaerens HP15 around HP15_3083

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3081 and HP15_3082 are separated by 92 nucleotidesHP15_3082 and HP15_3083 are separated by 44 nucleotidesHP15_3083 and HP15_3084 are separated by 79 nucleotides HP15_3081: HP15_3081 - chaperone protein DnaK, at 3,236,946 to 3,238,871 _3081 HP15_3082: HP15_3082 - GrpE nucleotide exchange factor, at 3,238,964 to 3,239,563 _3082 HP15_3083: HP15_3083 - hypothetical protein, at 3,239,608 to 3,239,739 _3083 HP15_3084: HP15_3084 - DNA repair protein RecN, at 3,239,819 to 3,241,498 _3084 Position (kb) 3239 3240Strain fitness (log2 ratio) -3 -2 -1 0 1at 3239.019 kb on - strandat 3239.604 kb on - strandat 3239.663 kb on - strand, within HP15_3083at 3239.677 kb on + strand, within HP15_3083at 3239.680 kb on - strand, within HP15_3083at 3239.885 kb on + strandat 3239.940 kb on + strandat 3239.999 kb on - strand, within HP15_3084at 3240.093 kb on - strand, within HP15_3084at 3240.151 kb on - strand, within HP15_3084at 3240.151 kb on - strand, within HP15_3084at 3240.181 kb on - strand, within HP15_3084at 3240.187 kb on + strand, within HP15_3084at 3240.365 kb on + strand, within HP15_3084at 3240.514 kb on + strand, within HP15_3084at 3240.517 kb on - strand, within HP15_3084at 3240.522 kb on - strand, within HP15_3084at 3240.522 kb on - strand, within HP15_3084at 3240.527 kb on + strand, within HP15_3084at 3240.535 kb on - strand, within HP15_3084at 3240.535 kb on - strand, within HP15_3084at 3240.604 kb on + strand, within HP15_3084at 3240.612 kb on - strand, within HP15_3084at 3240.646 kb on - strand, within HP15_3084at 3240.657 kb on + strand, within HP15_3084at 3240.693 kb on - strand, within HP15_3084at 3240.703 kb on - strand, within HP15_3084at 3240.735 kb on - strand, within HP15_3084

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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3,239,019 - -1.8
3,239,604 - -1.6
3,239,663 - HP15_3083 0.42 -3.0
3,239,677 + HP15_3083 0.52 +0.4
3,239,680 - HP15_3083 0.55 -1.4
3,239,885 + -1.1
3,239,940 + -1.3
3,239,999 - HP15_3084 0.11 +0.7
3,240,093 - HP15_3084 0.16 -0.1
3,240,151 - HP15_3084 0.20 -2.3
3,240,151 - HP15_3084 0.20 -1.6
3,240,181 - HP15_3084 0.22 -0.9
3,240,187 + HP15_3084 0.22 +0.3
3,240,365 + HP15_3084 0.33 +0.5
3,240,514 + HP15_3084 0.41 +1.1
3,240,517 - HP15_3084 0.42 +1.5
3,240,522 - HP15_3084 0.42 +0.3
3,240,522 - HP15_3084 0.42 +0.1
3,240,527 + HP15_3084 0.42 +0.4
3,240,535 - HP15_3084 0.43 +0.4
3,240,535 - HP15_3084 0.43 +0.4
3,240,604 + HP15_3084 0.47 +1.6
3,240,612 - HP15_3084 0.47 +1.0
3,240,646 - HP15_3084 0.49 +0.0
3,240,657 + HP15_3084 0.50 -0.1
3,240,693 - HP15_3084 0.52 +0.1
3,240,703 - HP15_3084 0.53 -0.7
3,240,735 - HP15_3084 0.55 +0.3

Or see this region's nucleotide sequence