Strain Fitness in Marinobacter adhaerens HP15 around HP15_2795

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2794 and HP15_2795 are separated by 72 nucleotidesHP15_2795 and HP15_2796 are separated by 154 nucleotides HP15_2794: HP15_2794 - L-allo-threonine aldolase, at 2,941,466 to 2,942,476 _2794 HP15_2795: HP15_2795 - transporter, BCCT family protein, at 2,942,549 to 2,944,144 _2795 HP15_2796: HP15_2796 - serine protease, at 2,944,299 to 2,945,192 _2796 Position (kb) 2942 2943 2944 2945Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2941.571 kb on - strand, within HP15_2794at 2941.619 kb on + strand, within HP15_2794at 2941.745 kb on + strand, within HP15_2794at 2941.753 kb on - strand, within HP15_2794at 2941.755 kb on - strand, within HP15_2794at 2941.757 kb on + strand, within HP15_2794at 2941.763 kb on - strand, within HP15_2794at 2941.866 kb on + strand, within HP15_2794at 2941.866 kb on + strand, within HP15_2794at 2941.874 kb on - strand, within HP15_2794at 2941.913 kb on + strand, within HP15_2794at 2941.913 kb on + strand, within HP15_2794at 2941.918 kb on + strand, within HP15_2794at 2941.921 kb on - strand, within HP15_2794at 2941.921 kb on - strand, within HP15_2794at 2941.926 kb on - strand, within HP15_2794at 2941.945 kb on - strand, within HP15_2794at 2941.952 kb on - strand, within HP15_2794at 2942.065 kb on - strand, within HP15_2794at 2942.065 kb on - strand, within HP15_2794at 2942.065 kb on - strand, within HP15_2794at 2942.065 kb on - strand, within HP15_2794at 2942.115 kb on + strand, within HP15_2794at 2942.325 kb on - strand, within HP15_2794at 2942.325 kb on - strand, within HP15_2794at 2942.325 kb on - strand, within HP15_2794at 2942.325 kb on - strand, within HP15_2794at 2942.535 kb on + strandat 2942.539 kb on - strandat 2942.548 kb on - strandat 2942.608 kb on + strandat 2942.616 kb on - strandat 2942.655 kb on - strandat 2942.657 kb on - strandat 2942.657 kb on - strandat 2942.684 kb on - strandat 2942.684 kb on - strandat 2942.846 kb on - strand, within HP15_2795at 2943.034 kb on - strand, within HP15_2795at 2943.108 kb on - strand, within HP15_2795at 2943.125 kb on + strand, within HP15_2795at 2943.255 kb on - strand, within HP15_2795at 2943.255 kb on - strand, within HP15_2795at 2943.334 kb on - strand, within HP15_2795at 2943.395 kb on + strand, within HP15_2795at 2943.396 kb on - strand, within HP15_2795at 2943.506 kb on + strand, within HP15_2795at 2943.578 kb on + strand, within HP15_2795at 2943.644 kb on - strand, within HP15_2795at 2943.649 kb on - strand, within HP15_2795at 2943.649 kb on - strand, within HP15_2795at 2943.659 kb on - strand, within HP15_2795at 2943.659 kb on - strand, within HP15_2795at 2943.699 kb on + strand, within HP15_2795at 2943.746 kb on - strand, within HP15_2795at 2943.746 kb on - strand, within HP15_2795at 2943.811 kb on - strand, within HP15_2795at 2943.818 kb on + strand, within HP15_2795at 2943.858 kb on + strand, within HP15_2795at 2944.058 kb on + strandat 2944.071 kb on + strandat 2944.099 kb on - strandat 2944.163 kb on - strandat 2944.256 kb on - strandat 2944.281 kb on + strandat 2944.322 kb on - strandat 2944.353 kb on + strandat 2944.380 kb on - strandat 2944.504 kb on + strand, within HP15_2796at 2944.511 kb on - strand, within HP15_2796at 2944.511 kb on - strand, within