Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3034 and HP15_3035 are separated by 16 nucleotides HP15_3035 and HP15_3036 overlap by 1 nucleotides
HP15_3034: HP15_3034 - succinylglutamate desuccinylase, at 3,177,953 to 3,179,008
_3034
HP15_3035: HP15_3035 - transporter, AcrB/D/F family, at 3,179,025 to 3,182,051
_3035
HP15_3036: HP15_3036 - efflux transporter, RND family, MFP subunit, at 3,182,051 to 3,183,145
_3036
Position (kb)
3179
3180
3181
3182
3183 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3178.044 kb on - strand at 3178.079 kb on + strand, within HP15_3034 at 3178.195 kb on - strand, within HP15_3034 at 3178.221 kb on - strand, within HP15_3034 at 3178.244 kb on + strand, within HP15_3034 at 3178.326 kb on - strand, within HP15_3034 at 3178.326 kb on - strand, within HP15_3034 at 3178.365 kb on - strand, within HP15_3034 at 3178.380 kb on + strand, within HP15_3034 at 3178.570 kb on + strand, within HP15_3034 at 3178.620 kb on - strand, within HP15_3034 at 3178.648 kb on + strand, within HP15_3034 at 3178.674 kb on - strand, within HP15_3034 at 3178.726 kb on + strand, within HP15_3034 at 3178.734 kb on - strand, within HP15_3034 at 3178.768 kb on + strand at 3178.776 kb on - strand, within HP15_3034 at 3178.865 kb on + strand, within HP15_3034 at 3178.898 kb on - strand, within HP15_3034 at 3179.013 kb on + strand at 3179.023 kb on + strand at 3179.045 kb on - strand at 3179.073 kb on + strand at 3179.142 kb on + strand at 3179.150 kb on - strand at 3179.237 kb on + strand at 3179.237 kb on + strand at 3179.245 kb on - strand at 3179.325 kb on - strand at 3179.376 kb on + strand, within HP15_3035 at 3179.438 kb on + strand, within HP15_3035 at 3179.461 kb on + strand, within HP15_3035 at 3179.469 kb on - strand, within HP15_3035 at 3179.469 kb on - strand, within HP15_3035 at 3179.496 kb on + strand, within HP15_3035 at 3179.523 kb on - strand, within HP15_3035 at 3179.740 kb on + strand, within HP15_3035 at 3179.740 kb on + strand, within HP15_3035 at 3179.740 kb on + strand, within HP15_3035 at 3179.831 kb on + strand, within HP15_3035 at 3179.882 kb on - strand, within HP15_3035 at 3179.922 kb on + strand, within HP15_3035 at 3179.992 kb on - strand, within HP15_3035 at 3180.010 kb on - strand, within HP15_3035 at 3180.010 kb on - strand, within HP15_3035 at 3180.101 kb on + strand, within HP15_3035 at 3180.184 kb on - strand, within HP15_3035 at 3180.204 kb on - strand, within HP15_3035 at 3180.212 kb on + strand, within HP15_3035 at 3180.233 kb on + strand, within HP15_3035 at 3180.378 kb on + strand, within HP15_3035 at 3180.390 kb on + strand, within HP15_3035 at 3180.419 kb on + strand, within HP15_3035 at 3180.478 kb on - strand, within HP15_3035 at 3180.505 kb on + strand, within HP15_3035 at 3180.600 kb on + strand, within HP15_3035 at 3180.708 kb on - strand, within HP15_3035 at 3180.791 kb on + strand, within HP15_3035 at 3180.961 kb on + strand, within HP15_3035 at 3181.032 kb on + strand, within HP15_3035 at 3181.080 kb on - strand, within HP15_3035 at 3181.116 kb on + strand, within HP15_3035 at 3181.148 kb on - strand, within HP15_3035 at 3181.148 kb on - strand, within HP15_3035 at 3181.315 kb on - strand, within HP15_3035 at 3181.406 kb on + strand, within HP15_3035 at 3181.425 kb on + strand, within HP15_3035 at 3181.439 kb on + strand, within HP15_3035 at 3181.691 kb on - strand, within HP15_3035 at 3181.839 kb on - strand at 3181.925 kb on - strand at 3182.002 kb on + strand at 3182.115 kb on + strand at 3182.123 kb on - strand at 3182.154 kb on + strand at 3182.241 kb on + strand, within HP15_3036 at 3182.249 kb on - strand, within HP15_3036 at 3182.319 kb on - strand, within HP15_3036 at 3182.367 kb on + strand, within HP15_3036 at 3182.372 kb on + strand, within HP15_3036 at 3182.382 kb on + strand, within HP15_3036 at 3182.428 kb on - strand, within HP15_3036 at 3182.447 kb on - strand, within HP15_3036 at 3182.447 kb on - strand, within HP15_3036 at 3182.491 kb