Strain Fitness in Marinobacter adhaerens HP15 around HP15_3004

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3002 and HP15_3003 are separated by 143 nucleotidesHP15_3003 and HP15_3004 are separated by 144 nucleotidesHP15_3004 and HP15_3005 are separated by 144 nucleotides HP15_3002: HP15_3002 - TonB-dependent receptor, at 3,145,920 to 3,147,929 _3002 HP15_3003: HP15_3003 - protein-export protein SecB, at 3,148,073 to 3,148,576 _3003 HP15_3004: HP15_3004 - rhodanese domain protein, at 3,148,721 to 3,149,137 _3004 HP15_3005: HP15_3005 - phosphoglyceromutase, at 3,149,282 to 3,150,832 _3005 Position (kb) 3148 3149 3150Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3148.196 kb on + strand, within HP15_3003at 3148.289 kb on + strand, within HP15_3003at 3148.331 kb on + strand, within HP15_3003at 3148.388 kb on - strand, within HP15_3003at 3148.388 kb on - strand, within HP15_3003at 3148.395 kb on + strand, within HP15_3003at 3148.470 kb on + strand, within HP15_3003at 3148.487 kb on + strand, within HP15_3003at 3148.609 kb on + strandat 3148.628 kb on + strandat 3148.634 kb on - strandat 3148.641 kb on - strandat 3148.877 kb on - strand, within HP15_3004at 3148.910 kb on + strand, within HP15_3004at 3148.910 kb on + strand, within HP15_3004at 3149.139 kb on + strandat 3149.167 kb on + strandat 3149.167 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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3,148,196 + HP15_3003 0.24 -1.4
3,148,289 + HP15_3003 0.43 -1.2
3,148,331 + HP15_3003 0.51 +1.6
3,148,388 - HP15_3003 0.62 +0.4
3,148,388 - HP15_3003 0.62 -1.8
3,148,395 + HP15_3003 0.64 -1.1
3,148,470 + HP15_3003 0.79 -0.0
3,148,487 + HP15_3003 0.82 -0.4
3,148,609 + -0.5
3,148,628 + +0.5
3,148,634 - -1.8
3,148,641 - -0.6
3,148,877 - HP15_3004 0.37 -0.3
3,148,910 + HP15_3004 0.45 -2.6
3,148,910 + HP15_3004 0.45 -4.1
3,149,139 + -1.6
3,149,167 + +0.8
3,149,167 + +1.0

Or see this region's nucleotide sequence