Strain Fitness in Marinobacter adhaerens HP15 around HP15_2977

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2976 and HP15_2977 are separated by 219 nucleotidesHP15_2977 and HP15_2978 are separated by 1 nucleotidesHP15_2978 and HP15_2979 are separated by 134 nucleotides HP15_2976: HP15_2976 - conserved hypothetical protein, membrane, at 3,119,138 to 3,120,490 _2976 HP15_2977: HP15_2977 - ion transport protein, at 3,120,710 to 3,121,531 _2977 HP15_2978: HP15_2978 - invasion gene expression up-regulator, SirB, at 3,121,533 to 3,121,892 _2978 HP15_2979: HP15_2979 - NnrS family protein, at 3,122,027 to 3,123,211 _2979 Position (kb) 3120 3121 3122Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3119.735 kb on + strand, within HP15_2976at 3119.784 kb on - strand, within HP15_2976at 3119.824 kb on + strand, within HP15_2976at 3119.837 kb on - strand, within HP15_2976at 3119.867 kb on + strand, within HP15_2976at 3119.905 kb on + strand, within HP15_2976at 3119.905 kb on + strand, within HP15_2976at 3119.905 kb on + strand, within HP15_2976at 3119.957 kb on + strandat 3119.957 kb on + strand, within HP15_2976at 3119.957 kb on + strand, within HP15_2976at 3119.965 kb on - strand, within HP15_2976at 3119.965 kb on - strand, within HP15_2976at 3119.965 kb on - strand, within HP15_2976at 3119.970 kb on + strand, within HP15_2976at 3120.026 kb on - strand, within HP15_2976at 3120.026 kb on - strand, within HP15_2976at 3120.173 kb on + strand, within HP15_2976at 3120.243 kb on + strand, within HP15_2976at 3120.251 kb on - strand, within HP15_2976at 3120.251 kb on - strand, within HP15_2976at 3120.276 kb on - strand, within HP15_2976at 3120.287 kb on + strand, within HP15_2976at 3120.342 kb on + strand, within HP15_2976at 3120.364 kb on + strandat 3120.405 kb on + strandat 3120.410 kb on + strandat 3120.413 kb on - strandat 3120.550 kb on - strandat 3120.606 kb on + strandat 3120.606 kb on + strandat 3120.773 kb on + strandat 3120.788 kb on + strandat 3120.807 kb on + strand, within HP15_2977at 3121.041 kb on - strand, within HP15_2977at 3121.069 kb on - strand, within HP15_2977at 3121.136 kb on + strand, within HP15_2977at 3121.263 kb on - strand, within HP15_2977at 3121.277 kb on - strand, within HP15_2977at 3121.286 kb on + strand, within HP15_2977at 3121.321 kb on + strand, within HP15_2977at 3121.329 kb on - strand, within HP15_2977at 3121.407 kb on - strand, within HP15_2977at 3121.429 kb on + strand, within HP15_2977at 3121.471 kb on + strandat 3121.824 kb on + strand, within HP15_2978at 3121.960 kb on + strandat 3121.962 kb on + strandat 3122.040 kb on - strandat 3122.128 kb on - strandat 3122.129 kb on - strandat 3122.143 kb on + strandat 3122.144 kb on - strandat 3122.148 kb on + strand, within HP15_2979at 3122.183 kb on - strand, within HP15_2979at 3122.281 kb on + strand, within HP15_2979at 3122.289 kb on - strand, within HP15_2979at 3122.314 kb on + strand, within HP15_2979at 3122.320 kb on + strand, within HP15_2979at 3122.320 kb on + strand, within HP15_2979at 3122.320 kb on + strand, within HP15_2979at 3122.320 kb on + strand, within HP15_2979at 3122.320 kb on + strand, within HP15_2979at 3122.320 kb on + strand, within HP15_2979at 3122.320 kb on + strand, within HP15_2979at 3122.328 kb on - strand, within HP15_2979at 3122.328 kb on - strand, within HP15_2979at 3122.328 kb on - strand, within HP15_2979at 3122.328 kb on - strand, within HP15_2979at 3122.328 kb on - strand, within HP15_2979at 3122.343 kb on + strand, within HP15_2979at 3122.351 kb on - strand, within HP15_2979at 3122.394 kb on - strand, within HP15_2979at 3122.505 kb on - strand, within HP15_2979

