Strain Fitness in Marinobacter adhaerens HP15 around HP15_3035

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3034 and HP15_3035 are separated by 16 nucleotidesHP15_3035 and HP15_3036 overlap by 1 nucleotides HP15_3034: HP15_3034 - succinylglutamate desuccinylase, at 3,177,953 to 3,179,008 _3034 HP15_3035: HP15_3035 - transporter, AcrB/D/F family, at 3,179,025 to 3,182,051 _3035 HP15_3036: HP15_3036 - efflux transporter, RND family, MFP subunit, at 3,182,051 to 3,183,145 _3036 Position (kb) 3179 3180 3181 3182 3183Strain fitness (log2 ratio) -3 -2 -1 0 1at 3178.044 kb on - strandat 3178.079 kb on + strand, within HP15_3034at 3178.195 kb on - strand, within HP15_3034at 3178.221 kb on - strand, within HP15_3034at 3178.244 kb on + strand, within HP15_3034at 3178.326 kb on - strand, within HP15_3034at 3178.326 kb on - strand, within HP15_3034at 3178.365 kb on - strand, within HP15_3034at 3178.380 kb on + strand, within HP15_3034at 3178.570 kb on + strand, within HP15_3034at 3178.620 kb on - strand, within HP15_3034at 3178.648 kb on + strand, within HP15_3034at 3178.674 kb on - strand, within HP15_3034at 3178.726 kb on + strand, within HP15_3034at 3178.734 kb on - strand, within HP15_3034at 3178.768 kb on + strandat 3178.776 kb on - strand, within HP15_3034at 3178.865 kb on + strand, within HP15_3034at 3178.898 kb on - strand, within HP15_3034at 3179.013 kb on + strandat 3179.023 kb on + strandat 3179.045 kb on - strandat 3179.073 kb on + strandat 3179.142 kb on + strandat 3179.150 kb on - strandat 3179.237 kb on + strandat 3179.237 kb on + strandat 3179.245 kb on - strandat 3179.325 kb on - strandat 3179.376 kb on + strand, within HP15_3035at 3179.438 kb on + strand, within HP15_3035at 3179.461 kb on + strand, within HP15_3035at 3179.469 kb on - strand, within HP15_3035at 3179.469 kb on - strand, within HP15_3035at 3179.496 kb on + strand, within HP15_3035at 3179.523 kb on - strand, within HP15_3035at 3179.740 kb on + strand, within HP15_3035at 3179.740 kb on + strand, within HP15_3035at 3179.740 kb on + strand, within HP15_3035at 3179.831 kb on + strand, within HP15_3035at 3179.882 kb on - strand, within HP15_3035at 3179.922 kb on + strand, within HP15_3035at 3179.992 kb on - strand, within HP15_3035at 3180.010 kb on - strand, within HP15_3035at 3180.010 kb on - strand, within HP15_3035at 3180.101 kb on + strand, within HP15_3035at 3180.184 kb on - strand, within HP15_3035at 3180.204 kb on - strand, within HP15_3035at 3180.212 kb on + strand, within HP15_3035at 3180.233 kb on + strand, within HP15_3035at 3180.378 kb on + strand, within HP15_3035at 3180.390 kb on + strand, within HP15_3035at 3180.419 kb on + strand, within HP15_3035at 3180.478 kb on - strand, within HP15_3035at 3180.505 kb on + strand, within HP15_3035at 3180.600 kb on + strand, within HP15_3035at 3180.708 kb on - strand, within HP15_3035at 3180.791 kb on + strand, within HP15_3035at 3180.961 kb on + strand, within HP15_3035at 3181.032 kb on + strand, within HP15_3035at 3181.080 kb on - strand, within HP15_3035at 3181.116 kb on + strand, within HP15_3035at 3181.148 kb on - strand, within HP15_3035at 3181.148 kb on - strand, within HP15_3035at 3181.315 kb on - strand, within HP15_3035at 3181.406 kb on + strand, within HP15_3035at 3181.425 kb on + strand, within HP15_3035at 3181.439 kb on + strand, within HP15_3035at 3181.691 kb on - strand, within HP15_3035at 3181.839 kb on - strandat 3181.925 kb on - strandat 3182.002 kb on + strandat 3182.115 kb on + strandat 3182.123 kb on - strandat 3182.154 kb on + strandat 3182.241 kb on + strand, within HP15_3036at 3182.249 kb on - strand, within HP15_3036at 3182.319 kb on - strand, within HP15_3036at 3182.367 kb on + strand, within HP15_3036at 3182.372 kb on + strand, within HP15_3036at 3182.382 kb on + strand, within HP15_3036at 3182.428 kb on - strand, within HP15_3036at 3182.447 kb on - strand, within HP15_3036at 3182.447 kb on - strand, within HP15_3036at 3182.491 kb on + strand, within HP15_3036at 