Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2794 and HP15_2795 are separated by 72 nucleotides HP15_2795 and HP15_2796 are separated by 154 nucleotides
HP15_2794: HP15_2794 - L-allo-threonine aldolase, at 2,941,466 to 2,942,476
_2794
HP15_2795: HP15_2795 - transporter, BCCT family protein, at 2,942,549 to 2,944,144
_2795
HP15_2796: HP15_2796 - serine protease, at 2,944,299 to 2,945,192
_2796
Position (kb)
2942
2943
2944
2945 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2941.571 kb on - strand, within HP15_2794 at 2941.619 kb on + strand, within HP15_2794 at 2941.745 kb on + strand, within HP15_2794 at 2941.753 kb on - strand, within HP15_2794 at 2941.755 kb on - strand, within HP15_2794 at 2941.757 kb on + strand, within HP15_2794 at 2941.763 kb on - strand, within HP15_2794 at 2941.866 kb on + strand, within HP15_2794 at 2941.866 kb on + strand, within HP15_2794 at 2941.874 kb on - strand, within HP15_2794 at 2941.913 kb on + strand, within HP15_2794 at 2941.913 kb on + strand, within HP15_2794 at 2941.918 kb on + strand, within HP15_2794 at 2941.921 kb on - strand, within HP15_2794 at 2941.921 kb on - strand, within HP15_2794 at 2941.926 kb on - strand, within HP15_2794 at 2941.945 kb on - strand, within HP15_2794 at 2941.952 kb on - strand, within HP15_2794 at 2942.065 kb on - strand, within HP15_2794 at 2942.065 kb on - strand, within HP15_2794 at 2942.065 kb on - strand, within HP15_2794 at 2942.065 kb on - strand, within HP15_2794 at 2942.115 kb on + strand, within HP15_2794 at 2942.325 kb on - strand, within HP15_2794 at 2942.325 kb on - strand, within HP15_2794 at 2942.325 kb on - strand, within HP15_2794 at 2942.325 kb on - strand, within HP15_2794 at 2942.535 kb on + strand at 2942.539 kb on - strand at 2942.548 kb on - strand at 2942.608 kb on + strand at 2942.616 kb on - strand at 2942.655 kb on - strand at 2942.657 kb on - strand at 2942.657 kb on - strand at 2942.684 kb on - strand at 2942.684 kb on - strand at 2942.846 kb on - strand, within HP15_2795 at 2943.034 kb on - strand, within HP15_2795 at 2943.108 kb on - strand, within HP15_2795 at 2943.125 kb on + strand, within HP15_2795 at 2943.255 kb on - strand, within HP15_2795 at 2943.255 kb on - strand, within HP15_2795 at 2943.334 kb on - strand, within HP15_2795 at 2943.395 kb on + strand, within HP15_2795 at 2943.396 kb on - strand, within HP15_2795 at 2943.506 kb on + strand, within HP15_2795 at 2943.578 kb on + strand, within HP15_2795 at 2943.644 kb on - strand, within HP15_2795 at 2943.649 kb on - strand, within HP15_2795 at 2943.649 kb on - strand, within HP15_2795 at 2943.659 kb on - strand, within HP15_2795 at 2943.659 kb on - strand, within HP15_2795 at 2943.699 kb on + strand, within HP15_2795 at 2943.746 kb on - strand, within HP15_2795 at 2943.746 kb on - strand, within HP15_2795 at 2943.811 kb on - strand, within HP15_2795 at 2943.818 kb on + strand, within HP15_2795 at 2943.858 kb on + strand, within HP15_2795 at 2944.058 kb on + strand at 2944.071 kb on + strand at 2944.099 kb on - strand at 2944.163 kb on - strand at 2944.256 kb on - strand at 2944.281 kb on + strand at 2944.322 kb on - strand at 2944.353 kb on + strand at 2944.380 kb on - strand at 2944.504 kb on + strand, within HP15_2796 at 2944.511 kb on - strand, within HP15_2796 at 