Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2723 and HP15_2724 are separated by 74 nucleotides HP15_2724 and HP15_2725 are separated by 9 nucleotides HP15_2725 and HP15_2726 are separated by 47 nucleotides
HP15_2723: HP15_2723 - thioredoxin, at 2,876,408 to 2,876,791
_2723
HP15_2724: HP15_2724 - short-chain dehydrogenase/reductase SDR, at 2,876,866 to 2,877,726
_2724
HP15_2725: HP15_2725 - conserved hypothetical protein, at 2,877,736 to 2,878,119
_2725
HP15_2726: HP15_2726 - abortive infection protein-like protein, at 2,878,167 to 2,878,976
_2726
Position (kb)
2877
2878
2879 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2876.865 kb on - strand at 2876.884 kb on + strand at 2877.012 kb on - strand, within HP15_2724 at 2877.095 kb on + strand, within HP15_2724 at 2877.097 kb on - strand, within HP15_2724 at 2877.185 kb on - strand, within HP15_2724 at 2877.209 kb on + strand, within HP15_2724 at 2877.217 kb on - strand, within HP15_2724 at 2877.217 kb on - strand, within HP15_2724 at 2877.232 kb on - strand, within HP15_2724 at 2877.273 kb on + strand, within HP15_2724 at 2877.286 kb on + strand, within HP15_2724 at 2877.286 kb on + strand, within HP15_2724 at 2877.286 kb on + strand, within HP15_2724 at 2877.294 kb on - strand, within HP15_2724 at 2877.330 kb on - strand, within HP15_2724 at 2877.385 kb on + strand, within HP15_2724 at 2877.420 kb on + strand, within HP15_2724 at 2877.439 kb on + strand, within HP15_2724 at 2877.439 kb on + strand, within HP15_2724 at 2877.447 kb on - strand, within HP15_2724 at 2877.474 kb on + strand, within HP15_2724 at 2877.487 kb on - strand, within HP15_2724 at 2877.509 kb on - strand, within HP15_2724 at 2877.513 kb on - strand, within HP15_2724 at 2877.571 kb on - strand, within HP15_2724 at 2877.662 kb on + strand at 2877.712 kb on - strand at 2877.828 kb on + strand, within HP15_2725 at 2877.836 kb on - strand, within HP15_2725 at 2877.978 kb on + strand, within HP15_2725 at 2878.002 kb on + strand, within HP15_2725 at 2878.079 kb on - strand, within HP15_2725 at 2878.112 kb on - strand at 2878.173 kb on - strand at 2878.260 kb on + strand, within HP15_2726 at 2878.290 kb on + strand, within HP15_2726 at 2878.340 kb on - strand, within HP15_2726 at 2878.354 kb on - strand, within HP15_2726 at 2878.449 kb on + strand, within HP15_2726 at 2878.471 kb on + strand, within HP15_2726 at 2878.471 kb on + strand, within HP15_2726 at 2878.471 kb on + strand, within HP15_2726 at 2878.483 kb on - strand, within HP15_2726 at 2878.499 kb on + strand, within HP15_2726 at 2878.543 kb on - strand, within HP15_2726 at 2878.558 kb on - strand, within HP15_2726 at 2878.575 kb on - strand, within HP15_2726 at 2878.636 kb on + strand, within HP15_2726 at 2878.691 kb on + strand, within HP15_2726 at 2878.710 kb on - strand, within HP15_2726 at 2878.734 kb on + strand, within HP15_2726 at 2878.774 kb on - strand, within HP15_2726 at 2878.820 kb on - strand, within HP15_2726 at 2878.852 kb on + strand, within HP15_2726 at 2878.973 kb on + strand at 2878.988 kb on + strand at 2878.988 kb on + strand at 2879.024 kb on + strand at 2879.032 kb on - strand at 2879.079 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 2,876,865 - -3.4 2,876,884 + +0.0 2,877,012 - HP15_2724 0.17 -1.3 2,877,095 + HP15_2724 0.27 +0.1 2,877,097 - HP15_2724 0.27 -0.1 2,877,185 - HP15_2724 0.37 +1.2 2,877,209 + HP15_2724 0.40 -1.2 2,877,217 - HP15_2724 0.41 +0.5 2,877,217 - HP15_2724 0.41 -0.2 2,877,232 - HP15_2724 0.43 -1.0 2,877,273 + HP15_2724 0.47 +0.2 2,877,286 + HP15_2724 0.49 -1.1 2,877,286 + HP15_2724 0.49 -0.3 2,877,286 + HP15_2724 0.49 +0.2 2,877,294 - HP15_2724 0.50 -0.4 2,877,330 - HP15_2724 0.54 +0.4 2,877,385 + HP15_2724 0.60 -0.6 2,877,420 + HP15_2724 0.64 -0.5 2,877,439 + HP15_2724 0.67 +0.3 2,877,439 + HP15_2724 0.67 -1.2 2,877,447 - HP15_2724 0.67 +0.5 2,877,474 + HP15_2724 0.71 +0.9 2,877,487 - HP15_2724 0.72 +0.4 2,877,509 - HP15_2724 0.75 -0.7 2,877,513 - HP15_2724 0.75 -1.6 2,877,571 - HP15_2724 0.82 -1.1 2,877,662 + -1.1 2,877,712 - +0.7 2,877,828 + HP15_2725 0.24 -0.4 2,877,836 - HP15_2725 0.26 +0.1 2,877,978 + HP15_2725 0.63 -2.0 2,878,002 + HP15_2725 0.69 -3.3 2,878,079 - HP15_2725 0.89 -0.9 2,878,112 - -1.3 2,878,173 - +0.4 2,878,260 + HP15_2726 0.11 -1.0 2,878,290 + HP15_2726 0.15 +0.2 2,878,340 - HP15_2726 0.21 +0.1 2,878,354 - HP15_2726 0.23 -0.9 2,878,449 + HP15_2726 0.35 -0.1 2,878,471 + HP15_2726 0.38 -0.2 2,878,471 + HP15_2726 0.38 +0.9 2,878,471 + HP15_2726 0.38 +0.0 2,878,483 - HP15_2726 0.39 +1.3 2,878,499 + HP15_2726 0.41 +0.8 2,878,543 - HP15_2726 0.46 -1.1 2,878,558 - HP15_2726 0.48 -1.1 2,878,575 - HP15_2726 0.50 -0.4 2,878,636 + HP15_2726 0.58 -0.8 2,878,691 + HP15_2726 0.65 -0.4 2,878,710 - HP15_2726 0.67 +0.8 2,878,734 + HP15_2726 0.70 -0.1 2,878,774 - HP15_2726 0.75 -0.9 2,878,820 - HP15_2726 0.81 +1.7 2,878,852 + HP15_2726 0.85 -0.5 2,878,973 + +0.6 2,878,988 + +0.8 2,878,988 + +0.3 2,879,024 + -1.1 2,879,032 - -0.8 2,879,079 + +0.0
Or see this region's nucleotide sequence