Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2976 and HP15_2977 are separated by 219 nucleotides HP15_2977 and HP15_2978 are separated by 1 nucleotides HP15_2978 and HP15_2979 are separated by 134 nucleotides
HP15_2976: HP15_2976 - conserved hypothetical protein, membrane, at 3,119,138 to 3,120,490
_2976
HP15_2977: HP15_2977 - ion transport protein, at 3,120,710 to 3,121,531
_2977
HP15_2978: HP15_2978 - invasion gene expression up-regulator, SirB, at 3,121,533 to 3,121,892
_2978
HP15_2979: HP15_2979 - NnrS family protein, at 3,122,027 to 3,123,211
_2979
Position (kb)
3120
3121
3122 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3119.735 kb on + strand, within HP15_2976 at 3119.784 kb on - strand, within HP15_2976 at 3119.824 kb on + strand, within HP15_2976 at 3119.837 kb on - strand, within HP15_2976 at 3119.867 kb on + strand, within HP15_2976 at 3119.905 kb on + strand, within HP15_2976 at 3119.905 kb on + strand, within HP15_2976 at 3119.905 kb on + strand, within HP15_2976 at 3119.957 kb on + strand at 3119.957 kb on + strand, within HP15_2976 at 3119.957 kb on + strand, within HP15_2976 at 3119.965 kb on - strand, within HP15_2976 at 3119.965 kb on - strand, within HP15_2976 at 3119.965 kb on - strand, within HP15_2976 at 3119.970 kb on + strand, within HP15_2976 at 3120.026 kb on - strand, within HP15_2976 at 3120.026 kb on - strand, within HP15_2976 at 3120.173 kb on + strand, within HP15_2976 at 3120.243 kb on + strand, within HP15_2976 at 3120.251 kb on - strand, within HP15_2976 at 3120.251 kb on - strand, within HP15_2976 at 3120.276 kb on - strand, within HP15_2976 at 3120.287 kb on + strand, within HP15_2976 at 3120.342 kb on + strand, within HP15_2976 at 3120.364 kb on + strand at 3120.405 kb on + strand at 3120.410 kb on + strand at 3120.413 kb on - strand at 3120.550 kb on - strand at 3120.606 kb on + strand at 3120.606 kb on + strand at 3120.773 kb on + strand at 3120.788 kb on + strand at 3120.807 kb on + strand, within HP15_2977 at 3121.041 kb on - strand, within HP15_2977 at 3121.069 kb on - strand, within HP15_2977 at 3121.136 kb on + strand, within HP15_2977 at 3121.263 kb on - strand, within HP15_2977 at 3121.277 kb on - strand, within HP15_2977 at 3121.286 kb on + strand, within HP15_2977 at 3121.321 kb on + strand, within HP15_2977 at 3121.329 kb on - strand, within HP15_2977 at 3121.407 kb on - strand, within HP15_2977 at 3121.429 kb on + strand, within HP15_2977 at 3121.471 kb on + strand at 3121.824 kb on + strand, within HP15_2978 at 3121.960 kb on + strand at 3121.962 kb on + strand at 3122.040 kb on - strand at 3122.128 kb on - strand at 3122.129 kb on - strand at 3122.143 kb on + strand at 3122.144 kb on - strand at 3122.148 kb on + strand, within HP15_2979 at 3122.183 kb on - strand, within HP15_2979 at 3122.281 kb on + strand, within HP15_2979 at 3122.289 kb on - strand, within HP15_2979 at 3122.314 kb on + strand, within