HP15_2796at 2944.548 kb on + strand, within HP15_2796at 2944.553 kb on + strand, within HP15_2796at 2944.553 kb on + strand, within HP15_2796at 2944.553 kb on + strand, within HP15_2796at 2944.562 kb on - strand, within HP15_2796at 2944.716 kb on - strand, within HP15_2796at 2944.730 kb on + strand, within HP15_2796at 2944.830 kb on - strand, within HP15_2796at 2944.847 kb on - strand, within HP15_2796at 2944.847 kb on - strand, within HP15_2796at 2944.962 kb on + strand, within HP15_2796at 2944.963 kb on + strand, within HP15_2796at 2944.963 kb on + strand, within HP15_2796at 2944.970 kb on - strand, within HP15_2796at 2945.099 kb on + strand, within HP15_2796at 2945.133 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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2,941,571 - HP15_2794 0.10 +0.3
2,941,619 + HP15_2794 0.15 +1.2
2,941,745 + HP15_2794 0.28 +0.6
2,941,753 - HP15_2794 0.28 +0.1
2,941,755 - HP15_2794 0.29 +0.5
2,941,757 + HP15_2794 0.29 +0.2
2,941,763 - HP15_2794 0.29 +0.2
2,941,866 + HP15_2794 0.40 +0.3
2,941,866 + HP15_2794 0.40 -0.3
2,941,874 - HP15_2794 0.40 -0.1
2,941,913 + HP15_2794 0.44 -0.3
2,941,913 + HP15_2794 0.44 +0.8
2,941,918 + HP15_2794 0.45 -0.4
2,941,921 - HP15_2794 0.45 -0.3
2,941,921 - HP15_2794 0.45 -0.0
2,941,926 - HP15_2794 0.45 -1.4
2,941,945 - HP15_2794 0.47 +0.4
2,941,952 - HP15_2794 0.48 +0.0
2,942,065 - HP15_2794 0.59 +0.6
2,942,065 - HP15_2794 0.59 -0.7
2,942,065 - HP15_2794 0.59 -1.9
2,942,065 - HP15_2794 0.59 -0.2
2,942,115 + HP15_2794 0.64 -0.7
2,942,325 - HP15_2794 0.85 +1.0
2,942,325 - HP15_2794 0.85 +0.5
2,942,325 - HP15_2794 0.85 +0.4
2,942,325 - HP15_2794 0.85 +0.4
2,942,535 + -2.5
2,942,539 - -0.1
2,942,548 - -1.0
2,942,608 + -2.0
2,942,616 - -0.8
2,942,655 - -0.7
2,942,657 - +2.2
2,942,657 - +0.8
2,942,684 - +0.2
2,942,684 - +0.6
2,942,846 - HP15_2795 0.19 -0.0
2,943,034 - HP15_2795 0.30 +0.5
2,943,108 - HP15_2795 0.35 +0.1
2,943,125 + HP15_2795 0.36 +0.6
2,943,255 - HP15_2795 0.44 +0.1
2,943,255 - HP15_2795 0.44 -0.3
2,943,334 - HP15_2795 0.49 +0.1
2,943,395 + HP15_2795 0.53 +0.4
2,943,396 - HP15_2795 0.53 +0.2
2,943,506 + HP15_2795 0.60 +0.9
2,943,578 + HP15_2795 0.64 +0.4
2,943,644 - HP15_2795 0.69 +0.8
2,943,649 - HP15_2795 0.69 -0.1
2,943,649 - HP15_2795 0.69 +0.2
2,943,659 - HP15_2795 0.70 +0.8
2,943,659 - HP15_2795 0.70 +2.5
2,943,699 + HP15_2795 0.72 +0.8
2,943,746 - HP15_2795 0.75 -0.6
2,943,746 - HP15_2795 0.75 +0.5
2,943,811 - HP15_2795 0.79 -1.0
2,943,818 + HP15_2795 0.80 +0.0
2,943,858 + HP15_2795 0.82 +0.7
2,944,058 + +0.0
2,944,071 + +1.1
2,944,099 - +0.3
2,944,163 - -2.2
2,944,256 - -0.5
2,944,281 + +0.6
2,944,322 - -0.0
2,944,353 + +2.0
2,944,380 - -2.1
2,944,504 + HP15_2796 0.23 +1.7
2,944,511 - HP15_2796 0.24 +0.8
2,944,511 - HP15_2796 0.24 -1.0
2,944,548 + HP15_2796 0.28 -1.2
2,944,553 + HP15_2796 0.28 -1.0
2,944,553 + HP15_2796 0.28 +0.0
2,944,553 + HP15_2796 0.28 -1.9
2,944,562 - HP15_2796 0.29 -0.0
2,944,716 - HP15_2796 0.47 -2.8
2,944,730 + HP15_2796 0.48 +0.2
2,944,830 - HP15_2796 0.59 +0.6
2,944,847 - HP15_2796 0.61 -0.7
2,944,847 - HP15_2796 0.61 +0.4
2,944,962 + HP15_2796 0.74 +1.4
2,944,963 + HP15_2796 0.74 +0.4
2,944,963 + HP15_2796 0.74 +0.4
2,944,970 - HP15_2796 0.75 +0.7
2,945,099 + HP15_2796 0.89 +0.6
2,945,133 - +0.9

Or see this region's nucleotide sequence