3182.499 kb on - strand, within HP15_3036at 3182.504 kb on + strand, within HP15_3036at 3182.574 kb on + strand, within HP15_3036at 3182.574 kb on + strand, within HP15_3036at 3182.582 kb on - strand, within HP15_3036at 3182.620 kb on - strand, within HP15_3036at 3182.668 kb on + strand, within HP15_3036at 3182.676 kb on - strand, within HP15_3036at 3182.676 kb on - strand, within HP15_3036at 3182.688 kb on + strand, within HP15_3036at 3182.696 kb on - strand, within HP15_3036at 3182.714 kb on + strand, within HP15_3036at 3182.749 kb on + strand, within HP15_3036at 3182.789 kb on - strand, within HP15_3036at 3182.801 kb on + strand, within HP15_3036at 3182.864 kb on + strand, within HP15_3036at 3182.907 kb on - strand, within HP15_3036at 3182.907 kb on - strand, within HP15_3036at 3183.046 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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3,178,044 - -0.3
3,178,079 + HP15_3034 0.12 -1.8
3,178,195 - HP15_3034 0.23 +0.7
3,178,221 - HP15_3034 0.25 -1.7
3,178,244 + HP15_3034 0.28 -2.6
3,178,326 - HP15_3034 0.35 +0.8
3,178,326 - HP15_3034 0.35 +0.1
3,178,365 - HP15_3034 0.39 -1.1
3,178,380 + HP15_3034 0.40 -0.2
3,178,570 + HP15_3034 0.58 -0.2
3,178,620 - HP15_3034 0.63 -1.0
3,178,648 + HP15_3034 0.66 -1.0
3,178,674 - HP15_3034 0.68 -3.3
3,178,726 + HP15_3034 0.73 -0.2
3,178,734 - HP15_3034 0.74 -0.2
3,178,768 + -1.2
3,178,776 - HP15_3034 0.78 -1.7
3,178,865 + HP15_3034 0.86 -0.9
3,178,898 - HP15_3034 0.89 -0.7
3,179,013 + -0.2
3,179,023 + +0.1
3,179,045 - -0.2
3,179,073 + +0.5
3,179,142 + +0.4
3,179,150 - +0.1
3,179,237 + -1.1
3,179,237 + -1.0
3,179,245 - +0.0
3,179,325 - -1.1
3,179,376 + HP15_3035 0.12 +1.0
3,179,438 + HP15_3035 0.14 +0.5
3,179,461 + HP15_3035 0.14 -0.8
3,179,469 - HP15_3035 0.15 +0.0
3,179,469 - HP15_3035 0.15 +0.4
3,179,496 + HP15_3035 0.16 +0.2
3,179,523 - HP15_3035 0.16 -1.1
3,179,740 + HP15_3035 0.24 -0.4
3,179,740 + HP15_3035 0.24 -1.1
3,179,740 + HP15_3035 0.24 -1.6
3,179,831 + HP15_3035 0.27 -0.7
3,179,882 - HP15_3035 0.28 -0.5
3,179,922 + HP15_3035 0.30 +0.7
3,179,992 - HP15_3035 0.32 -0.5
3,180,010 - HP15_3035 0.33 -0.2
3,180,010 - HP15_3035 0.33 +0.1
3,180,101 + HP15_3035 0.36 +0.6
3,180,184 - HP15_3035 0.38 +0.0
3,180,204 - HP15_3035 0.39 -1.6
3,180,212 + HP15_3035 0.39 +0.3
3,180,233 + HP15_3035 0.40 -0.5
3,180,378 + HP15_3035 0.45 +0.1
3,180,390 + HP15_3035 0.45 +0.8
3,180,419 + HP15_3035 0.46 -0.7
3,180,478 - HP15_3035 0.48 +0.8
3,180,505 + HP15_3035 0.49 -0.2
3,180,600 + HP15_3035 0.52 +1.0
3,180,708 - HP15_3035 0.56 +0.6
3,180,791 + HP15_3035 0.58 -1.6
3,180,961 + HP15_3035 0.64 +0.4
3,181,032 + HP15_3035 0.66 +0.9
3,181,080 - HP15_3035 0.68 -0.5
3,181,116 + HP15_3035 0.69 -2.5
3,181,148 - HP15_3035 0.70 +0.3
3,181,148 - HP15_3035 0.70 +0.3
3,181,315 - HP15_3035 0.76 +0.8
3,181,406 + HP15_3035 0.79 +0.3
3,181,425 + HP15_3035 0.79 -1.0
3,181,439 + HP15_3035 0.80 -0.9
3,181,691 - HP15_3035 0.88 +0.8
3,181,839 - +0.3
3,181,925 - -0.8
3,182,002 + -1.2
3,182,115 + -0.8
3,182,123 - +0.8
3,182,154 + -0.5
3,182,241 + HP15_3036 0.17 -2.9
3,182,249 - HP15_3036 0.18 -0.9
3,182,319 - HP15_3036 0.24 +0.6
3,182,367 + HP15_3036 0.29 -1.5
3,182,372 + HP15_3036 0.29 +1.2
3,182,382 + HP15_3036 0.30 -1.0
3,182,428 - HP15_3036 0.34 +0.0
3,182,447 - HP15_3036 0.36 -1.3
3,182,447 - HP15_3036 0.36 -0.7
3,182,491 + HP15_3036 0.40 +0.1
3,182,499 - HP15_3036 0.41 +0.6
3,182,504 + HP15_3036 0.41 -0.2
3,182,574 + HP15_3036 0.48 +0.0
3,182,574 + HP15_3036 0.48 +0.2
3,182,582 - HP15_3036 0.48 +0.6
3,182,620 - HP15_3036 0.52 +0.8
3,182,668 + HP15_3036 0.56 -0.2
3,182,676 - HP15_3036 0.57 +0.9
3,182,676 - HP15_3036 0.57 +0.6
3,182,688 + HP15_3036 0.58 +1.0
3,182,696 - HP15_3036 0.59 +0.1
3,182,714 + HP15_3036 0.61 -2.2
3,182,749 + HP15_3036 0.64 +0.2
3,182,789 - HP15_3036 0.67 +0.4
3,182,801 + HP15_3036 0.68 +0.3
3,182,864 + HP15_3036 0.74 -0.1
3,182,907 - HP15_3036 0.78 -0.1
3,182,907 - HP15_3036 0.78 -0.1
3,183,046 - +0.1

Or see this region's nucleotide sequence