HP15_2979 at 3122.320 kb on + strand, within HP15_2979 at 3122.320 kb on + strand, within HP15_2979 at 3122.320 kb on + strand, within HP15_2979 at 3122.320 kb on + strand, within HP15_2979 at 3122.320 kb on + strand, within HP15_2979 at 3122.320 kb on + strand, within HP15_2979 at 3122.320 kb on + strand, within HP15_2979 at 3122.328 kb on - strand, within HP15_2979 at 3122.328 kb on - strand, within HP15_2979 at 3122.328 kb on - strand, within HP15_2979 at 3122.328 kb on - strand, within HP15_2979 at 3122.328 kb on - strand, within HP15_2979 at 3122.343 kb on + strand, within HP15_2979 at 3122.351 kb on - strand, within HP15_2979 at 3122.394 kb on - strand, within HP15_2979 at 3122.505 kb on - strand, within HP15_2979
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 3,119,735 + HP15_2976 0.44 +0.4 3,119,784 - HP15_2976 0.48 -2.8 3,119,824 + HP15_2976 0.51 +0.8 3,119,837 - HP15_2976 0.52 +0.0 3,119,867 + HP15_2976 0.54 -0.8 3,119,905 + HP15_2976 0.57 -0.5 3,119,905 + HP15_2976 0.57 -0.1 3,119,905 + HP15_2976 0.57 -0.2 3,119,957 + +1.1 3,119,957 + HP15_2976 0.61 -0.1 3,119,957 + HP15_2976 0.61 -0.8 3,119,965 - HP15_2976 0.61 +1.5 3,119,965 - HP15_2976 0.61 +0.0 3,119,965 - HP15_2976 0.61 +0.1 3,119,970 + HP15_2976 0.61 -0.2 3,120,026 - HP15_2976 0.66 +0.5 3,120,026 - HP15_2976 0.66 -0.8 3,120,173 + HP15_2976 0.76 +0.1 3,120,243 + HP15_2976 0.82 +0.4 3,120,251 - HP15_2976 0.82 +0.4 3,120,251 - HP15_2976 0.82 -0.4 3,120,276 - HP15_2976 0.84 +0.4 3,120,287 + HP15_2976 0.85 +0.4 3,120,342 + HP15_2976 0.89 -0.7 3,120,364 + +0.5 3,120,405 + -0.8 3,120,410 + +0.5 3,120,413 - +0.6 3,120,550 - +0.3 3,120,606 + +0.2 3,120,606 + -0.0 3,120,773 + -1.6 3,120,788 + -1.6 3,120,807 + HP15_2977 0.12 +0.1 3,121,041 - HP15_2977 0.40 -1.5 3,121,069 - HP15_2977 0.44 -0.4 3,121,136 + HP15_2977 0.52 -1.4 3,121,263 - HP15_2977 0.67 -1.8 3,121,277 - HP15_2977 0.69 -0.5 3,121,286 + HP15_2977 0.70 -2.9 3,121,321 + HP15_2977 0.74 -1.1 3,121,329 - HP15_2977 0.75 -0.5 3,121,407 - HP15_2977 0.85 +0.5 3,121,429 + HP15_2977 0.87 -0.9 3,121,471 + -0.1 3,121,824 + HP15_2978 0.81 +0.4 3,121,960 + +0.3 3,121,962 + -0.2 3,122,040 - +1.3 3,122,128 - +0.7 3,122,129 - +0.6 3,122,143 + -0.5 3,122,144 - +0.7 3,122,148 + HP15_2979 0.10 -0.1 3,122,183 - HP15_2979 0.13 +0.7 3,122,281 + HP15_2979 0.21 -0.3 3,122,289 - HP15_2979 0.22 +0.2 3,122,314 + HP15_2979 0.24 -0.8 3,122,320 + HP15_2979 0.25 -0.7 3,122,320 + HP15_2979 0.25 -0.6 3,122,320 + HP15_2979 0.25 -0.2 3,122,320 + HP15_2979 0.25 +0.3 3,122,320 + HP15_2979 0.25 -2.6 3,122,320 + HP15_2979 0.25 -0.2 3,122,320 + HP15_2979 0.25 +0.6 3,122,328 - HP15_2979 0.25 +0.1 3,122,328 - HP15_2979 0.25 +0.2 3,122,328 - HP15_2979 0.25 +0.2 3,122,328 - HP15_2979 0.25 -0.4 3,122,328 - HP15_2979 0.25 +0.9 3,122,343 + HP15_2979 0.27 +1.0 3,122,351 - HP15_2979 0.27 +1.8 3,122,394 - HP15_2979 0.31 +0.4 3,122,505 - HP15_2979 0.40 +0.5
Or see this region's nucleotide sequence