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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3,119,735 + HP15_2976 0.44 +0.4
3,119,784 - HP15_2976 0.48 -2.8
3,119,824 + HP15_2976 0.51 +0.8
3,119,837 - HP15_2976 0.52 +0.0
3,119,867 + HP15_2976 0.54 -0.8
3,119,905 + HP15_2976 0.57 -0.5
3,119,905 + HP15_2976 0.57 -0.1
3,119,905 + HP15_2976 0.57 -0.2
3,119,957 + +1.1
3,119,957 + HP15_2976 0.61 -0.1
3,119,957 + HP15_2976 0.61 -0.8
3,119,965 - HP15_2976 0.61 +1.5
3,119,965 - HP15_2976 0.61 +0.0
3,119,965 - HP15_2976 0.61 +0.1
3,119,970 + HP15_2976 0.61 -0.2
3,120,026 - HP15_2976 0.66 +0.5
3,120,026 - HP15_2976 0.66 -0.8
3,120,173 + HP15_2976 0.76 +0.1
3,120,243 + HP15_2976 0.82 +0.4
3,120,251 - HP15_2976 0.82 +0.4
3,120,251 - HP15_2976 0.82 -0.4
3,120,276 - HP15_2976 0.84 +0.4
3,120,287 + HP15_2976 0.85 +0.4
3,120,342 + HP15_2976 0.89 -0.7
3,120,364 + +0.5
3,120,405 + -0.8
3,120,410 + +0.5
3,120,413 - +0.6
3,120,550 - +0.3
3,120,606 + +0.2
3,120,606 + -0.0
3,120,773 + -1.6
3,120,788 + -1.6
3,120,807 + HP15_2977 0.12 +0.1
3,121,041 - HP15_2977 0.40 -1.5
3,121,069 - HP15_2977 0.44 -0.4
3,121,136 + HP15_2977 0.52 -1.4
3,121,263 - HP15_2977 0.67 -1.8
3,121,277 - HP15_2977 0.69 -0.5
3,121,286 + HP15_2977 0.70 -2.9
3,121,321 + HP15_2977 0.74 -1.1
3,121,329 - HP15_2977 0.75 -0.5
3,121,407 - HP15_2977 0.85 +0.5
3,121,429 + HP15_2977 0.87 -0.9
3,121,471 + -0.1
3,121,824 + HP15_2978 0.81 +0.4
3,121,960 + +0.3
3,121,962 + -0.2
3,122,040 - +1.3
3,122,128 - +0.7
3,122,129 - +0.6
3,122,143 + -0.5
3,122,144 - +0.7
3,122,148 + HP15_2979 0.10 -0.1
3,122,183 - HP15_2979 0.13 +0.7
3,122,281 + HP15_2979 0.21 -0.3
3,122,289 - HP15_2979 0.22 +0.2
3,122,314 + HP15_2979 0.24 -0.8
3,122,320 + HP15_2979 0.25 -0.7
3,122,320 + HP15_2979 0.25 -0.6
3,122,320 + HP15_2979 0.25 -0.2
3,122,320 + HP15_2979 0.25 +0.3
3,122,320 + HP15_2979 0.25 -2.6
3,122,320 + HP15_2979 0.25 -0.2
3,122,320 + HP15_2979 0.25 +0.6
3,122,328 - HP15_2979 0.25 +0.1
3,122,328 - HP15_2979 0.25 +0.2
3,122,328 - HP15_2979 0.25 +0.2
3,122,328 - HP15_2979 0.25 -0.4
3,122,328 - HP15_2979 0.25 +0.9
3,122,343 + HP15_2979 0.27 +1.0
3,122,351 - HP15_2979 0.27 +1.8
3,122,394 - HP15_2979 0.31 +0.4
3,122,505 - HP15_2979 0.40 +0.5

Or see this region's nucleotide sequence