2944.511 kb on - strand, within HP15_2796 at 2944.548 kb on + strand, within HP15_2796 at 2944.553 kb on + strand, within HP15_2796 at 2944.553 kb on + strand, within HP15_2796 at 2944.553 kb on + strand, within HP15_2796 at 2944.562 kb on - strand, within HP15_2796 at 2944.716 kb on - strand, within HP15_2796 at 2944.730 kb on + strand, within HP15_2796 at 2944.830 kb on - strand, within HP15_2796 at 2944.847 kb on - strand, within HP15_2796 at 2944.847 kb on - strand, within HP15_2796 at 2944.962 kb on + strand, within HP15_2796 at 2944.963 kb on + strand, within HP15_2796 at 2944.963 kb on + strand, within HP15_2796 at 2944.970 kb on - strand, within HP15_2796 at 2945.099 kb on + strand, within HP15_2796 at 2945.133 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 2,941,571 - HP15_2794 0.10 +0.3 2,941,619 + HP15_2794 0.15 +1.2 2,941,745 + HP15_2794 0.28 +0.6 2,941,753 - HP15_2794 0.28 +0.1 2,941,755 - HP15_2794 0.29 +0.5 2,941,757 + HP15_2794 0.29 +0.2 2,941,763 - HP15_2794 0.29 +0.2 2,941,866 + HP15_2794 0.40 +0.3 2,941,866 + HP15_2794 0.40 -0.3 2,941,874 - HP15_2794 0.40 -0.1 2,941,913 + HP15_2794 0.44 -0.3 2,941,913 + HP15_2794 0.44 +0.8 2,941,918 + HP15_2794 0.45 -0.4 2,941,921 - HP15_2794 0.45 -0.3 2,941,921 - HP15_2794 0.45 -0.0 2,941,926 - HP15_2794 0.45 -1.4 2,941,945 - HP15_2794 0.47 +0.4 2,941,952 - HP15_2794 0.48 +0.0 2,942,065 - HP15_2794 0.59 +0.6 2,942,065 - HP15_2794 0.59 -0.7 2,942,065 - HP15_2794 0.59 -1.9 2,942,065 - HP15_2794 0.59 -0.2 2,942,115 + HP15_2794 0.64 -0.7 2,942,325 - HP15_2794 0.85 +1.0 2,942,325 - HP15_2794 0.85 +0.5 2,942,325 - HP15_2794 0.85 +0.4 2,942,325 - HP15_2794 0.85 +0.4 2,942,535 + -2.5 2,942,539 - -0.1 2,942,548 - -1.0 2,942,608 + -2.0 2,942,616 - -0.8 2,942,655 - -0.7 2,942,657 - +2.2 2,942,657 - +0.8 2,942,684 - +0.2 2,942,684 - +0.6 2,942,846 - HP15_2795 0.19 -0.0 2,943,034 - HP15_2795 0.30 +0.5 2,943,108 - HP15_2795 0.35 +0.1 2,943,125 + HP15_2795 0.36 +0.6 2,943,255 - HP15_2795 0.44 +0.1 2,943,255 - HP15_2795 0.44 -0.3 2,943,334 - HP15_2795 0.49 +0.1 2,943,395 + HP15_2795 0.53 +0.4 2,943,396 - HP15_2795 0.53 +0.2 2,943,506 + HP15_2795 0.60 +0.9 2,943,578 + HP15_2795 0.64 +0.4 2,943,644 - HP15_2795 0.69 +0.8 2,943,649 - HP15_2795 0.69 -0.1 2,943,649 - HP15_2795 0.69 +0.2 2,943,659 - HP15_2795 0.70 +0.8 2,943,659 - HP15_2795 0.70 +2.5 2,943,699 + HP15_2795 0.72 +0.8 2,943,746 - HP15_2795 0.75 -0.6 2,943,746 - HP15_2795 0.75 +0.5 2,943,811 - HP15_2795 0.79 -1.0 2,943,818 + HP15_2795 0.80 +0.0 2,943,858 + HP15_2795 0.82 +0.7 2,944,058 + +0.0 2,944,071 + +1.1 2,944,099 - +0.3 2,944,163 - -2.2 2,944,256 - -0.5 2,944,281 + +0.6 2,944,322 - -0.0 2,944,353 + +2.0 2,944,380 - -2.1 2,944,504 + HP15_2796 0.23 +1.7 2,944,511 - HP15_2796 0.24 +0.8 2,944,511 - HP15_2796 0.24 -1.0 2,944,548 + HP15_2796 0.28 -1.2 2,944,553 + HP15_2796 0.28 -1.0 2,944,553 + HP15_2796 0.28 +0.0 2,944,553 + HP15_2796 0.28 -1.9 2,944,562 - HP15_2796 0.29 -0.0 2,944,716 - HP15_2796 0.47 -2.8 2,944,730 + HP15_2796 0.48 +0.2 2,944,830 - HP15_2796 0.59 +0.6 2,944,847 - HP15_2796 0.61 -0.7 2,944,847 - HP15_2796 0.61 +0.4 2,944,962 + HP15_2796 0.74 +1.4 2,944,963 + HP15_2796 0.74 +0.4 2,944,963 + HP15_2796 0.74 +0.4 2,944,970 - HP15_2796 0.75 +0.7 2,945,099 + HP15_2796 0.89 +0.6 2,945,133 - +0.9
Or see this region's nucleotide sequence