on + strand, within HP15_3036 at 3182.499 kb on - strand, within HP15_3036 at 3182.504 kb on + strand, within HP15_3036 at 3182.574 kb on + strand, within HP15_3036 at 3182.574 kb on + strand, within HP15_3036 at 3182.582 kb on - strand, within HP15_3036 at 3182.620 kb on - strand, within HP15_3036 at 3182.668 kb on + strand, within HP15_3036 at 3182.676 kb on - strand, within HP15_3036 at 3182.676 kb on - strand, within HP15_3036 at 3182.688 kb on + strand, within HP15_3036 at 3182.696 kb on - strand, within HP15_3036 at 3182.714 kb on + strand, within HP15_3036 at 3182.749 kb on + strand, within HP15_3036 at 3182.789 kb on - strand, within HP15_3036 at 3182.801 kb on + strand, within HP15_3036 at 3182.864 kb on + strand, within HP15_3036 at 3182.907 kb on - strand, within HP15_3036 at 3182.907 kb on - strand, within HP15_3036 at 3183.046 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 3,178,044 - -0.3 3,178,079 + HP15_3034 0.12 -1.8 3,178,195 - HP15_3034 0.23 +0.7 3,178,221 - HP15_3034 0.25 -1.7 3,178,244 + HP15_3034 0.28 -2.6 3,178,326 - HP15_3034 0.35 +0.8 3,178,326 - HP15_3034 0.35 +0.1 3,178,365 - HP15_3034 0.39 -1.1 3,178,380 + HP15_3034 0.40 -0.2 3,178,570 + HP15_3034 0.58 -0.2 3,178,620 - HP15_3034 0.63 -1.0 3,178,648 + HP15_3034 0.66 -1.0 3,178,674 - HP15_3034 0.68 -3.3 3,178,726 + HP15_3034 0.73 -0.2 3,178,734 - HP15_3034 0.74 -0.2 3,178,768 + -1.2 3,178,776 - HP15_3034 0.78 -1.7 3,178,865 + HP15_3034 0.86 -0.9 3,178,898 - HP15_3034 0.89 -0.7 3,179,013 + -0.2 3,179,023 + +0.1 3,179,045 - -0.2 3,179,073 + +0.5 3,179,142 + +0.4 3,179,150 - +0.1 3,179,237 + -1.1 3,179,237 + -1.0 3,179,245 - +0.0 3,179,325 - -1.1 3,179,376 + HP15_3035 0.12 +1.0 3,179,438 + HP15_3035 0.14 +0.5 3,179,461 + HP15_3035 0.14 -0.8 3,179,469 - HP15_3035 0.15 +0.0 3,179,469 - HP15_3035 0.15 +0.4 3,179,496 + HP15_3035 0.16 +0.2 3,179,523 - HP15_3035 0.16 -1.1 3,179,740 + HP15_3035 0.24 -0.4 3,179,740 + HP15_3035 0.24 -1.1 3,179,740 + HP15_3035 0.24 -1.6 3,179,831 + HP15_3035 0.27 -0.7 3,179,882 - HP15_3035 0.28 -0.5 3,179,922 + HP15_3035 0.30 +0.7 3,179,992 - HP15_3035 0.32 -0.5 3,180,010 - HP15_3035 0.33 -0.2 3,180,010 - HP15_3035 0.33 +0.1 3,180,101 + HP15_3035 0.36 +0.6 3,180,184 - HP15_3035 0.38 +0.0 3,180,204 - HP15_3035 0.39 -1.6 3,180,212 + HP15_3035 0.39 +0.3 3,180,233 + HP15_3035 0.40 -0.5 3,180,378 + HP15_3035 0.45 +0.1 3,180,390 + HP15_3035 0.45 +0.8 3,180,419 + HP15_3035 0.46 -0.7 3,180,478 - HP15_3035 0.48 +0.8 3,180,505 + HP15_3035 0.49 -0.2 3,180,600 + HP15_3035 0.52 +1.0 3,180,708 - HP15_3035 0.56 +0.6 3,180,791 + HP15_3035 0.58 -1.6 3,180,961 + HP15_3035 0.64 +0.4 3,181,032 + HP15_3035 0.66 +0.9 3,181,080 - HP15_3035 0.68 -0.5 3,181,116 + HP15_3035 0.69 -2.5 3,181,148 - HP15_3035 0.70 +0.3 3,181,148 - HP15_3035 0.70 +0.3 3,181,315 - HP15_3035 0.76 +0.8 3,181,406 + HP15_3035 0.79 +0.3 3,181,425 + HP15_3035 0.79 -1.0 3,181,439 + HP15_3035 0.80 -0.9 3,181,691 - HP15_3035 0.88 +0.8 3,181,839 - +0.3 3,181,925 - -0.8 3,182,002 + -1.2 3,182,115 + -0.8 3,182,123 - +0.8 3,182,154 + -0.5 3,182,241 + HP15_3036 0.17 -2.9 3,182,249 - HP15_3036 0.18 -0.9 3,182,319 - HP15_3036 0.24 +0.6 3,182,367 + HP15_3036 0.29 -1.5 3,182,372 + HP15_3036 0.29 +1.2 3,182,382 + HP15_3036 0.30 -1.0 3,182,428 - HP15_3036 0.34 +0.0 3,182,447 - HP15_3036 0.36 -1.3 3,182,447 - HP15_3036 0.36 -0.7 3,182,491 + HP15_3036 0.40 +0.1 3,182,499 - HP15_3036 0.41 +0.6 3,182,504 + HP15_3036 0.41 -0.2 3,182,574 + HP15_3036 0.48 +0.0 3,182,574 + HP15_3036 0.48 +0.2 3,182,582 - HP15_3036 0.48 +0.6 3,182,620 - HP15_3036 0.52 +0.8 3,182,668 + HP15_3036 0.56 -0.2 3,182,676 - HP15_3036 0.57 +0.9 3,182,676 - HP15_3036 0.57 +0.6 3,182,688 + HP15_3036 0.58 +1.0 3,182,696 - HP15_3036 0.59 +0.1 3,182,714 + HP15_3036 0.61 -2.2 3,182,749 + HP15_3036 0.64 +0.2 3,182,789 - HP15_3036 0.67 +0.4 3,182,801 + HP15_3036 0.68 +0.3 3,182,864 + HP15_3036 0.74 -0.1 3,182,907 - HP15_3036 0.78 -0.1 3,182,907 - HP15_3036 0.78 -0.1 3,183,046 - +0.1
Or see this region's nucleotide sequence