Strain Fitness in Marinobacter adhaerens HP15 around HP15_2725

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2723 and HP15_2724 are separated by 74 nucleotidesHP15_2724 and HP15_2725 are separated by 9 nucleotidesHP15_2725 and HP15_2726 are separated by 47 nucleotides HP15_2723: HP15_2723 - thioredoxin, at 2,876,408 to 2,876,791 _2723 HP15_2724: HP15_2724 - short-chain dehydrogenase/reductase SDR, at 2,876,866 to 2,877,726 _2724 HP15_2725: HP15_2725 - conserved hypothetical protein, at 2,877,736 to 2,878,119 _2725 HP15_2726: HP15_2726 - abortive infection protein-like protein, at 2,878,167 to 2,878,976 _2726 Position (kb) 2877 2878 2879Strain fitness (log2 ratio) -3 -2 -1 0 1at 2876.865 kb on - strandat 2876.884 kb on + strandat 2877.012 kb on - strand, within HP15_2724at 2877.095 kb on + strand, within HP15_2724at 2877.097 kb on - strand, within HP15_2724at 2877.185 kb on - strand, within HP15_2724at 2877.209 kb on + strand, within HP15_2724at 2877.217 kb on - strand, within HP15_2724at 2877.217 kb on - strand, within HP15_2724at 2877.232 kb on - strand, within HP15_2724at 2877.273 kb on + strand, within HP15_2724at 2877.286 kb on + strand, within HP15_2724at 2877.286 kb on + strand, within HP15_2724at 2877.286 kb on + strand, within HP15_2724at 2877.294 kb on - strand, within HP15_2724at 2877.330 kb on - strand, within HP15_2724at 2877.385 kb on + strand, within HP15_2724at 2877.420 kb on + strand, within HP15_2724at 2877.439 kb on + strand, within HP15_2724at 2877.439 kb on + strand, within HP15_2724at 2877.447 kb on - strand, within HP15_2724at 2877.474 kb on + strand, within HP15_2724at 2877.487 kb on - strand, within HP15_2724at 2877.509 kb on - strand, within HP15_2724at 2877.513 kb on - strand, within HP15_2724at 2877.571 kb on - strand, within HP15_2724at 2877.662 kb on + strandat 2877.712 kb on - strandat 2877.828 kb on + strand, within HP15_2725at 2877.836 kb on - strand, within HP15_2725at 2877.978 kb on + strand, within HP15_2725at 2878.002 kb on + strand, within HP15_2725at 2878.079 kb on - strand, within HP15_2725at 2878.112 kb on - strandat 2878.173 kb on - strandat 2878.260 kb on + strand, within HP15_2726at 2878.290 kb on + strand, within HP15_2726at 2878.340 kb on - strand, within HP15_2726at 2878.354 kb on - strand, within HP15_2726at 2878.449 kb on + strand, within HP15_2726at 2878.471 kb on + strand, within HP15_2726at 2878.471 kb on + strand, within HP15_2726at 2878.471 kb on + strand, within HP15_2726at 2878.483 kb on - strand, within HP15_2726at 2878.499 kb on + strand, within HP15_2726at 2878.543 kb on - strand, within HP15_2726at 2878.558 kb on - strand, within HP15_2726at 2878.575 kb on - strand, within HP15_2726at 2878.636 kb on + strand, within HP15_2726at 2878.691 kb on + strand, within HP15_2726at 2878.710 kb on - strand, within HP15_2726at 2878.734 kb on + strand, within HP15_2726at 2878.774 kb on - strand, within HP15_2726at 2878.820 kb on - strand, within HP15_2726at 2878.852 kb on + strand, within HP15_2726at 2878.973 kb on + strandat 2878.988 kb on + strandat 2878.988 kb on + strandat 2879.024 kb on + strandat 2879.032 kb on - strandat 2879.079 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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2,876,865 - -3.4
2,876,884 + +0.0
2,877,012 - HP15_2724 0.17 -1.3
2,877,095 + HP15_2724 0.27 +0.1
2,877,097 - HP15_2724 0.27 -0.1
2,877,185 - HP15_2724 0.37 +1.2
2,877,209 + HP15_2724 0.40 -1.2
2,877,217 - HP15_2724 0.41 +0.5
2,877,217 - HP15_2724 0.41 -0.2
2,877,232 - HP15_2724 0.43 -1.0
2,877,273 + HP15_2724 0.47 +0.2
2,877,286 + HP15_2724 0.49 -1.1
2,877,286 + HP15_2724 0.49 -0.3
2,877,286 + HP15_2724 0.49 +0.2
2,877,294 - HP15_2724 0.50 -0.4
2,877,330 - HP15_2724 0.54 +0.4
2,877,385 + HP15_2724 0.60 -0.6
2,877,420 + HP15_2724 0.64 -0.5
2,877,439 + HP15_2724 0.67 +0.3
2,877,439 + HP15_2724 0.67 -1.2
2,877,447 - HP15_2724 0.67 +0.5
2,877,474 + HP15_2724 0.71 +0.9
2,877,487 - HP15_2724 0.72 +0.4
2,877,509 - HP15_2724 0.75 -0.7
2,877,513 - HP15_2724 0.75 -1.6
2,877,571 - HP15_2724 0.82 -1.1
2,877,662 + -1.1
2,877,712 - +0.7
2,877,828 + HP15_2725 0.24 -0.4
2,877,836 - HP15_2725 0.26 +0.1
2,877,978 + HP15_2725 0.63 -2.0
2,878,002 + HP15_2725 0.69 -3.3
2,878,079 - HP15_2725 0.89 -0.9
2,878,112 - -1.3
2,878,173 - +0.4
2,878,260 + HP15_2726 0.11 -1.0
2,878,290 + HP15_2726 0.15 +0.2
2,878,340 - HP15_2726 0.21 +0.1
2,878,354 - HP15_2726 0.23 -0.9
2,878,449 + HP15_2726 0.35 -0.1
2,878,471 + HP15_2726 0.38 -0.2
2,878,471 + HP15_2726 0.38 +0.9
2,878,471 + HP15_2726 0.38 +0.0
2,878,483 - HP15_2726 0.39 +1.3
2,878,499 + HP15_2726 0.41 +0.8
2,878,543 - HP15_2726 0.46 -1.1
2,878,558 - HP15_2726 0.48 -1.1
2,878,575 - HP15_2726 0.50 -0.4
2,878,636 + HP15_2726 0.58 -0.8
2,878,691 + HP15_2726 0.65 -0.4
2,878,710 - HP15_2726 0.67 +0.8
2,878,734 + HP15_2726 0.70 -0.1
2,878,774 - HP15_2726 0.75 -0.9
2,878,820 - HP15_2726 0.81 +1.7
2,878,852 + HP15_2726 0.85 -0.5
2,878,973 + +0.6
2,878,988 + +0.8
2,878,988 + +0.3
2,879,024 + -1.1
2,879,032 - -0.8
2,879,079 + +0.0

Or see this region's nucleotide sequence